Wall clock time and date at job start Tue Mar 9 2021 13:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33383 * 125.20925 * 2 1 4 4 C 1.50700 * 122.53833 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.47252 * 221.65580 * 4 3 2 6 6 Si 1.86300 * 109.47197 * 341.65545 * 4 3 2 7 7 C 1.38429 * 114.92679 * 179.79468 * 3 2 1 8 8 S 1.76193 * 122.54374 * 180.27789 * 7 3 2 9 9 O 1.42098 * 106.40457 * 165.76192 * 8 7 3 10 10 O 1.42099 * 106.39892 * 298.67737 * 8 7 3 11 11 N 1.65603 * 107.21996 * 52.21890 * 8 7 3 12 12 C 1.47215 * 136.17881 * 262.53144 * 11 8 7 13 13 C 1.53920 * 88.09021 * 153.63620 * 12 11 8 14 14 C 1.46284 * 136.18016 * 82.90306 * 11 8 7 15 15 C 1.53071 * 120.98203 * 80.58957 * 14 11 8 16 16 C 1.53919 * 86.84489 * 259.66771 * 15 14 11 17 17 C 1.52999 * 113.66119 * 220.53168 * 16 15 14 18 18 F 1.39907 * 109.47181 * 277.70397 * 17 16 15 19 19 C 1.53072 * 120.98418 * 332.55469 * 14 11 8 20 20 C 1.33392 * 114.91412 * 0.42500 * 7 3 2 21 21 C 1.50702 * 125.19758 * 179.85726 * 20 7 3 22 22 S 1.75880 * 109.59501 * 359.60281 * 20 7 3 23 23 H 1.08993 * 109.47443 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46738 * 300.00364 * 1 2 3 25 25 H 1.09006 * 109.46698 * 59.99500 * 1 2 3 26 26 H 1.09007 * 109.47508 * 101.65407 * 4 3 2 27 27 H 0.96697 * 114.00030 * 66.37814 * 5 4 3 28 28 H 1.48494 * 110.00286 * 179.97438 * 6 4 3 29 29 H 1.48498 * 109.99750 * 301.31978 * 6 4 3 30 30 H 1.09003 * 113.43608 * 268.42098 * 12 11 8 31 31 H 1.09002 * 113.43566 * 38.74533 * 12 11 8 32 32 H 1.09000 * 114.49631 * 272.06203 * 13 12 11 33 33 H 1.08998 * 114.16786 * 139.09490 * 13 12 11 34 34 H 1.09001 * 113.65526 * 14.15408 * 15 14 11 35 35 H 1.09000 * 113.65269 * 145.18474 * 15 14 11 36 36 H 1.09003 * 113.58704 * 89.72316 * 16 15 14 37 37 H 1.08991 * 109.47511 * 37.70168 * 17 16 15 38 38 H 1.09000 * 109.46941 * 157.70646 * 17 16 15 39 39 H 1.08998 * 113.65232 * 214.81634 * 19 14 11 40 40 H 1.09001 * 113.64930 * 345.75319 * 19 14 11 41 41 H 1.09006 * 109.46614 * 179.72539 * 21 20 7 42 42 H 1.08995 * 109.47571 * 299.72200 * 21 20 7 43 43 H 1.09003 * 109.47002 * 59.73332 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 1.7053 2.4846 0.0006 5 8 2.4562 3.3069 -0.8949 6 14 -0.0731 2.4281 -0.5516 7 6 3.6381 0.8427 0.0045 8 16 4.8357 2.1349 0.0125 9 8 6.0763 1.5302 0.3509 10 8 4.6332 2.8771 -1.1822 11 7 4.4535 3.1499 1.2640 12 6 3.7286 4.4221 1.4164 13 6 3.4199 4.0130 2.8678 14 6 4.6922 3.1828 2.7069 15 6 6.0273 3.6718 3.2738 16 6 6.4026 2.1884 3.4409 17 6 7.1398 1.8849 4.7467 18 9 8.4979 2.1854 4.5962 19 6 4.8937 1.8903 3.5019 20 6 3.9750 -0.4479 -0.0008 21 6 5.3860 -0.9773 -0.0007 22 16 2.5208 -1.4372 -0.0007 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5140 -0.8900 26 1 1.7602 2.8993 1.0072 27 1 2.3727 3.0542 -1.8246 28 1 -0.6476 3.7974 -0.5548 29 1 -0.1645 1.8353 -1.9100 30 1 4.3715 5.2991 1.3406 31 1 2.8419 4.4939 0.7865 32 1 2.5116 3.4224 2.9874 33 1 3.5039 4.8266 3.5882 34 1 6.6442 4.1996 2.5465 35 1 5.9314 4.2076 4.2181 36 1 6.8964 1.7624 2.5675 37 1 6.7206 2.4907 5.5500 38 1 7.0263 0.8287 4.9910 39 1 4.4810 1.9282 4.5100 40 1 4.6016 0.9922 2.9578 41 1 5.3651 -2.0672 -0.0008 42 1 5.9069 -0.6238 -0.8905 43 1 5.9065 -0.6240 0.8895 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17321338_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:00 Heat of formation + Delta-G solvation = -38.678139 kcal Electronic energy + Delta-G solvation = -31284.476503 eV Core-core repulsion = 27081.473809 eV Total energy + Delta-G solvation = -4203.002694 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.085 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.51600 -41.67902 -40.32087 -38.54806 -37.13713 -36.93815 -36.71396 -34.67682 -30.91262 -29.72713 -28.95147 -28.06357 -26.88981 -25.88219 -24.35669 -23.29960 -21.92328 -21.25715 -20.51464 -19.35452 -18.66330 -17.97674 -17.78097 -17.26211 -17.09969 -16.87943 -16.71717 -16.61291 -16.34755 -16.16925 -15.67003 -15.33191 -15.09384 -14.84728 -14.69825 -14.47184 -14.21761 -13.98149 -13.92378 -13.60163 -13.47853 -13.42508 -13.36555 -13.16468 -13.03562 -12.98296 -12.93028 -12.69096 -12.58512 -12.06795 -11.95447 -11.73725 -11.69487 -11.58569 -11.44311 -11.38956 -10.77430 -10.72185 -10.03097 -9.92166 -9.49158 -4.72930 -0.76710 -0.45536 0.39105 0.68334 0.85658 1.28441 1.57194 1.92293 1.97051 2.70937 3.10259 3.33974 3.36435 3.43406 3.50339 3.54898 3.58139 3.71403 3.81857 3.94337 4.07021 4.12528 4.20583 4.25617 4.28613 4.35846 4.42675 4.45973 4.51221 4.54513 4.64812 4.69392 4.78619 4.79709 4.81723 4.85301 4.90328 4.98425 4.99349 5.06016 5.13408 5.14192 5.21287 5.33646 5.51288 5.75953 6.42741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.190 4.190 3 C -0.079 4.079 4 C -0.102 4.102 5 O -0.528 6.528 6 Si 0.748 3.252 7 C -0.679 4.679 8 S 2.736 3.264 9 O -0.986 6.986 10 O -0.972 6.972 11 N -1.016 6.016 12 C 0.117 3.883 13 C -0.119 4.119 14 C 0.159 3.841 15 C -0.131 4.131 16 C -0.163 4.163 17 C 0.067 3.933 18 F -0.243 7.243 19 C -0.126 4.126 20 C -0.075 4.075 21 C -0.113 4.113 22 S 0.186 5.814 23 H 0.117 0.883 24 H 0.142 0.858 25 H 0.093 0.907 26 H 0.149 0.851 27 H 0.382 0.618 28 H -0.279 1.279 29 H -0.313 1.313 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 -2.640 7.455 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.308 4.308 3 C -0.089 4.089 4 C -0.213 4.213 5 O -0.337 6.337 6 Si 0.656 3.344 7 C -0.779 4.779 8 S 2.830 3.170 9 O -0.977 6.977 10 O -0.963 6.963 11 N -0.855 5.855 12 C -0.007 4.007 13 C -0.159 4.159 14 C 0.070 3.930 15 C -0.170 4.170 16 C -0.181 4.181 17 C 0.012 3.988 18 F -0.224 7.224 19 C -0.164 4.164 20 C -0.196 4.196 21 C -0.171 4.171 22 S 0.453 5.547 23 H 0.136 0.864 24 H 0.159 0.841 25 H 0.110 0.890 26 H 0.166 0.834 27 H 0.232 0.768 28 H -0.207 1.207 29 H -0.243 1.243 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.155 0.845 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.897 -3.753 6.608 11.701 hybrid contribution 1.404 1.032 -1.711 2.442 sum -7.493 -2.721 4.897 9.355 Atomic orbital electron populations 1.20575 0.85749 1.05804 1.05543 1.24597 1.01222 0.94937 1.10018 1.18620 0.90160 0.97300 1.02848 1.25385 1.08372 0.87385 1.00127 1.86656 1.69547 1.56240 1.21240 0.93480 0.76852 0.79051 0.85065 1.29445 1.12565 1.12917 1.22993 1.00190 0.72355 0.72438 0.72035 1.93520 1.41586 1.78286 1.84265 1.93505 1.86185 1.71124 1.45488 1.59596 1.70958 1.34929 1.20028 1.22856 0.96190 0.84192 0.97441 1.23472 0.96567 1.00025 0.95808 1.21841 0.96038 0.97194 0.77899 1.23341 0.95339 0.95692 1.02669 1.23309 0.97391 0.98611 0.98832 1.22266 0.75057 1.03320 0.98122 1.92729 1.37141 1.95330 1.97229 1.23230 0.93465 0.96814 1.02891 1.24731 1.01607 0.95394 0.97910 1.20913 0.88213 1.02833 1.05179 1.84230 0.93846 1.07722 1.68881 0.86450 0.84080 0.88999 0.83376 0.76764 1.20709 1.24301 0.90284 0.88728 0.86542 0.86847 0.92640 0.85340 0.89804 0.87725 0.89557 0.84540 0.91688 0.88437 0.90266 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.14 7.89 71.23 0.56 1.71 16 2 C -0.19 0.43 6.26 24.59 0.15 0.59 16 3 C -0.08 -0.09 5.32 -20.92 -0.11 -0.20 16 4 C -0.10 0.10 1.71 71.24 0.12 0.23 16 5 O -0.53 -2.54 6.53 -125.53 -0.82 -3.36 16 6 Si 0.75 -2.44 25.41 68.60 1.74 -0.69 16 7 C -0.68 -3.43 5.76 21.22 0.12 -3.31 16 8 S 2.74 25.31 5.39 -56.49 -0.30 25.00 16 9 O -0.99 -12.68 13.33 -128.00 -1.71 -14.38 16 10 O -0.97 -15.00 14.69 -118.45 -1.74 -16.74 16 11 N -1.02 -2.69 3.68 -514.67 -1.90 -4.59 16 12 C 0.12 -0.19 7.31 82.37 0.60 0.41 16 13 C -0.12 1.01 8.01 30.83 0.25 1.26 16 14 C 0.16 -0.44 1.52 -0.57 0.00 -0.44 16 15 C -0.13 0.18 7.51 30.93 0.23 0.41 16 16 C -0.16 -0.14 4.09 -10.18 -0.04 -0.18 16 17 C 0.07 -0.08 7.35 71.98 0.53 0.45 16 18 F -0.24 -1.94 17.36 44.97 0.78 -1.16 16 19 C -0.13 0.56 7.52 30.93 0.23 0.79 16 20 C -0.08 -0.27 6.50 24.59 0.16 -0.11 16 21 C -0.11 -0.34 8.65 71.24 0.62 0.28 16 22 S 0.19 -0.24 23.31 -56.49 -1.32 -1.56 16 23 H 0.12 -1.48 8.14 -2.39 -0.02 -1.50 16 24 H 0.14 -2.24 6.53 -2.39 -0.02 -2.26 16 25 H 0.09 -0.70 3.80 -2.38 -0.01 -0.71 16 26 H 0.15 -0.85 5.40 -2.38 -0.01 -0.87 16 27 H 0.38 1.76 8.27 -74.06 -0.61 1.15 16 28 H -0.28 -0.75 7.11 99.48 0.71 -0.04 16 29 H -0.31 -1.08 6.68 99.48 0.66 -0.41 16 30 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.09 -0.11 4.81 -2.39 -0.01 -0.12 16 32 H 0.12 -1.40 7.48 -2.39 -0.02 -1.42 16 33 H 0.11 -1.41 8.14 -2.39 -0.02 -1.43 16 34 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.13 -0.91 7.97 -2.39 -0.02 -0.93 16 36 H 0.08 0.69 6.67 -2.39 -0.02 0.68 16 37 H 0.10 -0.74 7.95 -2.39 -0.02 -0.76 16 38 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.14 -1.49 8.10 -2.39 -0.02 -1.51 16 40 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.10 -0.19 8.14 -2.38 -0.02 -0.21 16 42 H 0.08 0.39 7.91 -2.39 -0.02 0.37 16 43 H 0.10 0.42 7.00 -2.39 -0.02 0.40 16 Total: 0.00 -24.26 347.76 -1.39 -25.64 By element: Atomic # 1 Polarization: -10.49 SS G_CDS: 0.45 Total: -10.04 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 3.42 Total: 1.88 kcal Atomic # 7 Polarization: -2.69 SS G_CDS: -1.90 Total: -4.59 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -4.27 Total: -34.49 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.78 Total: -1.16 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 1.74 Total: -0.69 kcal Atomic # 16 Polarization: 25.07 SS G_CDS: -1.62 Total: 23.44 kcal Total: -24.26 -1.39 -25.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17321338_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.034 kcal (2) G-P(sol) polarization free energy of solvation -24.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds