Wall clock time and date at job start Tue Mar 9 2021 12:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36000 * 117.00342 * 2 1 4 4 C 1.38522 * 120.06591 * 0.02562 * 3 2 1 5 5 C 1.38292 * 119.99808 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.92978 * 179.97438 * 5 4 3 7 7 C 1.38206 * 120.14292 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.92605 * 179.97438 * 7 5 4 9 9 O 1.42903 * 109.47152 * 75.00283 * 8 7 5 10 10 Si 1.86305 * 109.47184 * 194.99755 * 8 7 5 11 11 C 1.38290 * 120.15073 * 0.27230 * 7 5 4 12 12 C 1.38522 * 119.99548 * 359.45817 * 11 7 5 13 13 O 1.35992 * 120.07542 * 180.26910 * 12 11 7 14 14 C 1.42898 * 116.99833 * 0.27498 * 13 12 11 15 15 C 1.53007 * 109.47200 * 180.02562 * 14 13 12 16 16 H 1.08993 * 112.84673 * 45.32980 * 15 14 13 17 17 C 1.53783 * 113.61326 * 176.53006 * 15 14 13 18 18 C 1.53778 * 87.07965 * 139.98024 * 17 15 14 19 19 H 1.09000 * 113.61967 * 89.11426 * 18 17 15 20 20 O 1.42901 * 113.61330 * 219.93412 * 18 17 15 21 21 C 1.53780 * 113.61237 * 274.13343 * 15 14 13 22 22 H 1.08993 * 109.47341 * 300.00033 * 1 2 3 23 23 H 1.09003 * 109.47163 * 60.00255 * 1 2 3 24 24 H 1.09003 * 109.47276 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00614 * 359.97438 * 4 3 2 26 26 H 1.08997 * 109.47294 * 270.02018 * 6 5 4 27 27 H 1.09003 * 109.46876 * 30.01899 * 6 5 4 28 28 H 1.08996 * 109.47204 * 150.01689 * 6 5 4 29 29 H 1.08997 * 109.47198 * 314.99961 * 8 7 5 30 30 H 0.96700 * 114.00311 * 180.02562 * 9 8 7 31 31 H 1.48499 * 109.99670 * 178.68093 * 10 8 7 32 32 H 1.48497 * 110.00233 * 300.00062 * 10 8 7 33 33 H 1.07993 * 120.00406 * 179.73033 * 11 7 5 34 34 H 1.08996 * 109.46900 * 299.99865 * 14 13 12 35 35 H 1.09001 * 109.47404 * 59.99610 * 14 13 12 36 36 H 1.08999 * 113.60970 * 254.53088 * 17 15 14 37 37 H 1.09001 * 113.61826 * 25.42534 * 17 15 14 38 38 H 0.96696 * 114.00458 * 180.02562 * 20 18 17 39 39 H 1.09007 * 113.61270 * 334.56955 * 21 15 14 40 40 H 1.08996 * 113.61649 * 105.46831 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3744 0.0005 5 6 1.9228 3.6058 0.0011 6 6 1.1020 4.8697 0.0011 7 6 3.3028 3.6799 0.0016 8 6 3.9836 5.0243 0.0016 9 8 3.8872 5.6071 1.3029 10 14 5.7780 4.8119 -0.4522 11 6 4.0605 2.5230 -0.0041 12 6 3.4364 1.2864 0.0010 13 8 4.1799 0.1477 0.0010 14 6 5.6007 0.3007 0.0016 15 6 6.2622 -1.0790 0.0008 16 1 5.8087 -1.7653 -0.7142 17 6 7.7968 -1.0262 -0.0838 18 6 7.8141 -2.1789 0.9339 19 1 7.7850 -3.1671 0.4750 20 8 8.8399 -2.0555 1.9211 21 6 6.4364 -1.6794 1.4058 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2149 2.3193 0.0005 26 1 0.9042 5.1744 -1.0266 27 1 0.1577 4.6896 0.5148 28 1 1.6505 5.6590 0.5150 29 1 3.4997 5.6766 -0.7254 30 1 4.3046 6.4762 1.3765 31 1 6.4530 6.1341 -0.4868 32 1 6.4490 3.9246 0.5314 33 1 5.1387 2.5836 -0.0080 34 1 5.9072 0.8507 -0.8880 35 1 5.9066 0.8502 0.8919 36 1 8.1897 -1.3019 -1.0625 37 1 8.2237 -0.0992 0.2989 38 1 8.8561 -2.7777 2.5639 39 1 6.4906 -0.9312 2.1967 40 1 5.7328 -2.4815 1.6282 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_34_14060148_11354860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:52 Heat of formation + Delta-G solvation = -100.251037 kcal Electronic energy + Delta-G solvation = -22530.446054 eV Core-core repulsion = 19085.731698 eV Total energy + Delta-G solvation = -3444.714355 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82925 -40.52853 -39.34435 -39.01698 -37.21706 -36.05272 -33.02060 -32.21034 -29.67327 -28.55912 -27.71558 -26.76146 -25.69319 -24.06995 -22.54033 -21.97902 -20.60334 -19.37736 -18.65654 -18.57427 -17.95385 -17.85820 -17.21177 -16.54438 -16.20585 -16.10367 -15.99054 -15.60133 -15.37000 -14.87879 -14.60404 -14.47285 -14.15082 -13.99349 -13.51794 -13.49158 -13.19719 -13.12814 -12.85920 -12.68003 -12.46704 -12.29788 -12.19455 -12.04673 -11.90483 -11.76503 -11.59279 -11.22228 -10.76862 -10.48328 -9.77853 -8.79247 -5.00855 0.11284 0.26899 1.23749 1.51258 1.85948 2.05976 2.27846 2.46401 3.26404 3.34189 3.44428 3.53870 3.67016 3.74169 3.80493 3.89082 3.92017 4.03816 4.18089 4.19089 4.24536 4.32473 4.37112 4.38031 4.41635 4.50415 4.66030 4.70535 4.71357 4.76987 4.77832 4.83123 4.91538 4.95381 5.08186 5.10784 5.21352 5.34892 5.51857 5.62696 6.03601 6.52278 6.59274 6.84241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.093 3.907 4 C -0.175 4.175 5 C -0.063 4.063 6 C -0.115 4.115 7 C -0.084 4.084 8 C -0.074 4.074 9 O -0.552 6.552 10 Si 0.743 3.257 11 C -0.173 4.173 12 C 0.080 3.920 13 O -0.317 6.317 14 C 0.063 3.937 15 C -0.103 4.103 16 H 0.112 0.888 17 C -0.119 4.119 18 C 0.077 3.923 19 H 0.103 0.897 20 O -0.582 6.582 21 C -0.167 4.167 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.115 0.885 25 H 0.158 0.842 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.394 0.606 31 H -0.277 1.277 32 H -0.297 1.297 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.395 0.605 39 H 0.075 0.925 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 0.749 -3.515 4.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.047 3.953 4 C -0.193 4.193 5 C -0.063 4.063 6 C -0.171 4.171 7 C -0.085 4.085 8 C -0.183 4.183 9 O -0.362 6.362 10 Si 0.649 3.351 11 C -0.191 4.191 12 C 0.034 3.966 13 O -0.231 6.231 14 C -0.012 4.012 15 C -0.122 4.122 16 H 0.131 0.869 17 C -0.157 4.157 18 C 0.018 3.982 19 H 0.121 0.879 20 O -0.390 6.390 21 C -0.205 4.205 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.133 0.867 25 H 0.176 0.824 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.245 0.755 31 H -0.203 1.203 32 H -0.225 1.225 33 H 0.160 0.840 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.094 0.906 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.166 0.458 -3.487 3.705 hybrid contribution -0.363 0.536 1.405 1.547 sum -1.529 0.994 -2.082 2.768 Atomic orbital electron populations 1.23350 0.76495 1.05508 1.02320 1.86147 1.23241 1.26051 1.88901 1.18517 0.89301 0.85904 1.01559 1.21223 1.01029 0.90320 1.06739 1.19766 0.93035 0.95626 0.97880 1.20872 0.99119 0.93692 1.03441 1.19003 0.93270 0.93112 1.03103 1.24777 1.11463 0.93862 0.88180 1.86576 1.80323 1.39011 1.30315 0.94321 0.73055 0.79614 0.88134 1.21078 1.00515 0.90937 1.06563 1.18306 0.88690 0.86177 1.03378 1.86134 1.19386 1.28474 1.89114 1.22988 0.77536 0.98793 1.01847 1.22299 0.95405 0.95485 0.98978 0.86939 1.23073 0.93419 0.99182 1.00004 1.23436 0.85882 0.99123 0.89770 0.87936 1.86476 1.55139 1.52855 1.44518 1.23778 0.98492 1.01379 0.96803 0.91833 0.91264 0.86707 0.82442 0.89444 0.90830 0.90683 0.88203 0.75526 1.20290 1.22504 0.83971 0.90063 0.92773 0.88519 0.89737 0.75504 0.90634 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.33 -2.83 10.28 -79.71 -0.82 -3.65 16 3 C 0.09 0.81 6.70 22.57 0.15 0.96 16 4 C -0.17 -0.76 8.69 22.35 0.19 -0.57 16 5 C -0.06 -0.25 5.88 -19.86 -0.12 -0.37 16 6 C -0.11 0.10 9.32 71.23 0.66 0.76 16 7 C -0.08 -0.43 5.30 -19.86 -0.11 -0.53 16 8 C -0.07 -0.04 1.87 71.24 0.13 0.09 16 9 O -0.55 -1.36 11.89 -148.98 -1.77 -3.13 16 10 Si 0.74 -0.22 30.18 68.60 2.07 1.85 16 11 C -0.17 -1.16 7.65 22.35 0.17 -0.99 16 12 C 0.08 0.77 6.70 22.57 0.15 0.92 16 13 O -0.32 -3.12 9.92 -79.62 -0.79 -3.91 16 14 C 0.06 0.25 4.57 71.98 0.33 0.58 16 15 C -0.10 -0.13 4.00 -10.26 -0.04 -0.17 16 16 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 17 C -0.12 0.01 7.47 31.12 0.23 0.24 16 18 C 0.08 0.02 5.21 31.18 0.16 0.18 16 19 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 20 O -0.58 -1.70 13.68 -148.98 -2.04 -3.74 16 21 C -0.17 -0.36 7.48 31.18 0.23 -0.12 16 22 H 0.06 -0.17 7.66 -2.39 -0.02 -0.19 16 23 H 0.07 -0.25 7.66 -2.39 -0.02 -0.27 16 24 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.16 -0.14 6.30 -2.91 -0.02 -0.16 16 26 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.07 -0.17 8.08 -2.39 -0.02 -0.19 16 28 H 0.07 0.00 6.19 -2.39 -0.01 -0.01 16 29 H 0.10 -0.42 7.38 -2.39 -0.02 -0.43 16 30 H 0.39 -2.29 8.74 -74.06 -0.65 -2.94 16 31 H -0.28 -0.74 7.11 99.48 0.71 -0.03 16 32 H -0.30 -2.00 6.75 99.48 0.67 -1.33 16 33 H 0.14 0.63 3.13 -2.91 -0.01 0.62 16 34 H 0.08 0.03 7.65 -2.39 -0.02 0.01 16 35 H 0.05 0.28 7.41 -2.39 -0.02 0.26 16 36 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.08 0.14 8.10 -2.39 -0.02 0.12 16 38 H 0.39 -2.02 9.12 -74.06 -0.68 -2.70 16 39 H 0.08 0.37 7.92 -2.38 -0.02 0.35 16 40 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -18.46 324.65 -0.33 -18.79 By element: Atomic # 1 Polarization: -8.05 SS G_CDS: -0.25 Total: -8.30 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 3.27 Total: 2.10 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -5.42 Total: -14.44 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: 2.07 Total: 1.85 kcal Total: -18.46 -0.33 -18.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_34_14060148_11354860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.462 kcal (2) G-P(sol) polarization free energy of solvation -18.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds