Wall clock time and date at job start Tue Mar 9 2021 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33383 * 125.20925 * 2 1 4 4 C 1.50700 * 122.53833 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.47252 * 221.65580 * 4 3 2 6 6 Si 1.86300 * 109.47197 * 341.65545 * 4 3 2 7 7 C 1.38429 * 114.92679 * 179.79468 * 3 2 1 8 8 S 1.76193 * 122.54374 * 180.27789 * 7 3 2 9 9 O 1.42098 * 106.40457 * 165.76192 * 8 7 3 10 10 O 1.42099 * 106.39892 * 298.67737 * 8 7 3 11 11 N 1.65603 * 107.21996 * 52.21890 * 8 7 3 12 12 C 1.47215 * 136.17881 * 262.53144 * 11 8 7 13 13 C 1.53920 * 88.09021 * 153.63620 * 12 11 8 14 14 C 1.46284 * 136.18016 * 82.90306 * 11 8 7 15 15 C 1.53071 * 120.98203 * 80.58957 * 14 11 8 16 16 C 1.53919 * 86.84489 * 259.66771 * 15 14 11 17 17 C 1.52999 * 113.66119 * 220.53168 * 16 15 14 18 18 F 1.39907 * 109.47181 * 277.70397 * 17 16 15 19 19 C 1.53072 * 120.98418 * 332.55469 * 14 11 8 20 20 C 1.33392 * 114.91412 * 0.42500 * 7 3 2 21 21 C 1.50702 * 125.19758 * 179.85726 * 20 7 3 22 22 S 1.75880 * 109.59501 * 359.60281 * 20 7 3 23 23 H 1.08993 * 109.47443 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46738 * 300.00364 * 1 2 3 25 25 H 1.09006 * 109.46698 * 59.99500 * 1 2 3 26 26 H 1.09007 * 109.47508 * 101.65407 * 4 3 2 27 27 H 0.96697 * 114.00030 * 66.37814 * 5 4 3 28 28 H 1.48494 * 110.00286 * 179.97438 * 6 4 3 29 29 H 1.48498 * 109.99750 * 301.31978 * 6 4 3 30 30 H 1.09003 * 113.43608 * 268.42098 * 12 11 8 31 31 H 1.09002 * 113.43566 * 38.74533 * 12 11 8 32 32 H 1.09000 * 114.49631 * 272.06203 * 13 12 11 33 33 H 1.08998 * 114.16786 * 139.09490 * 13 12 11 34 34 H 1.09001 * 113.65526 * 14.15408 * 15 14 11 35 35 H 1.09000 * 113.65269 * 145.18474 * 15 14 11 36 36 H 1.09003 * 113.58704 * 89.72316 * 16 15 14 37 37 H 1.08991 * 109.47511 * 37.70168 * 17 16 15 38 38 H 1.09000 * 109.46941 * 157.70646 * 17 16 15 39 39 H 1.08998 * 113.65232 * 214.81634 * 19 14 11 40 40 H 1.09001 * 113.64930 * 345.75319 * 19 14 11 41 41 H 1.09006 * 109.46614 * 179.72539 * 21 20 7 42 42 H 1.08995 * 109.47571 * 299.72200 * 21 20 7 43 43 H 1.09003 * 109.47002 * 59.73332 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 1.7053 2.4846 0.0006 5 8 2.4562 3.3069 -0.8949 6 14 -0.0731 2.4281 -0.5516 7 6 3.6381 0.8427 0.0045 8 16 4.8357 2.1349 0.0125 9 8 6.0763 1.5302 0.3509 10 8 4.6332 2.8771 -1.1822 11 7 4.4535 3.1499 1.2640 12 6 3.7286 4.4221 1.4164 13 6 3.4199 4.0130 2.8678 14 6 4.6922 3.1828 2.7069 15 6 6.0273 3.6718 3.2738 16 6 6.4026 2.1884 3.4409 17 6 7.1398 1.8849 4.7467 18 9 8.4979 2.1854 4.5962 19 6 4.8937 1.8903 3.5019 20 6 3.9750 -0.4479 -0.0008 21 6 5.3860 -0.9773 -0.0007 22 16 2.5208 -1.4372 -0.0007 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5140 -0.8900 26 1 1.7602 2.8993 1.0072 27 1 2.3727 3.0542 -1.8246 28 1 -0.6476 3.7974 -0.5548 29 1 -0.1645 1.8353 -1.9100 30 1 4.3715 5.2991 1.3406 31 1 2.8419 4.4939 0.7865 32 1 2.5116 3.4224 2.9874 33 1 3.5039 4.8266 3.5882 34 1 6.6442 4.1996 2.5465 35 1 5.9314 4.2076 4.2181 36 1 6.8964 1.7624 2.5675 37 1 6.7206 2.4907 5.5500 38 1 7.0263 0.8287 4.9910 39 1 4.4810 1.9282 4.5100 40 1 4.6016 0.9922 2.9578 41 1 5.3651 -2.0672 -0.0008 42 1 5.9069 -0.6238 -0.8905 43 1 5.9065 -0.6240 0.8895 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17321338_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:01 Heat of formation + Delta-G solvation = -39.681208 kcal Electronic energy + Delta-G solvation = -31284.519999 eV Core-core repulsion = 27081.473809 eV Total energy + Delta-G solvation = -4203.046190 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.085 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -48.38881 -41.77018 -40.32774 -38.33805 -37.03708 -36.78805 -36.61040 -34.73406 -31.00513 -29.78612 -29.02391 -28.07573 -27.00442 -25.94281 -24.44173 -23.26180 -21.98795 -21.27083 -20.51714 -19.26997 -18.61207 -17.94708 -17.72593 -17.28084 -17.11038 -16.83935 -16.66615 -16.57764 -16.38914 -16.15029 -15.65368 -15.28667 -15.08166 -14.89844 -14.67594 -14.46579 -14.33404 -14.01697 -13.94135 -13.63122 -13.51485 -13.44987 -13.32587 -13.10970 -13.03128 -12.96887 -12.77588 -12.70059 -12.52695 -12.05669 -11.99205 -11.78807 -11.70919 -11.54580 -11.49737 -11.39817 -10.87331 -10.71664 -10.06166 -9.93509 -9.52879 -4.81268 -0.63081 -0.40477 0.37044 0.68637 0.85881 1.23010 1.49350 1.89334 2.00955 2.87062 3.13590 3.24372 3.34725 3.35089 3.42397 3.46612 3.53305 3.58562 3.75194 3.84574 3.96772 4.00776 4.09199 4.11241 4.16461 4.18209 4.30864 4.38605 4.40160 4.48141 4.50882 4.56986 4.61103 4.66934 4.69328 4.76205 4.81586 4.90018 4.93462 4.99613 5.01279 5.10883 5.14726 5.15435 5.43905 5.69314 6.47774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.194 4.194 3 C -0.062 4.062 4 C -0.087 4.087 5 O -0.513 6.513 6 Si 0.653 3.347 7 C -0.675 4.675 8 S 2.737 3.263 9 O -0.959 6.959 10 O -0.933 6.933 11 N -1.011 6.011 12 C 0.129 3.871 13 C -0.142 4.142 14 C 0.165 3.835 15 C -0.130 4.130 16 C -0.153 4.153 17 C 0.073 3.927 18 F -0.217 7.217 19 C -0.137 4.137 20 C -0.055 4.055 21 C -0.111 4.111 22 S 0.159 5.841 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.385 0.615 28 H -0.242 1.242 29 H -0.270 1.270 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 -2.142 5.134 8.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.312 4.312 3 C -0.073 4.073 4 C -0.200 4.200 5 O -0.322 6.322 6 Si 0.556 3.444 7 C -0.773 4.773 8 S 2.827 3.173 9 O -0.950 6.950 10 O -0.923 6.923 11 N -0.848 5.848 12 C 0.005 3.995 13 C -0.182 4.182 14 C 0.076 3.924 15 C -0.169 4.169 16 C -0.172 4.172 17 C 0.018 3.982 18 F -0.198 7.198 19 C -0.175 4.175 20 C -0.176 4.176 21 C -0.169 4.169 22 S 0.425 5.575 23 H 0.116 0.884 24 H 0.125 0.875 25 H 0.115 0.885 26 H 0.147 0.853 27 H 0.236 0.764 28 H -0.167 1.167 29 H -0.197 1.197 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.472 -3.261 4.270 8.412 hybrid contribution 0.630 0.898 -0.948 1.449 sum -5.843 -2.363 3.322 7.124 Atomic orbital electron populations 1.20328 0.88013 1.04206 1.04344 1.24173 0.99703 0.95534 1.11796 1.18541 0.90653 0.96453 1.01648 1.24997 1.07750 0.87821 0.99389 1.86661 1.68715 1.55661 1.21139 0.94314 0.79635 0.82310 0.88134 1.29663 1.12246 1.13354 1.22008 1.00649 0.72341 0.72180 0.72107 1.93553 1.39731 1.77743 1.83983 1.93557 1.85565 1.70010 1.43179 1.59698 1.70789 1.34697 1.19618 1.22647 0.96465 0.84927 0.95476 1.23457 0.97238 0.99975 0.97488 1.21625 0.95205 0.96395 0.79171 1.23245 0.95377 0.96260 1.02000 1.23382 0.96086 0.97925 0.99797 1.21978 0.76636 1.01889 0.97676 1.92784 1.34862 1.95094 1.97073 1.23197 0.95256 0.97592 1.01498 1.24593 1.00661 0.94999 0.97298 1.20911 0.88288 1.01636 1.06063 1.84371 0.95134 1.08206 1.69759 0.88405 0.87467 0.88531 0.85308 0.76447 1.16722 1.19687 0.89953 0.88446 0.88501 0.89221 0.90246 0.88019 0.86229 0.90652 0.90736 0.87742 0.90838 0.90390 0.89043 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.40 7.89 36.00 0.28 0.69 16 2 C -0.19 0.12 6.26 -36.01 -0.23 -0.11 16 3 C -0.06 -0.03 5.32 -106.25 -0.57 -0.60 16 4 C -0.09 0.04 1.71 36.01 0.06 0.10 16 5 O -0.51 -0.83 6.53 -59.75 -0.39 -1.22 16 6 Si 0.65 -0.89 25.41 -169.99 -4.32 -5.21 16 7 C -0.67 -1.27 5.76 -41.20 -0.24 -1.51 16 8 S 2.74 9.10 5.39 -107.50 -0.58 8.52 16 9 O -0.96 -4.45 13.33 -57.17 -0.76 -5.21 16 10 O -0.93 -5.64 14.69 -67.16 -0.99 -6.63 16 11 N -1.01 -0.77 3.68 -114.03 -0.42 -1.19 16 12 C 0.13 -0.12 7.31 -9.64 -0.07 -0.19 16 13 C -0.14 0.45 8.01 -26.37 -0.21 0.24 16 14 C 0.17 -0.20 1.52 -138.45 -0.21 -0.41 16 15 C -0.13 0.10 7.51 -26.22 -0.20 -0.10 16 16 C -0.15 0.00 4.09 -89.67 -0.37 -0.37 16 17 C 0.07 -0.04 7.35 37.16 0.27 0.24 16 18 F -0.22 -0.74 17.36 2.25 0.04 -0.70 16 19 C -0.14 0.24 7.52 -26.21 -0.20 0.05 16 20 C -0.05 -0.07 6.50 -36.00 -0.23 -0.30 16 21 C -0.11 -0.05 8.65 36.01 0.31 0.26 16 22 S 0.16 -0.05 23.31 -107.50 -2.51 -2.56 16 23 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 24 H 0.11 -0.66 6.53 -51.93 -0.34 -1.00 16 25 H 0.10 -0.30 3.80 -51.93 -0.20 -0.49 16 26 H 0.13 -0.29 5.40 -51.93 -0.28 -0.57 16 27 H 0.38 0.40 8.27 45.56 0.38 0.78 16 28 H -0.24 -0.31 7.11 56.52 0.40 0.09 16 29 H -0.27 -0.38 6.68 56.52 0.38 0.00 16 30 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.10 -0.07 4.81 -51.93 -0.25 -0.32 16 32 H 0.10 -0.41 7.48 -51.93 -0.39 -0.80 16 33 H 0.09 -0.40 8.14 -51.93 -0.42 -0.83 16 34 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.10 -0.28 7.97 -51.93 -0.41 -0.69 16 36 H 0.12 0.30 6.67 -51.93 -0.35 -0.04 16 37 H 0.08 -0.19 7.95 -51.93 -0.41 -0.61 16 38 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 39 H 0.10 -0.41 8.10 -51.93 -0.42 -0.83 16 40 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 41 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 42 H 0.09 0.08 7.91 -51.93 -0.41 -0.33 16 43 H 0.11 0.07 7.00 -51.93 -0.36 -0.29 16 LS Contribution 347.76 15.07 5.24 5.24 Total: 0.00 -8.37 347.76 -11.90 -20.27 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: -5.63 Total: -9.31 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.58 Total: -2.01 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -0.42 Total: -1.19 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -2.14 Total: -13.06 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.04 Total: -0.70 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: -4.32 Total: -5.21 kcal Atomic # 16 Polarization: 9.04 SS G_CDS: -3.09 Total: 5.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -8.37 -11.90 -20.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.412 kcal (2) G-P(sol) polarization free energy of solvation -8.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds