Wall clock time and date at job start Tue Mar 9 2021 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47138 * 2 1 4 4 C 1.50696 * 109.46906 * 240.00340 * 2 1 3 5 5 C 1.32693 * 124.68611 * 300.29653 * 4 2 1 6 6 C 1.44508 * 113.10150 * 180.19976 * 5 4 2 7 7 C 1.47044 * 123.49224 * 179.80880 * 6 5 4 8 8 O 1.21663 * 119.99829 * 179.73160 * 7 6 5 9 9 N 1.34777 * 120.00116 * 359.45884 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27714 * 9 7 6 11 11 H 1.09002 * 109.46947 * 34.99370 * 10 9 7 12 12 C 1.52994 * 109.46860 * 154.99819 * 10 9 7 13 13 C 1.53009 * 109.47057 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46964 * 299.99935 * 13 12 10 15 15 H 1.09001 * 109.46979 * 299.99936 * 14 13 12 16 16 O 1.42895 * 109.47350 * 179.97438 * 14 13 12 17 17 C 1.35616 * 117.00163 * 149.99530 * 16 14 13 18 18 N 1.32142 * 119.76197 * 0.02562 * 17 16 14 19 19 C 1.31989 * 121.76619 * 179.97438 * 18 17 16 20 20 C 1.38145 * 121.09287 * 359.97438 * 19 18 17 21 21 C 1.38595 * 119.40877 * 359.97438 * 20 19 18 22 22 C 1.39489 * 118.37966 * 359.75311 * 21 20 19 23 23 C 1.48395 * 120.56010 * 180.26747 * 22 21 20 24 24 N 1.31839 * 126.67779 * 359.93606 * 23 22 21 25 25 N 1.28869 * 107.81074 * 179.89295 * 24 23 22 26 26 N 1.28732 * 109.32791 * 0.38209 * 25 24 23 27 27 N 1.28982 * 108.94744 * 359.75969 * 26 25 24 28 28 C 1.53005 * 109.47302 * 59.99816 * 14 13 12 29 29 C 1.52997 * 109.46930 * 274.99613 * 10 9 7 30 30 C 1.36228 * 113.01266 * 359.54501 * 6 5 4 31 31 Cl 1.73595 * 124.60180 * 180.26712 * 30 6 5 32 32 S 1.70444 * 110.78983 * 0.24117 * 30 6 5 33 33 H 0.96695 * 114.00369 * 59.99735 * 1 2 3 34 34 H 1.09003 * 109.47555 * 120.00191 * 2 1 3 35 35 H 1.48504 * 109.99914 * 60.00413 * 3 2 1 36 36 H 1.48500 * 110.00027 * 181.31927 * 3 2 1 37 37 H 1.07999 * 123.45040 * 359.97438 * 5 4 2 38 38 H 0.96990 * 119.99728 * 0.26992 * 9 7 6 39 39 H 1.08998 * 109.47170 * 299.99435 * 12 10 9 40 40 H 1.09002 * 109.47707 * 60.00016 * 12 10 9 41 41 H 1.09002 * 109.46717 * 59.99572 * 13 12 10 42 42 H 1.08996 * 109.47314 * 180.02562 * 13 12 10 43 43 H 1.07993 * 119.45370 * 179.97438 * 19 18 17 44 44 H 1.08000 * 120.29351 * 179.97438 * 20 19 18 45 45 H 1.07999 * 120.80780 * 179.97438 * 21 20 19 46 46 H 0.97001 * 125.33451 * 180.10296 * 25 24 23 47 47 H 1.09001 * 109.47005 * 60.00136 * 28 14 13 48 48 H 1.08998 * 109.47292 * 180.02562 * 28 14 13 49 49 H 1.09001 * 109.46979 * 300.00198 * 29 10 9 50 50 H 1.09000 * 109.47470 * 59.99994 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6640 -1.9739 -1.5350 6 6 2.2776 -2.4011 -2.7716 7 6 2.1348 -3.7571 -3.3222 8 8 2.6759 -4.0472 -4.3725 9 7 1.4091 -4.6801 -2.6605 10 6 1.2719 -6.0329 -3.2061 11 1 2.1979 -6.3191 -3.7049 12 6 0.9806 -7.0142 -2.0690 13 6 0.8367 -8.4269 -2.6388 14 6 -0.3153 -8.4559 -3.6452 15 1 -1.2411 -8.1693 -3.1461 16 8 -0.4495 -9.7751 -4.1778 17 6 -1.6929 -10.1633 -4.5551 18 7 -2.7093 -9.3297 -4.4207 19 6 -3.9354 -9.6660 -4.7754 20 6 -4.2082 -10.9120 -5.3059 21 6 -3.1765 -11.8231 -5.4684 22 6 -1.8890 -11.4412 -5.0913 23 6 -0.7478 -12.3763 -5.2498 24 7 -0.7955 -13.6026 -5.7315 25 7 0.4003 -14.0825 -5.7072 26 7 1.2026 -13.2026 -5.2181 27 7 0.5316 -12.1407 -4.9255 28 6 -0.0241 -7.4745 -4.7823 29 6 0.1201 -6.0623 -4.2127 30 6 2.9973 -1.4158 -3.3772 31 17 3.8513 -1.5988 -4.8775 32 16 2.9449 0.0213 -2.4622 33 1 -0.3933 0.4417 -0.7650 34 1 1.7924 -0.5139 0.8900 35 1 1.5616 2.4679 1.2086 36 1 3.5346 1.7703 -0.0321 37 1 1.0535 -2.6182 -0.9197 38 1 0.9778 -4.4488 -1.8231 39 1 1.8012 -6.9932 -1.3518 40 1 0.0547 -6.7279 -1.5702 41 1 1.7624 -8.7133 -3.1379 42 1 0.6287 -9.1259 -1.8288 43 1 -4.7386 -8.9553 -4.6488 44 1 -5.2163 -11.1738 -5.5913 45 1 -3.3643 -12.8036 -5.8805 46 1 0.6550 -14.9693 -6.0064 47 1 0.9016 -7.7610 -5.2814 48 1 -0.8451 -7.4948 -5.4990 49 1 -0.8058 -5.7760 -3.7139 50 1 0.3276 -5.3632 -5.0228 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857882_17970274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:17 Heat of formation + Delta-G solvation = 92.066379 kcal Electronic energy + Delta-G solvation = -40511.007999 eV Core-core repulsion = 35082.152733 eV Total energy + Delta-G solvation = -5428.855266 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 463.091 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -45.44652 -41.84377 -41.24185 -39.88499 -38.92499 -38.11664 -37.78701 -36.90983 -35.59946 -34.95370 -34.85318 -32.87396 -31.92188 -31.73659 -31.41627 -29.77728 -26.89715 -26.29797 -25.92507 -25.55321 -24.28182 -23.88529 -23.12947 -22.71578 -22.07643 -21.23409 -20.56333 -20.30493 -19.42769 -19.33886 -18.15999 -18.15735 -17.89018 -17.67173 -17.39622 -16.99775 -16.72071 -16.42661 -16.19089 -15.92298 -15.83987 -15.69309 -15.46758 -15.14473 -15.09134 -14.80242 -14.77068 -14.38132 -14.35293 -14.20097 -14.14938 -14.03353 -13.84212 -13.50282 -13.30655 -13.03064 -12.94903 -12.86361 -12.65649 -12.57957 -12.50253 -12.39098 -12.25279 -12.20024 -12.17815 -12.13445 -12.06289 -11.85280 -11.51145 -11.25278 -10.93426 -10.68946 -10.67903 -10.57664 -10.17704 -9.87497 -9.63836 -9.39723 -5.11648 -0.62162 -0.44030 -0.18705 0.16198 0.25527 0.48998 0.73992 1.05343 1.20626 1.27530 1.40629 1.58435 1.89201 1.91231 2.17939 2.18867 2.61993 2.75578 3.10043 3.29135 3.31395 3.56729 3.61476 3.64096 3.82139 3.87137 3.91170 3.98234 3.99711 4.08700 4.14853 4.17637 4.25332 4.33253 4.34320 4.40920 4.42004 4.45271 4.48558 4.58187 4.62318 4.78953 4.81146 4.89586 4.98115 5.00245 5.01402 5.06729 5.10142 5.15276 5.23453 5.25338 5.45825 5.48915 5.59356 6.26341 6.47911 6.72018 6.76648 7.13876 7.16539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.018 4.018 3 Si 0.709 3.291 4 C -0.228 4.228 5 C -0.067 4.067 6 C -0.166 4.166 7 C 0.570 3.430 8 O -0.560 6.560 9 N -0.703 5.703 10 C 0.148 3.852 11 H 0.067 0.933 12 C -0.110 4.110 13 C -0.108 4.108 14 C 0.091 3.909 15 H 0.097 0.903 16 O -0.289 6.289 17 C 0.345 3.655 18 N -0.551 5.551 19 C 0.158 3.842 20 C -0.203 4.203 21 C -0.003 4.003 22 C -0.120 4.120 23 C 0.215 3.785 24 N -0.295 5.295 25 N -0.204 5.204 26 N -0.067 5.067 27 N -0.276 5.276 28 C -0.122 4.122 29 C -0.112 4.112 30 C -0.140 4.140 31 Cl 0.001 6.999 32 S 0.262 5.738 33 H 0.398 0.602 34 H 0.135 0.865 35 H -0.265 1.265 36 H -0.261 1.261 37 H 0.182 0.818 38 H 0.415 0.585 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.198 0.802 44 H 0.180 0.820 45 H 0.164 0.836 46 H 0.493 0.507 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 0.745 3.192 8.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.131 4.131 3 Si 0.612 3.388 4 C -0.345 4.345 5 C -0.095 4.095 6 C -0.186 4.186 7 C 0.356 3.644 8 O -0.439 6.439 9 N -0.355 5.355 10 C 0.043 3.957 11 H 0.085 0.915 12 C -0.148 4.148 13 C -0.146 4.146 14 C 0.035 3.965 15 H 0.114 0.886 16 O -0.195 6.195 17 C 0.164 3.836 18 N -0.275 5.275 19 C 0.001 3.999 20 C -0.223 4.223 21 C -0.030 4.030 22 C -0.126 4.126 23 C -0.066 4.066 24 N -0.148 5.148 25 N -0.054 5.054 26 N -0.062 5.062 27 N -0.148 5.148 28 C -0.160 4.160 29 C -0.151 4.151 30 C -0.287 4.287 31 Cl 0.030 6.970 32 S 0.528 5.472 33 H 0.249 0.751 34 H 0.152 0.848 35 H -0.190 1.190 36 H -0.187 1.187 37 H 0.199 0.801 38 H 0.253 0.747 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.214 0.786 44 H 0.197 0.803 45 H 0.182 0.818 46 H 0.352 0.648 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.103 0.897 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.118 2.755 3.494 6.782 hybrid contribution -0.588 -3.149 -0.556 3.252 sum -5.707 -0.394 2.937 6.430 Atomic orbital electron populations 1.86512 1.16053 1.81961 1.50485 1.24417 0.85560 1.08674 0.94499 0.94309 0.79861 0.76133 0.88487 1.24955 1.07217 0.99251 1.03117 1.21129 0.99226 0.95441 0.93746 1.20349 1.04884 0.94799 0.98530 1.17707 0.78494 0.84346 0.83813 1.90868 1.48476 1.80739 1.23850 1.45728 1.52213 1.11004 1.26601 1.20975 0.98619 0.81139 0.94932 0.91452 1.21689 1.04438 0.91950 0.96678 1.21499 0.97589 0.97607 0.97950 1.22519 1.00613 0.79146 0.94223 0.88551 1.86507 1.23377 1.34322 1.75272 1.19882 0.85678 0.88639 0.89430 1.67494 1.01191 1.34998 1.23809 1.23316 0.92107 0.95781 0.88660 1.22342 1.01791 0.94252 1.03900 1.21788 0.88941 1.00921 0.91374 1.17391 0.91521 0.91437 1.12256 1.23487 0.92891 0.90604 0.99582 1.74839 1.05995 1.11225 1.22759 1.47792 1.01495 1.17413 1.38714 1.78936 1.20934 0.94943 1.11358 1.76290 1.03092 1.16278 1.19136 1.21775 1.01678 0.94641 0.97950 1.21716 0.99208 0.95504 0.98678 1.25802 1.03781 1.02545 0.96554 1.98426 1.73916 1.97289 1.27345 1.83235 1.46417 1.07132 1.10454 0.75105 0.84825 1.19011 1.18696 0.80138 0.74698 0.89173 0.88693 0.91635 0.89981 0.78575 0.80298 0.81821 0.64822 0.92723 0.91965 0.89721 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.43 12.84 -148.98 -1.91 1.52 16 2 C -0.02 0.12 2.95 71.23 0.21 0.32 16 3 Si 0.71 -4.01 30.91 68.60 2.12 -1.89 16 4 C -0.23 1.02 5.68 24.51 0.14 1.16 16 5 C -0.07 0.24 9.71 22.70 0.22 0.46 16 6 C -0.17 -0.52 5.98 -19.84 -0.12 -0.64 16 7 C 0.57 3.83 7.75 86.55 0.67 4.50 16 8 O -0.56 -8.45 14.57 -4.23 -0.06 -8.51 16 9 N -0.70 0.11 5.06 -446.15 -2.26 -2.14 16 10 C 0.15 0.21 2.46 44.99 0.11 0.32 16 11 H 0.07 0.49 7.58 -2.39 -0.02 0.48 16 12 C -0.11 0.36 5.39 30.60 0.16 0.53 16 13 C -0.11 -0.12 5.57 30.60 0.17 0.05 16 14 C 0.09 0.35 2.38 30.59 0.07 0.42 16 15 H 0.10 0.26 6.99 -2.39 -0.02 0.24 16 16 O -0.29 -2.58 8.14 -89.28 -0.73 -3.31 16 17 C 0.34 2.47 7.47 85.07 0.64 3.10 16 18 N -0.55 -1.92 8.64 -308.22 -2.66 -4.58 16 19 C 0.16 -0.47 11.17 84.65 0.95 0.47 16 20 C -0.20 1.01 10.09 22.33 0.23 1.23 16 21 C 0.00 0.00 9.83 22.66 0.22 0.22 16 22 C -0.12 -0.72 5.91 -19.85 -0.12 -0.84 16 23 C 0.21 1.85 7.92 137.35 1.09 2.94 16 24 N -0.29 -1.31 12.15 -52.15 -0.63 -1.94 16 25 N -0.20 -0.18 7.90 37.02 0.29 0.11 16 26 N -0.07 -0.52 13.47 37.02 0.50 -0.02 16 27 N -0.28 -3.25 11.10 -52.21 -0.58 -3.83 16 28 C -0.12 -0.60 5.54 30.58 0.17 -0.43 16 29 C -0.11 -0.29 5.49 30.58 0.17 -0.12 16 30 C -0.14 -0.64 6.87 67.35 0.46 -0.17 16 31 Cl 0.00 0.01 27.20 -2.72 -0.07 -0.06 16 32 S 0.26 -0.53 20.17 -56.49 -1.14 -1.67 16 33 H 0.40 -5.39 8.70 -74.06 -0.64 -6.03 16 34 H 0.13 -0.96 7.96 -2.39 -0.02 -0.98 16 35 H -0.27 -0.18 7.11 99.48 0.71 0.53 16 36 H -0.26 0.26 7.11 99.48 0.71 0.97 16 37 H 0.18 -1.60 7.10 -2.91 -0.02 -1.62 16 38 H 0.42 -2.82 7.15 -92.72 -0.66 -3.49 16 39 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.20 -1.97 8.06 -2.91 -0.02 -1.99 16 44 H 0.18 -2.10 8.06 -2.91 -0.02 -2.13 16 45 H 0.16 -0.68 7.96 -2.91 -0.02 -0.70 16 46 H 0.49 -4.43 8.96 -347.53 -3.12 -7.54 16 47 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.08 -0.05 8.14 -2.39 -0.02 -0.06 16 50 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 Total: 0.00 -29.75 448.15 -5.01 -34.75 By element: Atomic # 1 Polarization: -18.67 SS G_CDS: -3.31 Total: -21.98 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 5.44 Total: 13.54 kcal Atomic # 7 Polarization: -7.06 SS G_CDS: -5.34 Total: -12.40 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -2.70 Total: -10.29 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.12 Total: -1.89 kcal Atomic # 16 Polarization: -0.53 SS G_CDS: -1.14 Total: -1.67 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.07 Total: -0.06 kcal Total: -29.75 -5.01 -34.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857882_17970274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.821 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds