Wall clock time and date at job start Tue Mar 9 2021 14:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86296 * 109.47135 * 2 1 4 4 C 1.86303 * 109.47150 * 240.00335 * 2 1 3 5 5 C 1.90003 * 109.47214 * 120.00273 * 2 1 3 6 6 C 3.07398 * 109.47056 * 120.00247 * 2 1 3 7 7 C 4.50604 * 109.47162 * 120.00265 * 2 1 3 8 8 C 1.33567 * 124.38925 * 8.95388 * 7 6 5 9 9 C 1.44688 * 114.56652 * 179.97438 * 8 7 6 10 10 C 1.41837 * 130.33538 * 180.02562 * 9 8 7 11 11 O 1.35425 * 120.51935 * 359.97438 * 10 9 8 12 12 C 1.35916 * 117.99882 * 174.97798 * 11 10 9 13 13 C 1.38687 * 120.06351 * 265.88694 * 12 11 10 14 14 C 1.38184 * 119.95458 * 179.79566 * 13 12 11 15 15 C 1.38246 * 120.07897 * 0.45289 * 14 13 12 16 16 C 1.50698 * 119.93679 * 179.76891 * 15 14 13 17 17 O 1.42898 * 109.46847 * 120.02929 * 16 15 14 18 18 Si 1.86293 * 109.47331 * 0.02770 * 16 15 14 19 19 H 1.48507 * 109.47181 * 59.99926 * 18 16 15 20 20 H 1.48500 * 109.47472 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47235 * 299.99715 * 18 16 15 22 22 C 1.38290 * 120.12186 * 359.80299 * 15 14 13 23 23 C 1.38213 * 120.04468 * 359.96593 * 22 15 14 24 24 Cl 1.73603 * 120.03689 * 179.97438 * 23 22 15 25 25 N 1.32294 * 118.95758 * 179.97438 * 10 9 8 26 26 C 1.32090 * 121.22238 * 0.03275 * 25 10 9 27 27 N 1.31327 * 122.21287 * 359.97438 * 26 25 10 28 28 C 1.33811 * 121.03805 * 359.97438 * 27 26 25 29 29 S 1.75344 * 124.38506 * 188.64947 * 7 6 5 30 30 H 1.08993 * 109.47253 * 299.99710 * 1 2 3 31 31 H 1.08994 * 109.47156 * 60.00167 * 1 2 3 32 32 H 1.08998 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47107 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47433 * 300.00197 * 3 2 1 35 35 H 1.09005 * 109.46922 * 60.00477 * 3 2 1 36 36 H 1.09002 * 109.46714 * 300.00099 * 4 2 1 37 37 H 1.08994 * 109.47502 * 59.99709 * 4 2 1 38 38 H 1.08997 * 109.47271 * 180.02562 * 4 2 1 39 39 H 1.07997 * 122.72117 * 359.92962 * 8 7 6 40 40 H 1.07996 * 120.02012 * 0.02562 * 13 12 11 41 41 H 1.07995 * 119.96118 * 180.22873 * 14 13 12 42 42 H 1.09003 * 109.47427 * 240.02640 * 16 15 14 43 43 H 0.96705 * 114.00163 * 299.99633 * 17 16 15 44 44 H 1.07996 * 119.97890 * 179.97438 * 22 15 14 45 45 H 1.08001 * 118.89309 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8781 -1.5212 5 6 2.4964 -0.8958 1.5513 6 6 2.8877 -1.4492 2.5098 7 6 3.3651 -2.1243 3.6791 8 6 2.8085 -3.2230 4.1959 9 6 3.4651 -3.7290 5.3818 10 6 3.1623 -4.8554 6.1889 11 8 2.1092 -5.6526 5.8899 12 6 1.9270 -6.7751 6.6343 13 6 2.4486 -7.9861 6.2045 14 6 2.2657 -9.1251 6.9652 15 6 1.5554 -9.0606 8.1495 16 6 1.3534 -10.3058 8.9740 17 8 1.9289 -10.1184 10.2684 18 14 2.1766 -11.7490 8.1313 19 1 3.6300 -11.4777 7.9923 20 1 1.9781 -12.9759 8.9440 21 1 1.5785 -11.9437 6.7861 22 6 1.0293 -7.8558 8.5785 23 6 1.2133 -6.7125 7.8240 24 17 0.5523 -5.2003 8.3625 25 7 3.9248 -5.1149 7.2384 26 6 4.9550 -4.3463 7.5431 27 7 5.2775 -3.2925 6.8290 28 6 4.5680 -2.9479 5.7481 29 16 4.7607 -1.6201 4.6132 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1207 2.2703 -0.8899 35 1 2.1207 2.2702 0.8901 36 1 2.1207 -1.9058 -1.5212 37 1 2.1207 -0.3644 -2.4111 38 1 3.5740 -0.8786 -1.5210 39 1 1.9383 -3.6950 3.7642 40 1 3.0005 -8.0381 5.2776 41 1 2.6750 -10.0674 6.6324 42 1 0.2866 -10.5049 9.0760 43 1 2.8786 -9.9367 10.2541 44 1 0.4745 -7.8082 9.5039 45 1 5.5520 -4.5929 8.4087 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_2163002_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:44:44 Heat of formation + Delta-G solvation = 42.219209 kcal Electronic energy + Delta-G solvation = -30422.849489 eV Core-core repulsion = 26069.699896 eV Total energy + Delta-G solvation = -4353.149593 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 418.049 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.83948 -41.39381 -39.76118 -37.93910 -37.90819 -37.26482 -34.62607 -34.04058 -32.24780 -32.19206 -30.61410 -29.43814 -28.27341 -28.27045 -27.42432 -26.28843 -25.60267 -24.39498 -23.22879 -22.86616 -21.18435 -20.52686 -18.76461 -18.39811 -17.99603 -17.64873 -17.22202 -17.06639 -17.00500 -16.46312 -16.18743 -15.84487 -15.61164 -15.39284 -15.23938 -15.00847 -14.73355 -14.43259 -14.36234 -14.15330 -14.11344 -13.86433 -13.82610 -13.81013 -13.15755 -13.14341 -12.96667 -12.89475 -12.79934 -12.67531 -12.45812 -12.44174 -12.32831 -12.19635 -12.11382 -12.09593 -11.74252 -11.71130 -11.41767 -10.79379 -10.77681 -10.66681 -10.54924 -10.15190 -10.04406 -9.95068 -9.36978 -1.11377 -0.52499 -0.47439 -0.38759 -0.09217 0.30745 0.42664 0.80484 1.15294 1.36464 1.46972 1.48279 1.52951 1.61143 1.71783 1.93779 2.28046 2.31216 2.37846 2.45246 2.54882 2.65465 2.97479 3.09142 3.26230 3.37036 3.47606 3.56792 3.68347 3.83461 3.97428 4.05534 4.18024 4.48723 4.53071 4.57095 4.64442 4.71988 4.81457 4.84224 4.85662 4.85729 4.88682 4.91405 4.91570 4.93929 5.03373 5.28605 5.37064 5.61095 5.70572 5.70843 5.86547 6.34126 6.64980 6.67313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.207 2.793 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.341 4.341 6 C -0.178 4.178 7 C -0.090 4.090 8 C -0.066 4.066 9 C -0.198 4.198 10 C 0.416 3.584 11 O -0.233 6.233 12 C 0.076 3.924 13 C -0.093 4.093 14 C -0.105 4.105 15 C -0.091 4.091 16 C -0.081 4.081 17 O -0.549 6.549 18 Si 0.978 3.022 19 H -0.247 1.247 20 H -0.274 1.274 21 H -0.249 1.249 22 C -0.074 4.074 23 C -0.038 4.038 24 Cl -0.062 7.062 25 N -0.568 5.568 26 C 0.357 3.643 27 N -0.521 5.521 28 C 0.094 3.906 29 S 0.227 5.773 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.134 0.866 43 H 0.391 0.609 44 H 0.153 0.847 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.232 -1.737 -4.186 4.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.388 2.612 3 C -0.571 4.571 4 C -0.570 4.570 5 C -0.376 4.376 6 C -0.180 4.180 7 C -0.206 4.206 8 C -0.096 4.096 9 C -0.213 4.213 10 C 0.222 3.778 11 O -0.135 6.135 12 C 0.034 3.966 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.191 4.191 17 O -0.356 6.356 18 Si 0.802 3.198 19 H -0.170 1.170 20 H -0.199 1.199 21 H -0.173 1.173 22 C -0.092 4.092 23 C -0.065 4.065 24 Cl -0.033 7.033 25 N -0.300 5.300 26 C 0.066 3.934 27 N -0.241 5.241 28 C -0.156 4.156 29 S 0.492 5.508 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.186 0.814 40 H 0.174 0.826 41 H 0.173 0.827 42 H 0.152 0.848 43 H 0.241 0.759 44 H 0.171 0.829 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.951 -1.443 -3.785 4.161 hybrid contribution -1.080 -0.451 0.264 1.200 sum -0.129 -1.894 -3.521 4.000 Atomic orbital electron populations 1.26235 1.20367 1.05049 1.05456 0.76333 0.64927 0.63308 0.56654 1.26234 1.06746 1.18627 1.05512 1.26224 1.06705 1.08579 1.15503 1.37742 0.97293 0.98442 1.04117 1.19963 1.02255 1.00888 0.94897 1.19679 1.01959 0.99973 0.98976 1.20968 1.00809 0.94732 0.93116 1.19617 1.01423 0.99276 1.00945 1.20169 0.84688 0.85656 0.87247 1.84649 1.41889 1.32706 1.54234 1.18481 1.00969 0.85434 0.91757 1.21339 0.98203 0.90372 1.01244 1.21244 0.98131 0.98883 0.93985 1.20594 0.96864 0.95973 0.95697 1.25147 1.05874 1.00114 0.87924 1.86519 1.29094 1.94109 1.25908 0.85267 0.80060 0.75921 0.78596 1.16995 1.19895 1.17316 1.20958 0.99163 0.89465 0.99648 1.21380 1.01261 0.89101 0.94783 1.98403 1.83946 1.31346 1.89634 1.68122 1.09887 1.34689 1.17254 1.25510 0.88544 0.82989 0.96320 1.68150 1.30888 1.19314 1.05775 1.24144 0.93910 0.99569 0.97999 1.84391 1.26301 1.23532 1.16591 0.91205 0.89143 0.91090 0.91047 0.89100 0.91149 0.91092 0.89129 0.91091 0.81433 0.82570 0.82738 0.84834 0.75938 0.82896 0.73908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.68 8.65 113.37 0.98 3.66 16 2 Si 1.21 -8.41 14.26 68.60 0.98 -7.43 16 3 C -0.46 2.73 8.65 113.37 0.98 3.71 16 4 C -0.46 2.80 8.65 113.37 0.98 3.78 16 5 C -0.34 -0.91 12.14 74.32 0.90 0.00 16 6 C -0.18 -1.34 13.64 30.02 0.41 -0.93 16 7 C -0.09 -0.72 6.15 22.46 0.14 -0.58 16 8 C -0.07 -0.48 10.19 22.86 0.23 -0.25 16 9 C -0.20 -1.72 6.08 -20.31 -0.12 -1.85 16 10 C 0.42 3.36 7.47 85.51 0.64 4.00 16 11 O -0.23 -1.69 9.42 -30.83 -0.29 -1.98 16 12 C 0.08 0.35 4.99 22.53 0.11 0.47 16 13 C -0.09 -0.01 9.99 22.36 0.22 0.21 16 14 C -0.10 0.29 8.66 22.26 0.19 0.49 16 15 C -0.09 0.20 5.39 -19.85 -0.11 0.10 16 16 C -0.08 0.38 2.82 71.24 0.20 0.58 16 17 O -0.55 1.52 12.77 -148.98 -1.90 -0.39 16 18 Si 0.98 -4.88 25.07 68.60 1.72 -3.16 16 19 H -0.25 1.29 7.11 99.48 0.71 2.00 16 20 H -0.27 0.20 7.11 99.48 0.71 0.91 16 21 H -0.25 1.15 7.11 99.48 0.71 1.86 16 22 C -0.07 -0.06 9.39 22.28 0.21 0.15 16 23 C -0.04 -0.17 6.33 22.42 0.14 -0.03 16 24 Cl -0.06 -0.43 28.41 -2.72 -0.08 -0.51 16 25 N -0.57 -3.66 9.42 -311.70 -2.94 -6.59 16 26 C 0.36 1.43 12.26 180.93 2.22 3.65 16 27 N -0.52 -4.17 10.47 -195.87 -2.05 -6.22 16 28 C 0.09 0.84 7.69 84.82 0.65 1.49 16 29 S 0.23 1.52 23.16 -56.49 -1.31 0.21 16 30 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 31 H 0.09 -0.70 7.96 -2.39 -0.02 -0.72 16 32 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 33 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 34 H 0.09 -0.72 7.96 -2.39 -0.02 -0.74 16 35 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 36 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 37 H 0.09 -0.73 7.96 -2.39 -0.02 -0.74 16 38 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 40 H 0.16 -0.48 8.06 -2.91 -0.02 -0.51 16 41 H 0.16 -1.07 4.87 -2.91 -0.01 -1.09 16 42 H 0.13 -0.88 7.96 -2.39 -0.02 -0.90 16 43 H 0.39 -3.49 8.70 -74.05 -0.64 -4.13 16 44 H 0.15 -0.08 8.06 -2.91 -0.02 -0.11 16 45 H 0.25 -1.08 8.06 -2.91 -0.02 -1.10 16 Total: 0.00 -18.48 428.87 4.30 -14.18 By element: Atomic # 1 Polarization: -7.94 SS G_CDS: 1.18 Total: -6.76 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 8.99 Total: 18.65 kcal Atomic # 7 Polarization: -7.83 SS G_CDS: -4.99 Total: -12.81 kcal Atomic # 8 Polarization: -0.18 SS G_CDS: -2.19 Total: -2.37 kcal Atomic # 14 Polarization: -13.29 SS G_CDS: 2.70 Total: -10.60 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.31 Total: 0.21 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -18.48 4.30 -14.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_2163002_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.404 kcal (2) G-P(sol) polarization free energy of solvation -18.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds