Wall clock time and date at job start Tue Mar 9 2021 13:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.19982 * 2 1 4 4 C 1.50700 * 122.54310 * 359.97205 * 3 2 1 5 5 O 1.42904 * 109.47107 * 304.63622 * 4 3 2 6 6 Si 1.86301 * 109.47081 * 64.63926 * 4 3 2 7 7 C 1.38425 * 114.91942 * 180.20802 * 3 2 1 8 8 S 1.76208 * 122.54314 * 179.76142 * 7 3 2 9 9 O 1.42099 * 106.40580 * 160.96954 * 8 7 3 10 10 O 1.42100 * 106.40021 * 28.04763 * 8 7 3 11 11 N 1.65604 * 107.21603 * 274.51327 * 8 7 3 12 12 C 1.46494 * 120.00212 * 63.16476 * 11 8 7 13 13 C 1.53001 * 109.46948 * 143.96645 * 12 11 8 14 14 C 1.52999 * 109.47067 * 59.99831 * 13 12 11 15 15 C 1.53000 * 109.47145 * 60.00160 * 14 13 12 16 16 C 1.53001 * 109.47007 * 299.99876 * 15 14 13 17 17 C 1.52999 * 109.47067 * 60.00076 * 16 15 14 18 18 C 1.52991 * 109.47067 * 60.00123 * 17 16 15 19 19 C 1.53001 * 109.47411 * 299.99692 * 18 17 16 20 20 O 1.42898 * 109.47256 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46753 * 60.00116 * 19 18 17 22 22 C 1.53000 * 109.46987 * 300.00396 * 19 18 17 23 23 C 1.33390 * 114.92212 * 359.49688 * 7 3 2 24 24 C 1.50696 * 125.20493 * 180.25401 * 23 7 3 25 25 S 1.75880 * 109.59104 * 0.26538 * 23 7 3 26 26 H 1.09004 * 109.47038 * 185.94466 * 1 2 3 27 27 H 1.08996 * 109.47346 * 305.94746 * 1 2 3 28 28 H 1.09005 * 109.47261 * 65.94733 * 1 2 3 29 29 H 1.09005 * 109.47150 * 184.63693 * 4 3 2 30 30 H 0.96702 * 113.99619 * 67.74824 * 5 4 3 31 31 H 1.48501 * 109.99897 * 63.69702 * 6 4 3 32 32 H 1.48499 * 109.99969 * 185.01466 * 6 4 3 33 33 H 0.97001 * 119.99145 * 243.16615 * 11 8 7 34 34 H 1.09000 * 109.47042 * 23.96290 * 12 11 8 35 35 H 1.08996 * 109.47069 * 299.99633 * 13 12 11 36 36 H 1.08993 * 109.47438 * 300.00103 * 14 13 12 37 37 H 1.09001 * 109.47040 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.47201 * 179.97438 * 15 14 13 39 39 H 1.09006 * 109.46953 * 180.02562 * 16 15 14 40 40 H 1.09002 * 109.46919 * 299.99499 * 16 15 14 41 41 H 1.09002 * 109.46754 * 179.97438 * 17 16 15 42 42 H 1.09007 * 109.47607 * 59.99922 * 18 17 16 43 43 H 1.09008 * 109.47057 * 179.97438 * 18 17 16 44 44 H 0.96699 * 114.00456 * 300.00544 * 20 19 18 45 45 H 1.09001 * 109.47040 * 179.97438 * 21 19 18 46 46 H 1.09006 * 109.47421 * 60.00275 * 21 19 18 47 47 H 1.09000 * 109.47005 * 299.99973 * 22 19 18 48 48 H 1.09001 * 109.46714 * 179.97438 * 22 19 18 49 49 H 1.09000 * 109.47874 * 89.99566 * 24 23 7 50 50 H 1.09006 * 109.46618 * 209.99374 * 24 23 7 51 51 H 1.09005 * 109.47055 * 329.99143 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 -0.0006 5 8 0.8164 2.6352 -1.1096 6 14 0.7729 2.7749 1.5861 7 6 3.6379 0.8429 -0.0046 8 16 4.8356 2.1353 -0.0116 9 8 6.0552 1.5547 0.4295 10 8 4.2283 3.2487 0.6294 11 7 5.0716 2.5763 -1.5903 12 6 3.9664 3.1461 -2.3648 13 6 4.5072 4.2197 -3.3113 14 6 5.5275 3.5930 -4.2636 15 6 4.8527 2.4877 -5.0785 16 6 4.3119 1.4141 -4.1320 17 6 3.2916 2.0409 -3.1797 18 6 2.1374 2.6360 -3.9886 19 6 2.6781 3.7096 -4.9350 20 8 1.6001 4.2650 -5.6910 21 6 3.6984 3.0828 -5.8874 22 6 3.3529 4.8148 -4.1201 23 6 3.9751 -0.4476 0.0024 24 6 5.3860 -0.9769 0.0049 25 16 2.5210 -1.4371 0.0078 26 1 -0.3633 -1.0222 0.1064 27 1 -0.3634 0.6033 0.8319 28 1 -0.3634 0.4189 -0.9385 29 1 2.5155 3.2089 -0.0836 30 1 0.0099 2.1060 -1.0418 31 1 1.7039 2.7094 2.7413 32 1 0.1043 4.1003 1.5472 33 1 5.9418 2.4572 -2.0021 34 1 3.2395 3.5926 -1.6862 35 1 4.9879 5.0071 -2.7307 36 1 6.3498 3.1690 -3.6874 37 1 5.9125 4.3577 -4.9382 38 1 5.5794 2.0415 -5.7573 39 1 3.8315 0.6265 -4.7127 40 1 5.1343 0.9901 -3.5558 41 1 2.9060 1.2759 -2.5057 42 1 1.6566 1.8486 -4.5691 43 1 1.4102 3.0821 -3.3100 44 1 1.1260 3.6194 -6.2328 45 1 4.0833 3.8476 -6.5620 46 1 3.2177 2.2954 -6.4680 47 1 2.6260 5.2613 -3.4416 48 1 3.7385 5.5795 -4.7945 49 1 5.7266 -1.0989 1.0331 50 1 5.4134 -1.9406 -0.5037 51 1 6.0387 -0.2740 -0.5131 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_17849790_15065288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:22 Heat of formation + Delta-G solvation = -125.422340 kcal Electronic energy + Delta-G solvation = -38612.053339 eV Core-core repulsion = 34116.759539 eV Total energy + Delta-G solvation = -4495.293800 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.126 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.66855 -40.36402 -38.77242 -37.79347 -37.24939 -37.17631 -35.47445 -34.03306 -33.67306 -32.90316 -30.91053 -30.65723 -28.06950 -26.90004 -26.42681 -25.81969 -23.24488 -22.69441 -22.51382 -22.26601 -20.83130 -20.09813 -19.38974 -18.62179 -18.47769 -18.17929 -17.88924 -17.11695 -16.96852 -16.21434 -15.95294 -15.77709 -15.73118 -15.41175 -15.34238 -15.24242 -15.18366 -14.58655 -14.49348 -14.47152 -14.31381 -14.26917 -14.03260 -13.77914 -13.56186 -13.53934 -13.47994 -13.41572 -13.32254 -13.30635 -12.91476 -12.79881 -12.73684 -12.56637 -12.43254 -12.34355 -12.11055 -11.86201 -11.80207 -11.68943 -11.57050 -11.30042 -11.20835 -10.97849 -10.67313 -10.33667 -10.28076 -9.91157 -9.34441 -5.14999 -0.88594 -0.40147 0.45250 0.74705 0.79599 1.29559 1.56875 1.89017 1.99861 2.49435 3.06509 3.18826 3.41885 3.47322 3.49618 3.54348 3.75833 3.84724 3.89027 4.04717 4.06230 4.08467 4.12311 4.19490 4.21449 4.24466 4.27869 4.30535 4.36300 4.43160 4.54679 4.62700 4.65968 4.72898 4.73902 4.75421 4.80849 4.87465 4.95483 4.99513 5.05465 5.06504 5.07050 5.09894 5.10489 5.11940 5.18286 5.27615 5.34586 5.36775 5.44083 5.53244 5.60433 5.93622 6.68639 6.92327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.177 4.177 3 C -0.083 4.083 4 C -0.081 4.081 5 O -0.529 6.529 6 Si 0.743 3.257 7 C -0.691 4.691 8 S 2.705 3.295 9 O -0.974 6.974 10 O -0.990 6.990 11 N -1.097 6.097 12 C 0.156 3.844 13 C -0.085 4.085 14 C -0.113 4.113 15 C -0.082 4.082 16 C -0.110 4.110 17 C -0.087 4.087 18 C -0.130 4.130 19 C 0.134 3.866 20 O -0.579 6.579 21 C -0.133 4.133 22 C -0.100 4.100 23 C -0.057 4.057 24 C -0.120 4.120 25 S 0.194 5.806 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.386 0.614 31 H -0.304 1.304 32 H -0.277 1.277 33 H 0.427 0.573 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.389 0.611 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.102 0.898 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -7.656 -4.471 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.295 4.295 3 C -0.093 4.093 4 C -0.194 4.194 5 O -0.338 6.338 6 Si 0.649 3.351 7 C -0.794 4.794 8 S 2.796 3.204 9 O -0.965 6.965 10 O -0.979 6.979 11 N -0.859 5.859 12 C 0.050 3.950 13 C -0.105 4.105 14 C -0.150 4.150 15 C -0.100 4.100 16 C -0.147 4.147 17 C -0.107 4.107 18 C -0.168 4.168 19 C 0.094 3.906 20 O -0.387 6.387 21 C -0.171 4.171 22 C -0.138 4.138 23 C -0.179 4.179 24 C -0.179 4.179 25 S 0.460 5.540 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.146 0.854 30 H 0.237 0.763 31 H -0.232 1.232 32 H -0.204 1.204 33 H 0.266 0.734 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.238 0.762 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.113 0.887 50 H 0.121 0.879 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.170 -7.412 -2.846 8.549 hybrid contribution 0.789 1.009 -0.610 1.419 sum -2.381 -6.402 -3.456 7.655 Atomic orbital electron populations 1.20789 0.84920 1.05431 1.04641 1.24653 1.01745 0.94297 1.08778 1.18409 0.90356 0.96875 1.03649 1.25315 0.98154 0.94549 1.01362 1.86567 1.34374 1.70779 1.42113 0.95318 0.82591 0.83757 0.73482 1.29133 1.11744 1.13093 1.25414 1.01158 0.72873 0.73416 0.72921 1.93562 1.44083 1.78670 1.80135 1.93456 1.78131 1.52080 1.74275 1.55338 1.20898 1.78553 1.31150 1.21008 0.86835 0.93946 0.93227 1.21263 0.96234 0.96972 0.96027 1.21626 0.97238 0.98361 0.97818 1.21040 0.96764 0.95530 0.96715 1.21581 0.98664 0.97397 0.97060 1.21370 0.95291 0.97022 0.97006 1.22122 0.97911 0.98169 0.98586 1.21111 0.86248 0.92622 0.90592 1.86524 1.48048 1.40923 1.63210 1.22164 0.96768 1.00412 0.97745 1.21391 0.96802 0.97397 0.98224 1.24714 1.01914 0.94943 0.96300 1.21047 0.87935 1.03534 1.05356 1.84291 0.93736 1.07508 1.68428 0.88580 0.88116 0.87354 0.85380 0.76276 1.23150 1.20373 0.73447 0.89806 0.90103 0.90596 0.91036 0.89874 0.91043 0.91138 0.89907 0.90516 0.90080 0.76193 0.91957 0.90726 0.92184 0.91260 0.88721 0.87889 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.13 8.62 71.24 0.61 1.75 16 2 C -0.18 0.69 6.09 24.59 0.15 0.84 16 3 C -0.08 -0.09 3.29 -20.92 -0.07 -0.16 16 4 C -0.08 -0.24 1.88 71.24 0.13 -0.11 16 5 O -0.53 0.93 11.18 -148.98 -1.67 -0.73 16 6 Si 0.74 2.74 29.60 68.60 2.03 4.77 16 7 C -0.69 -2.14 5.02 21.22 0.11 -2.03 16 8 S 2.70 17.56 5.34 -56.49 -0.30 17.26 16 9 O -0.97 -9.33 14.78 -128.00 -1.89 -11.22 16 10 O -0.99 -12.88 14.41 -128.00 -1.84 -14.72 16 11 N -1.10 -0.45 4.75 -169.40 -0.80 -1.26 16 12 C 0.16 0.12 2.35 44.99 0.11 0.22 16 13 C -0.08 -0.01 2.91 -10.79 -0.03 -0.04 16 14 C -0.11 0.34 5.01 30.59 0.15 0.49 16 15 C -0.08 0.32 3.19 -10.79 -0.03 0.29 16 16 C -0.11 0.47 5.03 30.59 0.15 0.62 16 17 C -0.09 0.19 2.91 -10.80 -0.03 0.15 16 18 C -0.13 0.23 4.81 30.59 0.15 0.38 16 19 C 0.13 -0.01 1.15 -10.79 -0.01 -0.03 16 20 O -0.58 -1.20 12.98 -148.98 -1.93 -3.13 16 21 C -0.13 0.34 4.81 30.59 0.15 0.49 16 22 C -0.10 -0.23 4.84 30.59 0.15 -0.08 16 23 C -0.06 -0.01 6.50 24.59 0.16 0.15 16 24 C -0.12 0.19 9.13 71.23 0.65 0.84 16 25 S 0.19 -0.74 23.31 -56.49 -1.32 -2.06 16 26 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 27 H 0.10 -1.34 5.21 -2.39 -0.01 -1.35 16 28 H 0.11 -1.65 6.38 -2.38 -0.02 -1.66 16 29 H 0.13 1.00 2.69 -2.38 -0.01 0.99 16 30 H 0.39 -3.79 5.48 -74.06 -0.41 -4.20 16 31 H -0.30 -3.91 7.11 99.48 0.71 -3.20 16 32 H -0.28 -2.48 7.11 99.48 0.71 -1.78 16 33 H 0.43 -1.52 6.79 -96.75 -0.66 -2.18 16 34 H 0.08 0.35 5.09 -2.39 -0.01 0.34 16 35 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.08 -0.39 6.51 -2.39 -0.02 -0.40 16 37 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.07 -0.36 8.14 -2.38 -0.02 -0.38 16 40 H 0.07 -0.36 7.42 -2.39 -0.02 -0.38 16 41 H 0.08 -0.14 6.10 -2.39 -0.01 -0.15 16 42 H 0.08 -0.32 8.14 -2.38 -0.02 -0.34 16 43 H 0.08 0.06 6.44 -2.38 -0.02 0.05 16 44 H 0.39 -2.05 9.04 -74.06 -0.67 -2.72 16 45 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.07 -0.33 8.14 -2.38 -0.02 -0.35 16 47 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 50 H 0.10 -0.67 8.14 -2.38 -0.02 -0.69 16 51 H 0.10 -0.06 6.05 -2.38 -0.01 -0.08 16 Total: 0.00 -21.50 379.01 -5.91 -27.41 By element: Atomic # 1 Polarization: -19.42 SS G_CDS: -0.67 Total: -20.09 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 2.49 Total: 3.78 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -0.80 Total: -1.26 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -7.33 Total: -29.81 kcal Atomic # 14 Polarization: 2.74 SS G_CDS: 2.03 Total: 4.77 kcal Atomic # 16 Polarization: 16.82 SS G_CDS: -1.62 Total: 15.20 kcal Total: -21.50 -5.91 -27.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_17849790_15065288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.010 kcal (2) G-P(sol) polarization free energy of solvation -21.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds