Wall clock time and date at job start Tue Mar 9 2021 13:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34222 * 117.00094 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00135 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99985 * 179.97438 * 4 3 2 7 7 H 1.09005 * 112.84876 * 48.80391 * 6 4 3 8 8 C 1.53785 * 113.61305 * 179.97438 * 6 4 3 9 9 C 1.53790 * 87.07770 * 139.98344 * 8 6 4 10 10 F 1.39900 * 113.61373 * 89.20192 * 9 8 6 11 11 C 1.52997 * 113.61304 * 220.01845 * 9 8 6 12 12 S 1.81395 * 109.47317 * 179.97438 * 11 9 8 13 13 O 1.42103 * 110.54355 * 291.62947 * 12 11 9 14 14 O 1.42107 * 110.53850 * 68.37616 * 12 11 9 15 15 O 1.52193 * 104.45366 * 180.02562 * 12 11 9 16 16 C 1.35994 * 113.99839 * 75.00121 * 15 12 11 17 17 C 1.39150 * 120.07362 * 90.00573 * 16 15 12 18 18 O 1.35998 * 120.07193 * 359.97438 * 17 16 15 19 19 C 1.42904 * 116.99859 * 180.02562 * 18 17 16 20 20 C 1.38567 * 119.85304 * 180.02562 * 17 16 15 21 21 C 1.38241 * 120.00271 * 359.97438 * 20 17 16 22 22 C 1.50692 * 119.92705 * 179.97438 * 21 20 17 23 23 C 1.38249 * 120.14346 * 359.97438 * 21 20 17 24 24 C 1.50705 * 119.92806 * 180.02562 * 23 21 20 25 25 O 1.42900 * 109.46776 * 284.99531 * 24 23 21 26 26 Si 1.86291 * 109.47414 * 164.99692 * 24 23 21 27 27 C 1.38249 * 120.14875 * 359.75767 * 23 21 20 28 28 C 1.53779 * 87.08148 * 334.56778 * 9 8 6 29 29 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 30 30 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 34 34 H 1.08999 * 113.61690 * 254.52984 * 8 6 4 35 35 H 1.08995 * 113.61312 * 25.35177 * 8 6 4 36 36 H 1.08997 * 109.47273 * 300.00145 * 11 9 8 37 37 H 1.09008 * 109.47111 * 60.00110 * 11 9 8 38 38 H 1.08993 * 109.47089 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.46978 * 300.00295 * 19 18 17 40 40 H 1.09004 * 109.46903 * 59.99989 * 19 18 17 41 41 H 1.08004 * 119.99779 * 179.97438 * 20 17 16 42 42 H 1.09000 * 109.47171 * 90.00816 * 22 21 20 43 43 H 1.09003 * 109.47140 * 210.00481 * 22 21 20 44 44 H 1.09001 * 109.47805 * 330.00334 * 22 21 20 45 45 H 1.08998 * 109.46794 * 44.99339 * 24 23 21 46 46 H 0.96701 * 114.00359 * 299.99760 * 25 24 23 47 47 H 1.48499 * 110.00375 * 58.67848 * 26 24 23 48 48 H 1.48495 * 110.00107 * 179.97438 * 26 24 23 49 49 H 1.07998 * 120.00139 * 180.26090 * 27 23 21 50 50 H 1.08999 * 113.61440 * 270.88730 * 28 9 8 51 51 H 1.09003 * 113.61525 * 139.97962 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.4713 3.5817 0.7547 8 6 5.4582 2.9682 -0.0011 9 6 5.3564 4.1422 -0.9892 10 9 5.2849 5.3934 -0.3675 11 6 6.3985 4.0935 -2.1083 12 16 6.1771 5.5225 -3.2034 13 8 4.9595 5.4118 -3.9277 14 8 6.5221 6.7252 -2.5297 15 8 7.2588 5.3611 -4.2619 16 6 6.9930 4.3952 -5.1815 17 6 6.3002 4.7126 -6.3458 18 8 5.8869 5.9893 -6.5663 19 6 5.1808 6.2417 -7.7828 20 6 6.0314 3.7246 -7.2795 21 6 6.4517 2.4272 -7.0536 22 6 6.1579 1.3540 -8.0699 23 6 7.1409 2.1121 -5.8973 24 6 7.5974 0.6962 -5.6562 25 8 6.4766 -0.1087 -5.2847 26 14 8.8587 0.6752 -4.2854 27 6 7.4172 3.0941 -4.9642 28 6 3.9862 3.5764 -1.3984 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 5.8894 3.2437 0.9613 35 1 5.9127 2.0744 -0.4283 36 1 7.3984 4.1188 -1.6750 37 1 6.2740 3.1745 -2.6811 38 1 4.9100 7.2962 -7.8336 39 1 5.8168 5.9890 -8.6312 40 1 4.2775 5.6323 -7.8117 41 1 5.4935 3.9683 -8.1838 42 1 6.9757 1.3005 -8.7885 43 1 6.0548 0.3936 -7.5647 44 1 5.2308 1.5915 -8.5915 45 1 8.0442 0.2985 -6.5674 46 1 6.0289 0.1876 -4.4804 47 1 8.2714 1.2446 -3.0460 48 1 9.3163 -0.7156 -4.0376 49 1 7.9595 2.8461 -4.0638 50 1 4.0384 2.8495 -2.2089 51 1 3.2291 4.3429 -1.5640 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_14060150_16464788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:39 Heat of formation + Delta-G solvation = -238.551438 kcal Electronic energy + Delta-G solvation = -41535.501594 eV Core-core repulsion = 36025.376639 eV Total energy + Delta-G solvation = -5510.124954 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.29031 -42.61716 -41.91549 -40.40818 -39.56694 -39.40654 -38.49136 -37.60442 -37.40028 -37.25622 -33.49985 -32.85720 -32.29133 -31.95042 -28.92244 -28.14993 -27.37138 -27.01047 -26.10224 -24.13786 -23.76652 -23.09711 -22.36120 -21.46288 -20.94417 -19.82077 -19.30804 -19.17343 -18.83347 -18.51690 -18.08581 -17.84387 -17.68116 -17.43347 -17.19495 -16.81754 -16.57622 -16.34221 -16.30653 -16.15254 -15.86699 -15.78083 -15.42679 -15.34459 -14.74102 -14.68248 -14.56211 -14.47022 -14.38503 -14.12210 -14.03760 -13.73867 -13.71778 -13.62764 -13.48473 -13.40973 -13.15072 -13.11167 -13.03350 -13.00517 -13.00479 -12.86509 -12.57556 -12.51460 -12.35393 -12.21275 -12.00147 -11.91987 -11.77161 -11.61467 -11.57233 -11.46162 -10.62937 -10.12650 -9.43664 -4.94147 -1.29881 -0.19472 -0.03816 0.85468 0.92915 1.25370 1.49217 1.50086 1.93111 2.02323 2.15840 2.32461 2.56307 2.65416 2.71206 2.83240 3.09526 3.17838 3.34197 3.40073 3.42678 3.54353 3.63521 3.75400 3.81506 3.92518 3.93941 3.99564 4.02691 4.16549 4.23168 4.24681 4.27674 4.29049 4.32746 4.34964 4.51755 4.56714 4.59439 4.62761 4.65193 4.66516 4.72752 4.77910 4.82377 4.86115 4.91740 4.94561 5.08870 5.16814 5.33778 5.35702 5.45641 6.09632 6.48135 6.54262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.478 3.522 5 O -0.528 6.528 6 C -0.108 4.108 7 H 0.151 0.849 8 C -0.115 4.115 9 C 0.093 3.907 10 F -0.187 7.187 11 C -0.666 4.666 12 S 2.585 3.415 13 O -0.954 6.954 14 O -0.959 6.959 15 O -0.652 6.652 16 C -0.007 4.007 17 C 0.156 3.844 18 O -0.329 6.329 19 C 0.011 3.989 20 C -0.198 4.198 21 C 0.011 3.989 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.066 4.066 25 O -0.537 6.537 26 Si 0.726 3.274 27 C -0.089 4.089 28 C -0.146 4.146 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.184 0.816 37 H 0.179 0.821 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.169 0.831 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.139 0.861 46 H 0.386 0.614 47 H -0.258 1.258 48 H -0.296 1.296 49 H 0.168 0.832 50 H 0.128 0.872 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 -5.585 -5.012 7.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.322 3.678 5 O -0.418 6.418 6 C -0.127 4.127 7 H 0.168 0.832 8 C -0.154 4.154 9 C 0.073 3.927 10 F -0.167 7.167 11 C -0.793 4.793 12 S 2.683 3.317 13 O -0.953 6.953 14 O -0.957 6.957 15 O -0.611 6.611 16 C -0.050 4.050 17 C 0.107 3.893 18 O -0.242 6.242 19 C -0.083 4.083 20 C -0.216 4.216 21 C 0.010 3.990 22 C -0.186 4.186 23 C -0.138 4.138 24 C -0.176 4.176 25 O -0.345 6.345 26 Si 0.631 3.369 27 C -0.109 4.109 28 C -0.184 4.184 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.202 0.798 37 H 0.197 0.803 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.186 0.814 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.156 0.844 46 H 0.236 0.764 47 H -0.184 1.184 48 H -0.224 1.224 49 H 0.185 0.815 50 H 0.146 0.854 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.170 -5.515 -4.872 7.361 hybrid contribution -0.939 -0.198 0.919 1.329 sum -1.109 -5.714 -3.953 7.036 Atomic orbital electron populations 1.21841 0.90887 1.04291 1.03711 1.23297 0.96830 0.79053 1.02781 1.86532 1.24046 1.33803 1.83234 1.23546 0.80730 0.92188 0.71336 1.90669 1.60988 1.43669 1.46448 1.22579 0.97480 0.91138 1.01537 0.83178 1.23610 0.93554 0.97159 1.01044 1.21372 0.96139 0.81812 0.93386 1.92987 1.97118 1.42678 1.83901 1.31332 1.11164 1.23756 1.13054 1.05749 0.73784 0.76837 0.75336 1.93612 1.46889 1.87135 1.67627 1.93612 1.82963 1.43567 1.75579 1.85759 1.66614 1.60051 1.48681 1.17496 1.10562 0.86524 0.90396 1.19377 0.91607 0.85444 0.92915 1.86157 1.70147 1.24335 1.43531 1.23547 0.96470 1.04692 0.83577 1.21444 1.06876 0.92164 1.01162 1.20077 0.90731 0.94028 0.94146 1.21096 1.03676 0.96652 0.97131 1.19957 1.02789 0.96017 0.95055 1.24969 0.94927 0.87144 1.10512 1.86606 1.44522 1.54943 1.48450 0.94402 0.83886 0.81545 0.77098 1.21331 0.98327 0.89233 1.01996 1.23879 0.95698 1.02026 0.96787 0.91389 0.91268 0.88466 0.91204 0.90901 0.86956 0.85546 0.79822 0.80308 0.86728 0.89981 0.90751 0.81383 0.88418 0.89617 0.89952 0.84370 0.76442 1.18389 1.22361 0.81536 0.85387 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.43 16 3 O -0.36 -0.92 10.22 -51.34 -0.52 -1.44 16 4 C 0.48 1.23 7.48 71.24 0.53 1.76 16 5 O -0.53 -3.74 15.65 21.98 0.34 -3.39 16 6 C -0.11 0.18 4.24 -11.01 -0.05 0.13 16 7 H 0.15 -0.64 8.14 -2.38 -0.02 -0.66 16 8 C -0.12 0.32 6.86 31.13 0.21 0.54 16 9 C 0.09 0.02 1.62 -10.27 -0.02 0.00 16 10 F -0.19 -1.14 16.28 44.97 0.73 -0.41 16 11 C -0.67 1.22 5.19 71.98 0.37 1.60 16 12 S 2.59 21.53 4.89 -56.49 -0.28 21.25 16 13 O -0.95 -10.50 15.81 -117.13 -1.85 -12.35 16 14 O -0.96 -16.13 17.54 -118.57 -2.08 -18.21 16 15 O -0.65 -5.02 9.84 -60.50 -0.60 -5.61 16 16 C -0.01 -0.03 4.80 22.57 0.11 0.08 16 17 C 0.16 0.71 5.93 22.57 0.13 0.84 16 18 O -0.33 -2.35 9.72 -72.65 -0.71 -3.06 16 19 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 20 C -0.20 0.37 8.69 22.35 0.19 0.56 16 21 C 0.01 -0.05 5.88 -19.86 -0.12 -0.16 16 22 C -0.13 1.01 9.32 71.23 0.66 1.67 16 23 C -0.14 0.60 5.26 -19.86 -0.10 0.49 16 24 C -0.07 0.41 1.88 71.24 0.13 0.55 16 25 O -0.54 2.13 11.92 -148.98 -1.78 0.36 16 26 Si 0.73 -4.30 30.23 68.60 2.07 -2.22 16 27 C -0.09 0.22 7.07 22.35 0.16 0.38 16 28 C -0.15 0.24 7.08 31.12 0.22 0.46 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.07 0.00 8.13 -2.39 -0.02 -0.02 16 33 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 34 H 0.11 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.13 -0.50 7.39 -2.39 -0.02 -0.52 16 36 H 0.18 -1.36 8.14 -2.39 -0.02 -1.37 16 37 H 0.18 -1.45 6.43 -2.39 -0.02 -1.46 16 38 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.08 -0.57 7.66 -2.39 -0.02 -0.59 16 40 H 0.07 -0.37 7.66 -2.38 -0.02 -0.38 16 41 H 0.17 -1.17 6.30 -2.91 -0.02 -1.19 16 42 H 0.10 -1.01 8.14 -2.39 -0.02 -1.02 16 43 H 0.09 -0.54 6.19 -2.39 -0.01 -0.55 16 44 H 0.08 -0.74 8.08 -2.39 -0.02 -0.76 16 45 H 0.14 -1.22 7.38 -2.39 -0.02 -1.24 16 46 H 0.39 -3.45 8.70 -74.06 -0.64 -4.09 16 47 H -0.26 1.43 6.69 99.48 0.67 2.09 16 48 H -0.30 -0.70 7.11 99.48 0.71 0.00 16 49 H 0.17 -1.25 4.32 -2.91 -0.01 -1.27 16 50 H 0.13 -0.62 7.91 -2.39 -0.02 -0.64 16 51 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: 0.00 -30.02 431.06 0.43 -29.59 By element: Atomic # 1 Polarization: -16.61 SS G_CDS: 0.34 Total: -16.26 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 4.75 Total: 11.76 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -7.19 Total: -43.71 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.73 Total: -0.41 kcal Atomic # 14 Polarization: -4.30 SS G_CDS: 2.07 Total: -2.22 kcal Atomic # 16 Polarization: 21.53 SS G_CDS: -0.28 Total: 21.25 kcal Total: -30.02 0.43 -29.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_14060150_16464788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.957 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds