Wall clock time and date at job start Tue Mar 9 2021 13:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34773 * 1 3 3 O 1.21280 * 120.00172 * 2 1 4 4 C 1.50700 * 120.00116 * 179.97438 * 2 1 3 5 5 H 1.09004 * 112.84492 * 48.80473 * 4 2 1 6 6 C 1.53778 * 113.61595 * 180.02562 * 4 2 1 7 7 C 1.53787 * 87.07889 * 139.98555 * 6 4 2 8 8 H 1.08992 * 113.61329 * 89.20529 * 7 6 4 9 9 N 1.46505 * 113.60620 * 220.01803 * 7 6 4 10 10 S 1.65598 * 119.99587 * 215.49208 * 9 7 6 11 11 O 1.42095 * 106.40717 * 311.41063 * 10 9 7 12 12 O 1.42098 * 106.40533 * 178.48906 * 10 9 7 13 13 C 1.76205 * 107.21597 * 64.95049 * 10 9 7 14 14 C 1.38209 * 119.99995 * 63.80621 * 13 10 9 15 15 C 1.50697 * 119.99900 * 359.97265 * 14 13 10 16 16 O 1.42904 * 109.47395 * 76.13964 * 15 14 13 17 17 Si 1.86300 * 109.47263 * 196.13688 * 15 14 13 18 18 C 1.38255 * 120.00064 * 180.02562 * 14 13 10 19 19 C 1.38215 * 119.99931 * 359.94619 * 18 14 13 20 20 C 1.38254 * 119.99912 * 0.05488 * 19 18 14 21 21 C 1.38209 * 119.99895 * 359.96686 * 20 19 18 22 22 C 1.53775 * 87.07923 * 334.56498 * 7 6 4 23 23 H 0.97002 * 120.00384 * 180.02562 * 1 2 3 24 24 H 0.97006 * 119.99916 * 359.97438 * 1 2 3 25 25 H 1.08999 * 113.61351 * 25.43342 * 6 4 2 26 26 H 1.08997 * 113.61391 * 254.53203 * 6 4 2 27 27 H 0.96995 * 120.00491 * 35.50512 * 9 7 6 28 28 H 1.08998 * 109.47601 * 316.13691 * 15 14 13 29 29 H 0.96707 * 113.99437 * 65.18584 * 16 15 14 30 30 H 1.48503 * 109.99940 * 58.68259 * 17 15 14 31 31 H 1.48505 * 110.00457 * 180.02562 * 17 15 14 32 32 H 1.08005 * 120.00085 * 179.97438 * 18 14 13 33 33 H 1.08005 * 119.99670 * 180.32184 * 19 18 14 34 34 H 1.08004 * 119.99797 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.99471 * 180.02562 * 21 20 19 36 36 H 1.09005 * 113.61076 * 139.98635 * 22 7 6 37 37 H 1.08993 * 113.61778 * 270.88360 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1013 -1.3051 0.0006 5 1 1.7399 -2.0027 -0.7550 6 6 3.6295 -1.1341 0.0011 7 6 3.6820 -2.3116 0.9890 8 1 3.7549 -3.2851 0.5043 9 7 4.6650 -2.1347 2.0609 10 16 5.5011 -3.4410 2.6412 11 8 4.5369 -4.4523 2.8992 12 8 6.3879 -2.9415 3.6329 13 6 6.5107 -4.0397 1.3270 14 6 7.5165 -3.2447 0.8110 15 6 7.7494 -1.8655 1.3718 16 8 8.4201 -1.9695 2.6293 17 14 8.7994 -0.8827 0.1876 18 6 8.3084 -3.7143 -0.2205 19 6 8.0947 -4.9793 -0.7349 20 6 7.0885 -5.7745 -0.2186 21 6 6.2967 -5.3049 0.8122 22 6 2.2495 -1.9302 1.3977 23 1 -0.4851 -0.8400 0.0004 24 1 -0.4850 0.8401 0.0004 25 1 3.9629 -0.1891 0.4300 26 1 4.0934 -1.3504 -0.9612 27 1 4.8258 -1.2526 2.4307 28 1 6.7921 -1.3634 1.5111 29 1 9.3136 -2.3348 2.5695 30 1 8.1275 -0.7941 -1.1338 31 1 9.0369 0.4795 0.7294 32 1 9.0941 -3.0928 -0.6241 33 1 8.7167 -5.3481 -1.5372 34 1 6.9214 -6.7629 -0.6208 35 1 5.5110 -5.9264 1.2157 36 1 1.5993 -2.7894 1.5629 37 1 2.2057 -1.2030 2.2084 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11684970_2726874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:52 Heat of formation + Delta-G solvation = -86.920137 kcal Electronic energy + Delta-G solvation = -24934.035412 eV Core-core repulsion = 21191.747271 eV Total energy + Delta-G solvation = -3742.288141 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37767 -40.64137 -38.98639 -38.44315 -37.43499 -36.94868 -34.75205 -34.08663 -32.75354 -32.35799 -27.11215 -26.83092 -26.73877 -24.38349 -22.76833 -22.38804 -21.05280 -20.37646 -19.32051 -18.54069 -18.36929 -18.03517 -17.89515 -17.11831 -16.84067 -16.43205 -16.31514 -15.99453 -15.71859 -15.52875 -15.41289 -14.97148 -14.63387 -14.27624 -13.99984 -13.86105 -13.61464 -13.54054 -13.45594 -13.20336 -13.08998 -12.76215 -12.32268 -12.23605 -12.20451 -12.02780 -11.94771 -11.54026 -10.96824 -10.69990 -10.56748 -10.47122 -10.41264 -10.02421 -5.08220 -0.70715 -0.25526 0.17035 1.16654 1.54672 1.60119 1.86870 1.92312 2.42134 2.61472 2.67780 3.26740 3.34517 3.39959 3.43623 3.54556 3.66467 3.77086 3.85119 3.95886 4.04527 4.18410 4.29334 4.34027 4.37852 4.60869 4.63578 4.64576 4.71453 4.82857 4.91161 4.93741 5.03012 5.20422 5.33092 5.35652 5.79346 5.84055 5.84680 6.43716 6.77190 7.30676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.521 3.479 3 O -0.597 6.597 4 C -0.131 4.131 5 H 0.154 0.846 6 C -0.130 4.130 7 C 0.125 3.875 8 H 0.135 0.865 9 N -1.102 6.102 10 S 2.690 3.310 11 O -0.988 6.988 12 O -0.961 6.961 13 C -0.667 4.667 14 C -0.025 4.025 15 C -0.126 4.126 16 O -0.525 6.525 17 Si 0.788 3.212 18 C -0.138 4.138 19 C -0.053 4.053 20 C -0.136 4.136 21 C -0.038 4.038 22 C -0.132 4.132 23 H 0.419 0.581 24 H 0.404 0.596 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.423 0.577 28 H 0.105 0.895 29 H 0.389 0.611 30 H -0.271 1.271 31 H -0.295 1.295 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.106 0.894 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -5.075 -7.600 9.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.307 3.693 3 O -0.478 6.478 4 C -0.152 4.152 5 H 0.171 0.829 6 C -0.170 4.170 7 C 0.018 3.982 8 H 0.153 0.847 9 N -0.862 5.862 10 S 2.782 3.218 11 O -0.978 6.978 12 O -0.950 6.950 13 C -0.756 4.756 14 C -0.027 4.027 15 C -0.235 4.235 16 O -0.332 6.332 17 Si 0.691 3.309 18 C -0.156 4.156 19 C -0.071 4.071 20 C -0.155 4.155 21 C -0.057 4.057 22 C -0.172 4.172 23 H 0.251 0.749 24 H 0.235 0.765 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.260 0.740 28 H 0.123 0.877 29 H 0.237 0.763 30 H -0.197 1.197 31 H -0.223 1.223 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.177 0.823 35 H 0.163 0.837 36 H 0.124 0.876 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.043 -4.113 -7.080 8.188 hybrid contribution -0.892 0.485 0.038 1.016 sum -0.934 -3.628 -7.042 7.976 Atomic orbital electron populations 1.43817 1.06467 1.13806 1.75977 1.20848 0.83405 0.91136 0.73902 1.90744 1.69481 1.35491 1.52083 1.22677 0.96108 0.95014 1.01426 0.82872 1.23321 0.94300 0.98722 1.00658 1.22476 0.87664 1.00622 0.87419 0.84717 1.55545 1.53700 1.25323 1.51638 1.01807 0.73111 0.72920 0.73938 1.93543 1.61320 1.58917 1.83998 1.93687 1.65295 1.79481 1.56587 1.30509 1.15968 1.05855 1.23248 1.20092 0.93193 0.95159 0.94274 1.25778 1.04418 0.97770 0.95564 1.86836 1.33398 1.86741 1.26194 0.93712 0.85766 0.77221 0.74188 1.21463 1.00028 0.97706 0.96413 1.21928 0.95160 0.92473 0.97510 1.21727 0.95674 1.01725 0.96360 1.21242 0.97893 0.92594 0.94016 1.23422 0.97034 1.01748 0.94996 0.74929 0.76495 0.89833 0.89000 0.74012 0.87736 0.76257 1.19667 1.22323 0.81917 0.81403 0.82339 0.83702 0.87595 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 4.66 8.87 -173.54 -1.54 3.12 16 2 C 0.52 0.80 7.63 87.66 0.67 1.47 16 3 O -0.60 -7.34 16.74 -3.03 -0.05 -7.39 16 4 C -0.13 0.61 4.15 -11.02 -0.05 0.56 16 5 H 0.15 -1.73 8.14 -2.39 -0.02 -1.74 16 6 C -0.13 0.25 7.19 31.12 0.22 0.48 16 7 C 0.13 -0.35 4.35 45.52 0.20 -0.16 16 8 H 0.14 -0.86 8.05 -2.39 -0.02 -0.88 16 9 N -1.10 -1.06 4.51 -167.19 -0.75 -1.82 16 10 S 2.69 17.22 4.92 -56.49 -0.28 16.94 16 11 O -0.99 -10.51 16.73 -128.00 -2.14 -12.65 16 12 O -0.96 -12.85 15.04 -119.20 -1.79 -14.64 16 13 C -0.67 -1.67 5.88 22.27 0.13 -1.54 16 14 C -0.03 0.00 5.27 -19.87 -0.10 -0.11 16 15 C -0.13 -0.16 1.87 71.24 0.13 -0.02 16 16 O -0.53 -2.36 10.64 -127.55 -1.36 -3.72 16 17 Si 0.79 -2.15 29.85 68.60 2.05 -0.10 16 18 C -0.14 0.72 8.66 22.27 0.19 0.91 16 19 C -0.05 0.37 10.05 22.27 0.22 0.60 16 20 C -0.14 0.67 10.05 22.27 0.22 0.89 16 21 C -0.04 0.01 9.55 22.27 0.21 0.22 16 22 C -0.13 0.53 7.43 31.12 0.23 0.76 16 23 H 0.42 -5.14 8.83 -92.71 -0.82 -5.96 16 24 H 0.40 -2.26 8.93 -92.70 -0.83 -3.08 16 25 H 0.08 0.23 7.43 -2.39 -0.02 0.21 16 26 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.42 -0.05 8.60 -96.75 -0.83 -0.88 16 28 H 0.11 0.21 5.76 -2.39 -0.01 0.19 16 29 H 0.39 -1.72 8.61 -74.05 -0.64 -2.36 16 30 H -0.27 -0.11 7.11 99.48 0.71 0.60 16 31 H -0.30 -1.57 7.11 99.48 0.71 -0.86 16 32 H 0.16 -1.82 5.17 -2.91 -0.02 -1.84 16 33 H 0.17 -2.25 8.06 -2.91 -0.02 -2.28 16 34 H 0.16 -1.56 8.06 -2.91 -0.02 -1.59 16 35 H 0.15 -0.14 7.34 -2.91 -0.02 -0.16 16 36 H 0.11 -0.77 8.14 -2.38 -0.02 -0.78 16 37 H 0.08 -0.11 8.09 -2.39 -0.02 -0.13 16 Total: 0.00 -32.66 320.93 -5.49 -38.15 By element: Atomic # 1 Polarization: -20.04 SS G_CDS: -1.91 Total: -21.95 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 2.29 Total: 4.07 kcal Atomic # 7 Polarization: 3.59 SS G_CDS: -2.29 Total: 1.30 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -5.34 Total: -38.41 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.05 Total: -0.10 kcal Atomic # 16 Polarization: 17.22 SS G_CDS: -0.28 Total: 16.94 kcal Total: -32.66 -5.49 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11684970_2726874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.771 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds