Wall clock time and date at job start Tue Mar 9 2021 13:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.33388 * 125.20816 * 65.00041 * 4 2 1 6 6 C 1.38420 * 114.92511 * 179.97438 * 5 4 2 7 7 S 1.76201 * 122.53853 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.40246 * 203.54384 * 7 6 5 9 9 O 1.42098 * 106.40319 * 336.46422 * 7 6 5 10 10 N 1.65596 * 107.21990 * 90.00474 * 7 6 5 11 11 C 1.46501 * 119.99944 * 64.99377 * 10 7 6 12 12 H 1.09002 * 112.85014 * 13.81255 * 11 10 7 13 13 C 1.53787 * 113.60975 * 145.00135 * 11 10 7 14 14 C 1.53779 * 87.07918 * 89.11955 * 13 11 10 15 15 O 1.42901 * 113.61520 * 270.79745 * 14 13 11 16 16 C 1.53004 * 113.61631 * 139.97795 * 14 13 11 17 17 F 1.39901 * 109.46943 * 60.00082 * 16 14 13 18 18 F 1.39897 * 109.47554 * 179.97438 * 16 14 13 19 19 F 1.39908 * 109.47057 * 300.00344 * 16 14 13 20 20 C 1.53776 * 113.61797 * 242.50024 * 11 10 7 21 21 C 1.33387 * 114.92396 * 0.02562 * 6 5 4 22 22 S 1.75890 * 109.59018 * 359.75619 * 21 6 5 23 23 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 24 24 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 25 25 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 26 26 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 27 27 H 1.08008 * 122.53471 * 359.96267 * 5 4 2 28 28 H 0.97005 * 120.00349 * 245.00465 * 10 7 6 29 29 H 1.09000 * 113.61351 * 203.66457 * 13 11 10 30 30 H 1.08996 * 113.61861 * 334.48768 * 13 11 10 31 31 H 0.96700 * 113.99744 * 179.97438 * 15 14 13 32 32 H 1.08997 * 113.61282 * 25.43034 * 20 11 10 33 33 H 1.09001 * 113.61597 * 156.33959 * 20 11 10 34 34 H 1.07999 * 125.20818 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.7533 -2.0050 1.4977 6 6 2.3061 -2.4357 2.6914 7 16 2.1898 -4.1055 3.2417 8 8 2.3429 -4.0741 4.6541 9 8 1.0537 -4.6628 2.5953 10 7 3.5085 -4.9109 2.6463 11 6 4.8543 -4.5451 3.0949 12 1 4.8471 -3.9099 3.9807 13 6 5.8142 -5.7418 3.2027 14 6 6.1767 -5.4829 1.7308 15 8 5.3391 -6.1773 0.8043 16 6 7.6667 -5.6528 1.4276 17 9 8.0578 -6.9616 1.7299 18 9 7.8986 -5.3988 0.0715 19 9 8.4061 -4.7540 2.2040 20 6 5.7588 -4.0218 1.9667 21 6 2.9326 -1.4907 3.3940 22 16 2.8476 0.0397 2.5312 23 1 -0.3934 0.4417 0.7649 24 1 1.7924 -0.5139 -0.8899 25 1 3.5346 1.7703 0.0322 26 1 1.5616 2.4678 -1.2086 27 1 1.2182 -2.6670 0.8329 28 1 3.3899 -5.6248 2.0003 29 1 6.6423 -5.5765 3.8919 30 1 5.3089 -6.6932 3.3685 31 1 5.5621 -6.0181 -0.1231 32 1 5.2087 -3.5851 1.1331 33 1 6.5718 -3.3864 2.3180 34 1 3.4207 -1.6428 4.3453 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17047582_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:26 Heat of formation + Delta-G solvation = -235.456099 kcal Electronic energy + Delta-G solvation = -28942.242511 eV Core-core repulsion = 24067.955739 eV Total energy + Delta-G solvation = -4874.286772 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.019 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.22803 -48.77452 -48.71047 -41.05555 -39.46016 -38.41204 -37.53213 -37.04227 -36.59289 -33.62459 -31.81358 -28.56507 -27.18686 -27.10312 -24.89843 -24.11474 -21.48844 -21.27172 -20.50495 -19.85117 -19.52352 -19.40900 -19.07812 -18.55845 -17.86787 -17.64186 -17.16760 -16.96625 -16.31402 -16.16374 -15.77181 -15.59469 -15.44948 -15.38125 -15.15456 -15.00085 -14.90838 -14.88451 -14.78557 -14.33191 -14.23916 -14.02707 -14.01237 -13.92640 -13.35880 -13.26493 -13.20587 -12.91644 -12.82104 -12.60157 -12.54279 -12.20356 -11.90102 -11.62145 -11.17765 -10.71375 -10.57816 -10.16425 -9.79751 -5.17822 -0.80926 -0.45035 0.37158 0.61744 0.97924 1.19091 1.53866 1.54183 1.85223 1.97225 2.46242 2.60454 2.66222 2.70728 2.89046 3.19501 3.38954 3.44374 3.45352 3.56116 3.67012 3.93191 4.06979 4.21195 4.26753 4.37987 4.52292 4.54442 4.67380 4.75486 4.86286 4.93380 5.05477 5.13516 5.97425 6.30368 6.63762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.034 4.034 3 Si 0.731 3.269 4 C -0.237 4.237 5 C -0.056 4.056 6 C -0.692 4.692 7 S 2.727 3.273 8 O -0.976 6.976 9 O -0.989 6.989 10 N -1.086 6.086 11 C 0.132 3.868 12 H 0.140 0.860 13 C -0.127 4.127 14 C 0.063 3.937 15 O -0.520 6.520 16 C 0.431 3.569 17 F -0.187 7.187 18 F -0.189 7.189 19 F -0.175 7.175 20 C -0.168 4.168 21 C -0.083 4.083 22 S 0.197 5.803 23 H 0.397 0.603 24 H 0.122 0.878 25 H -0.257 1.257 26 H -0.273 1.273 27 H 0.146 0.854 28 H 0.429 0.571 29 H 0.138 0.862 30 H 0.099 0.901 31 H 0.403 0.597 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 5.334 1.454 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.147 4.147 3 Si 0.633 3.367 4 C -0.355 4.355 5 C -0.085 4.085 6 C -0.794 4.794 7 S 2.816 3.184 8 O -0.966 6.966 9 O -0.979 6.979 10 N -0.848 5.848 11 C 0.024 3.976 12 H 0.158 0.842 13 C -0.166 4.166 14 C 0.019 3.981 15 O -0.329 6.329 16 C 0.376 3.624 17 F -0.169 7.169 18 F -0.170 7.170 19 F -0.156 7.156 20 C -0.207 4.207 21 C -0.223 4.223 22 S 0.461 5.539 23 H 0.247 0.753 24 H 0.139 0.861 25 H -0.182 1.182 26 H -0.199 1.199 27 H 0.164 0.836 28 H 0.268 0.732 29 H 0.156 0.844 30 H 0.118 0.882 31 H 0.255 0.745 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.432 6.667 1.908 7.737 hybrid contribution 0.325 -1.872 -2.040 2.787 sum 3.757 4.795 -0.132 6.093 Atomic orbital electron populations 1.86513 1.16885 1.82144 1.50381 1.24617 0.85209 1.09881 0.94973 0.94176 0.79548 0.74998 0.87980 1.25156 1.09012 0.98265 1.03039 1.19614 0.98201 0.95594 0.95048 1.29725 1.16915 1.25322 1.07414 1.00774 0.71870 0.72885 0.72861 1.93581 1.86207 1.87118 1.29646 1.93573 1.49236 1.77877 1.77203 1.55196 1.18846 1.49876 1.60840 1.21625 0.80713 0.97368 0.97903 0.84199 1.23669 1.01015 1.01339 0.90622 1.23719 0.82074 0.97605 0.94683 1.86544 1.54883 1.70785 1.20717 1.21581 0.92996 0.73691 0.74114 1.93206 1.92818 1.38010 1.92856 1.93176 1.95829 1.93908 1.34099 1.93184 1.79672 1.67851 1.74931 1.24355 1.01464 0.93609 1.01274 1.26299 0.97470 0.95698 1.02783 1.84253 1.48992 1.09976 1.10706 0.75322 0.86084 1.18209 1.19863 0.83626 0.73221 0.84444 0.88237 0.74455 0.87839 0.84932 0.77308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.42 12.88 -148.98 -1.92 -1.50 16 2 C -0.03 0.09 2.96 71.24 0.21 0.30 16 3 Si 0.73 -3.26 30.98 68.60 2.13 -1.14 16 4 C -0.24 0.60 5.70 24.59 0.14 0.74 16 5 C -0.06 0.01 9.59 21.22 0.20 0.21 16 6 C -0.69 1.22 5.86 21.21 0.12 1.34 16 7 S 2.73 3.35 5.77 -56.49 -0.33 3.02 16 8 O -0.98 -5.31 17.16 -128.00 -2.20 -7.50 16 9 O -0.99 -9.16 17.63 -128.00 -2.26 -11.41 16 10 N -1.09 4.61 5.68 -167.19 -0.95 3.66 16 11 C 0.13 -1.04 4.51 45.52 0.21 -0.84 16 12 H 0.14 -1.65 7.77 -2.39 -0.02 -1.67 16 13 C -0.13 0.91 7.05 31.12 0.22 1.13 16 14 C 0.06 -0.38 1.36 -10.26 -0.01 -0.39 16 15 O -0.52 2.86 12.00 -148.98 -1.79 1.07 16 16 C 0.43 -0.97 2.85 71.98 0.21 -0.76 16 17 F -0.19 -0.36 17.18 44.97 0.77 0.41 16 18 F -0.19 0.13 16.65 44.97 0.75 0.88 16 19 F -0.17 0.41 15.75 44.97 0.71 1.11 16 20 C -0.17 1.59 7.15 31.12 0.22 1.81 16 21 C -0.08 0.48 10.70 66.72 0.71 1.19 16 22 S 0.20 -1.25 20.59 -56.49 -1.16 -2.42 16 23 H 0.40 -3.40 8.70 -74.06 -0.64 -4.05 16 24 H 0.12 -0.30 7.96 -2.39 -0.02 -0.32 16 25 H -0.26 0.35 7.11 99.48 0.71 1.06 16 26 H -0.27 -0.66 7.11 99.48 0.71 0.05 16 27 H 0.15 0.21 7.97 -2.91 -0.02 0.19 16 28 H 0.43 -1.88 7.53 -96.74 -0.73 -2.61 16 29 H 0.14 -1.43 7.88 -2.39 -0.02 -1.45 16 30 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.40 -4.22 8.42 -74.06 -0.62 -4.84 16 32 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H 0.13 -1.61 7.13 -2.39 -0.02 -1.63 16 34 H 0.21 -2.32 8.00 -2.91 -0.02 -2.35 16 Total: 0.00 -23.54 331.88 -4.76 -28.29 By element: Atomic # 1 Polarization: -18.48 SS G_CDS: -0.74 Total: -19.22 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 2.23 Total: 4.73 kcal Atomic # 7 Polarization: 4.61 SS G_CDS: -0.95 Total: 3.66 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -8.16 Total: -19.34 kcal Atomic # 9 Polarization: 0.18 SS G_CDS: 2.23 Total: 2.41 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: 2.13 Total: -1.14 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.49 Total: 0.61 kcal Total: -23.54 -4.76 -28.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17047582_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.163 kcal (2) G-P(sol) polarization free energy of solvation -23.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds