Wall clock time and date at job start Tue Mar 9 2021 13:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.19982 * 2 1 4 4 C 1.50700 * 122.54310 * 359.97205 * 3 2 1 5 5 O 1.42904 * 109.47107 * 304.63622 * 4 3 2 6 6 Si 1.86301 * 109.47081 * 64.63926 * 4 3 2 7 7 C 1.38425 * 114.91942 * 180.20802 * 3 2 1 8 8 S 1.76208 * 122.54314 * 179.76142 * 7 3 2 9 9 O 1.42099 * 106.40580 * 160.96954 * 8 7 3 10 10 O 1.42100 * 106.40021 * 28.04763 * 8 7 3 11 11 N 1.65604 * 107.21603 * 274.51327 * 8 7 3 12 12 C 1.46494 * 120.00212 * 63.16476 * 11 8 7 13 13 C 1.53001 * 109.46948 * 143.96645 * 12 11 8 14 14 C 1.52999 * 109.47067 * 59.99831 * 13 12 11 15 15 C 1.53000 * 109.47145 * 60.00160 * 14 13 12 16 16 C 1.53001 * 109.47007 * 299.99876 * 15 14 13 17 17 C 1.52999 * 109.47067 * 60.00076 * 16 15 14 18 18 C 1.52991 * 109.47067 * 60.00123 * 17 16 15 19 19 C 1.53001 * 109.47411 * 299.99692 * 18 17 16 20 20 O 1.42898 * 109.47256 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46753 * 60.00116 * 19 18 17 22 22 C 1.53000 * 109.46987 * 300.00396 * 19 18 17 23 23 C 1.33390 * 114.92212 * 359.49688 * 7 3 2 24 24 C 1.50696 * 125.20493 * 180.25401 * 23 7 3 25 25 S 1.75880 * 109.59104 * 0.26538 * 23 7 3 26 26 H 1.09004 * 109.47038 * 185.94466 * 1 2 3 27 27 H 1.08996 * 109.47346 * 305.94746 * 1 2 3 28 28 H 1.09005 * 109.47261 * 65.94733 * 1 2 3 29 29 H 1.09005 * 109.47150 * 184.63693 * 4 3 2 30 30 H 0.96702 * 113.99619 * 67.74824 * 5 4 3 31 31 H 1.48501 * 109.99897 * 63.69702 * 6 4 3 32 32 H 1.48499 * 109.99969 * 185.01466 * 6 4 3 33 33 H 0.97001 * 119.99145 * 243.16615 * 11 8 7 34 34 H 1.09000 * 109.47042 * 23.96290 * 12 11 8 35 35 H 1.08996 * 109.47069 * 299.99633 * 13 12 11 36 36 H 1.08993 * 109.47438 * 300.00103 * 14 13 12 37 37 H 1.09001 * 109.47040 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.47201 * 179.97438 * 15 14 13 39 39 H 1.09006 * 109.46953 * 180.02562 * 16 15 14 40 40 H 1.09002 * 109.46919 * 299.99499 * 16 15 14 41 41 H 1.09002 * 109.46754 * 179.97438 * 17 16 15 42 42 H 1.09007 * 109.47607 * 59.99922 * 18 17 16 43 43 H 1.09008 * 109.47057 * 179.97438 * 18 17 16 44 44 H 0.96699 * 114.00456 * 300.00544 * 20 19 18 45 45 H 1.09001 * 109.47040 * 179.97438 * 21 19 18 46 46 H 1.09006 * 109.47421 * 60.00275 * 21 19 18 47 47 H 1.09000 * 109.47005 * 299.99973 * 22 19 18 48 48 H 1.09001 * 109.46714 * 179.97438 * 22 19 18 49 49 H 1.09000 * 109.47874 * 89.99566 * 24 23 7 50 50 H 1.09006 * 109.46618 * 209.99374 * 24 23 7 51 51 H 1.09005 * 109.47055 * 329.99143 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 -0.0006 5 8 0.8164 2.6352 -1.1096 6 14 0.7729 2.7749 1.5861 7 6 3.6379 0.8429 -0.0046 8 16 4.8356 2.1353 -0.0116 9 8 6.0552 1.5547 0.4295 10 8 4.2283 3.2487 0.6294 11 7 5.0716 2.5763 -1.5903 12 6 3.9664 3.1461 -2.3648 13 6 4.5072 4.2197 -3.3113 14 6 5.5275 3.5930 -4.2636 15 6 4.8527 2.4877 -5.0785 16 6 4.3119 1.4141 -4.1320 17 6 3.2916 2.0409 -3.1797 18 6 2.1374 2.6360 -3.9886 19 6 2.6781 3.7096 -4.9350 20 8 1.6001 4.2650 -5.6910 21 6 3.6984 3.0828 -5.8874 22 6 3.3529 4.8148 -4.1201 23 6 3.9751 -0.4476 0.0024 24 6 5.3860 -0.9769 0.0049 25 16 2.5210 -1.4371 0.0078 26 1 -0.3633 -1.0222 0.1064 27 1 -0.3634 0.6033 0.8319 28 1 -0.3634 0.4189 -0.9385 29 1 2.5155 3.2089 -0.0836 30 1 0.0099 2.1060 -1.0418 31 1 1.7039 2.7094 2.7413 32 1 0.1043 4.1003 1.5472 33 1 5.9418 2.4572 -2.0021 34 1 3.2395 3.5926 -1.6862 35 1 4.9879 5.0071 -2.7307 36 1 6.3498 3.1690 -3.6874 37 1 5.9125 4.3577 -4.9382 38 1 5.5794 2.0415 -5.7573 39 1 3.8315 0.6265 -4.7127 40 1 5.1343 0.9901 -3.5558 41 1 2.9060 1.2759 -2.5057 42 1 1.6566 1.8486 -4.5691 43 1 1.4102 3.0821 -3.3100 44 1 1.1260 3.6194 -6.2328 45 1 4.0833 3.8476 -6.5620 46 1 3.2177 2.2954 -6.4680 47 1 2.6260 5.2613 -3.4416 48 1 3.7385 5.5795 -4.7945 49 1 5.7266 -1.0989 1.0331 50 1 5.4134 -1.9406 -0.5037 51 1 6.0387 -0.2740 -0.5131 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_17849790_15065288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:24 Heat of formation + Delta-G solvation = -124.293520 kcal Electronic energy + Delta-G solvation = -38612.004389 eV Core-core repulsion = 34116.759539 eV Total energy + Delta-G solvation = -4495.244850 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.126 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.71509 -40.40321 -38.56486 -37.78600 -37.23144 -36.96277 -35.48368 -34.16173 -33.72279 -32.94544 -31.08703 -30.68569 -28.07980 -26.96396 -26.46469 -25.93257 -23.25582 -22.73963 -22.58969 -22.28126 -20.82443 -20.03994 -19.35491 -18.64160 -18.45058 -18.17939 -17.89411 -17.09508 -16.93037 -16.15672 -15.94692 -15.80385 -15.73928 -15.46506 -15.39089 -15.28906 -15.22539 -14.66469 -14.54376 -14.50574 -14.37671 -14.24793 -14.05446 -13.73963 -13.60817 -13.59126 -13.48979 -13.40014 -13.35431 -13.20563 -13.00195 -12.81855 -12.76413 -12.56433 -12.42639 -12.16859 -12.09461 -11.91547 -11.83038 -11.66467 -11.59689 -11.34416 -11.28759 -11.00932 -10.66815 -10.38342 -10.31716 -9.99361 -9.41249 -4.98304 -0.77244 -0.43812 0.37039 0.69183 0.81197 1.38933 1.75124 1.98057 2.14352 2.62420 3.10939 3.18473 3.35836 3.42090 3.43869 3.47559 3.67609 3.78483 3.84948 3.92834 3.99730 4.01846 4.05664 4.10211 4.15331 4.17937 4.21604 4.24674 4.30826 4.30907 4.33578 4.44908 4.47917 4.57026 4.60784 4.66806 4.71547 4.74087 4.80910 4.92098 4.93441 4.96837 5.01875 5.02866 5.04166 5.07480 5.11511 5.20367 5.23536 5.26895 5.36824 5.46790 5.54426 5.85966 6.44612 6.76992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.188 4.188 3 C -0.061 4.061 4 C -0.084 4.084 5 O -0.528 6.528 6 Si 0.669 3.331 7 C -0.684 4.684 8 S 2.702 3.298 9 O -0.952 6.952 10 O -0.954 6.954 11 N -1.108 6.108 12 C 0.156 3.844 13 C -0.086 4.086 14 C -0.112 4.112 15 C -0.084 4.084 16 C -0.111 4.111 17 C -0.092 4.092 18 C -0.135 4.135 19 C 0.135 3.865 20 O -0.560 6.560 21 C -0.137 4.137 22 C -0.097 4.097 23 C -0.046 4.046 24 C -0.115 4.115 25 S 0.162 5.838 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.369 0.631 31 H -0.248 1.248 32 H -0.242 1.242 33 H 0.418 0.582 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.375 0.625 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.081 0.919 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 -5.437 -3.081 6.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.306 4.306 3 C -0.071 4.071 4 C -0.196 4.196 5 O -0.335 6.335 6 Si 0.568 3.432 7 C -0.784 4.784 8 S 2.791 3.209 9 O -0.943 6.943 10 O -0.943 6.943 11 N -0.868 5.868 12 C 0.050 3.950 13 C -0.106 4.106 14 C -0.150 4.150 15 C -0.103 4.103 16 C -0.148 4.148 17 C -0.113 4.113 18 C -0.173 4.173 19 C 0.094 3.906 20 O -0.365 6.365 21 C -0.175 4.175 22 C -0.135 4.135 23 C -0.167 4.167 24 C -0.173 4.173 25 S 0.428 5.572 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.165 0.835 30 H 0.218 0.782 31 H -0.172 1.172 32 H -0.166 1.166 33 H 0.255 0.745 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.222 0.778 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.117 0.883 50 H 0.100 0.900 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.283 -5.189 -1.430 5.847 hybrid contribution 0.556 0.302 -1.070 1.243 sum -1.727 -4.887 -2.500 5.755 Atomic orbital electron populations 1.20514 0.87261 1.04021 1.03062 1.24226 1.00158 0.94902 1.11289 1.18480 0.90403 0.96809 1.01428 1.25518 0.98449 0.94271 1.01382 1.86581 1.33705 1.70205 1.43026 0.95846 0.85324 0.85937 0.76074 1.29381 1.11780 1.13295 1.23905 1.01615 0.73169 0.73595 0.72564 1.93597 1.42901 1.78410 1.79346 1.93491 1.77590 1.50258 1.72999 1.55610 1.20379 1.78676 1.32171 1.21011 0.87075 0.93467 0.93468 1.21285 0.96238 0.97100 0.95962 1.21600 0.97312 0.98178 0.97913 1.21038 0.96840 0.95692 0.96703 1.21569 0.98673 0.97381 0.97191 1.21424 0.95228 0.97531 0.97071 1.22181 0.98094 0.98162 0.98861 1.21104 0.86185 0.92884 0.90408 1.86559 1.47542 1.39665 1.62752 1.22206 0.96846 1.00429 0.98010 1.21382 0.96740 0.97016 0.98386 1.24546 1.00783 0.94942 0.96427 1.20968 0.88417 1.02567 1.05370 1.84396 0.95021 1.08335 1.69439 0.90046 0.89429 0.89536 0.83485 0.78173 1.17179 1.16611 0.74490 0.88313 0.89552 0.91641 0.91080 0.90749 0.91749 0.91733 0.89913 0.91762 0.88963 0.77768 0.91164 0.91735 0.90635 0.90658 0.88296 0.90039 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.41 8.62 36.00 0.31 0.72 16 2 C -0.19 0.25 6.09 -36.00 -0.22 0.03 16 3 C -0.06 -0.03 3.29 -106.25 -0.35 -0.38 16 4 C -0.08 -0.09 1.88 36.01 0.07 -0.02 16 5 O -0.53 0.45 11.18 -35.23 -0.39 0.05 16 6 Si 0.67 0.74 29.60 -169.99 -5.03 -4.29 16 7 C -0.68 -0.85 5.02 -41.21 -0.21 -1.05 16 8 S 2.70 6.35 5.34 -107.50 -0.57 5.78 16 9 O -0.95 -3.73 14.78 -57.17 -0.84 -4.57 16 10 O -0.95 -4.85 14.41 -57.17 -0.82 -5.67 16 11 N -1.11 0.38 4.75 -4.89 -0.02 0.36 16 12 C 0.16 -0.02 2.35 -67.93 -0.16 -0.18 16 13 C -0.09 0.04 2.91 -90.62 -0.26 -0.22 16 14 C -0.11 0.17 5.01 -26.73 -0.13 0.03 16 15 C -0.08 0.13 3.19 -90.62 -0.29 -0.16 16 16 C -0.11 0.17 5.03 -26.73 -0.13 0.04 16 17 C -0.09 0.09 2.91 -90.62 -0.26 -0.18 16 18 C -0.13 0.09 4.81 -26.73 -0.13 -0.03 16 19 C 0.13 -0.02 1.15 -90.62 -0.10 -0.12 16 20 O -0.56 -0.54 12.98 -35.23 -0.46 -0.99 16 21 C -0.14 0.13 4.81 -26.73 -0.13 0.00 16 22 C -0.10 -0.05 4.84 -26.73 -0.13 -0.18 16 23 C -0.05 -0.01 6.50 -36.00 -0.23 -0.24 16 24 C -0.11 0.09 9.13 36.00 0.33 0.42 16 25 S 0.16 -0.19 23.31 -107.50 -2.51 -2.69 16 26 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16 27 H 0.09 -0.49 5.21 -51.93 -0.27 -0.76 16 28 H 0.09 -0.53 6.38 -51.93 -0.33 -0.86 16 29 H 0.15 0.41 2.69 -51.93 -0.14 0.27 16 30 H 0.37 -1.57 5.48 45.56 0.25 -1.32 16 31 H -0.25 -1.18 7.11 56.52 0.40 -0.77 16 32 H -0.24 -0.82 7.11 56.52 0.40 -0.42 16 33 H 0.42 -0.89 6.79 -34.47 -0.23 -1.12 16 34 H 0.10 0.11 5.09 -51.93 -0.26 -0.16 16 35 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 16 36 H 0.07 -0.16 6.51 -51.93 -0.34 -0.49 16 37 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 38 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 39 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 40 H 0.06 -0.13 7.42 -51.93 -0.39 -0.51 16 41 H 0.08 -0.04 6.10 -51.93 -0.32 -0.36 16 42 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 43 H 0.09 0.03 6.44 -51.92 -0.33 -0.30 16 44 H 0.38 -0.91 9.04 45.56 0.41 -0.50 16 45 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 46 H 0.06 -0.09 8.14 -51.93 -0.42 -0.52 16 47 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 48 H 0.07 0.06 8.14 -51.93 -0.42 -0.37 16 49 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 50 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 51 H 0.10 -0.06 6.05 -51.93 -0.31 -0.37 16 LS Contribution 379.01 15.07 5.71 5.71 Total: 0.00 -8.22 379.01 -13.52 -21.73 By element: Atomic # 1 Polarization: -7.34 SS G_CDS: -6.54 Total: -13.88 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.04 Total: -1.53 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: -0.02 Total: 0.36 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -2.52 Total: -11.18 kcal Atomic # 14 Polarization: 0.74 SS G_CDS: -5.03 Total: -4.29 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -3.08 Total: 3.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -8.22 -13.52 -21.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_15065288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.559 kcal (2) G-P(sol) polarization free energy of solvation -8.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds