Wall clock time and date at job start Tue Mar 9 2021 13:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35995 * 117.00158 * 2 1 4 4 C 1.39155 * 120.07408 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.06926 * 359.97438 * 4 3 2 6 6 S 1.52196 * 114.00452 * 269.72271 * 5 4 3 7 7 O 1.42101 * 104.27719 * 318.93506 * 6 5 4 8 8 O 1.42094 * 104.28029 * 191.07648 * 6 5 4 9 9 C 1.81403 * 104.44709 * 75.00256 * 6 5 4 10 10 H 1.09003 * 112.90870 * 311.25768 * 9 6 5 11 11 C 1.53780 * 113.61188 * 82.50432 * 9 6 5 12 12 C 1.53782 * 87.07973 * 139.98109 * 11 9 6 13 13 H 1.08998 * 113.69005 * 89.13056 * 12 11 9 14 14 N 1.46499 * 113.61688 * 220.01682 * 12 11 9 15 15 C 1.34777 * 120.00199 * 252.50182 * 14 12 11 16 16 O 1.21513 * 119.99898 * 359.97438 * 15 14 12 17 17 O 1.34638 * 119.99834 * 180.27541 * 15 14 12 18 18 C 1.45201 * 116.99819 * 179.72501 * 17 15 14 19 19 C 1.52997 * 109.47346 * 59.99666 * 18 17 15 20 20 C 1.53000 * 109.47187 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.46698 * 299.99554 * 18 17 15 22 22 C 1.53781 * 87.08318 * 334.56664 * 12 11 9 23 23 C 1.38564 * 119.85013 * 179.72752 * 4 3 2 24 24 C 1.38236 * 120.00452 * 0.27112 * 23 4 3 25 25 C 1.50702 * 119.92680 * 179.97438 * 24 23 4 26 26 O 1.42898 * 109.46731 * 65.00571 * 25 24 23 27 27 Si 1.86303 * 109.46970 * 185.00135 * 25 24 23 28 28 C 1.38257 * 120.14584 * 0.02562 * 24 23 4 29 29 C 1.38239 * 120.14582 * 359.97438 * 28 24 23 30 30 H 1.08998 * 109.47572 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47246 * 300.00340 * 1 2 3 32 32 H 1.09002 * 109.47048 * 59.99783 * 1 2 3 33 33 H 1.08993 * 113.61656 * 25.43432 * 11 9 6 34 34 H 1.09004 * 113.61428 * 254.52733 * 11 9 6 35 35 H 0.97001 * 120.00074 * 72.49286 * 14 12 11 36 36 H 1.08997 * 109.47392 * 59.99802 * 19 18 17 37 37 H 1.08999 * 109.47056 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.47175 * 299.99773 * 19 18 17 39 39 H 1.08997 * 109.47042 * 59.99813 * 20 18 17 40 40 H 1.08999 * 109.47303 * 179.97438 * 20 18 17 41 41 H 1.09003 * 109.46990 * 300.00104 * 20 18 17 42 42 H 1.08999 * 109.47400 * 60.00485 * 21 18 17 43 43 H 1.09013 * 109.46945 * 180.02562 * 21 18 17 44 44 H 1.08997 * 109.47343 * 300.00072 * 21 18 17 45 45 H 1.08996 * 113.61616 * 139.97547 * 22 12 11 46 46 H 1.08990 * 113.61630 * 270.80129 * 22 12 11 47 47 H 1.08007 * 119.99310 * 180.30049 * 23 4 3 48 48 H 1.08994 * 109.47423 * 305.00445 * 25 24 23 49 49 H 0.96702 * 114.00333 * 60.00151 * 26 25 24 50 50 H 1.48508 * 109.99720 * 58.68382 * 27 25 24 51 51 H 1.48500 * 109.99943 * 179.97438 * 27 25 24 52 52 H 1.07998 * 119.92705 * 180.02562 * 28 24 23 53 53 H 1.07996 * 120.00064 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1794 0.1476 0.0016 6 16 4.5230 -0.3662 1.3924 7 8 4.8425 0.8056 2.1299 8 8 5.4965 -1.3754 1.1626 9 6 2.9780 -1.0984 1.9988 10 1 2.1175 -0.4422 1.8680 11 6 2.7395 -2.5336 1.5008 12 6 2.2153 -2.8519 2.9111 13 1 1.1463 -2.6757 3.0310 14 7 2.6353 -4.1632 3.4113 15 6 1.7425 -5.1692 3.4974 16 8 0.5890 -4.9883 3.1606 17 8 2.1273 -6.3727 3.9624 18 6 1.1112 -7.4075 4.0333 19 6 0.5495 -7.6677 2.6342 20 6 1.7314 -8.6946 4.5808 21 6 -0.0179 -6.9509 4.9594 22 6 3.0910 -1.6917 3.4130 23 6 4.0602 2.5233 -0.0052 24 6 3.3030 3.6798 -0.0057 25 6 3.9837 5.0243 -0.0114 26 8 4.7028 5.1888 -1.2352 27 14 2.7037 6.3691 0.1424 28 6 1.9224 3.6057 -0.0001 29 6 1.2932 2.3748 0.0057 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.6561 -3.0652 1.2455 34 1 1.9771 -2.6056 0.7250 35 1 3.5560 -4.3075 3.6803 36 1 1.3538 -7.9929 1.9744 37 1 -0.2136 -8.4442 2.6876 38 1 0.1077 -6.7509 2.2438 39 1 2.1318 -8.5096 5.5775 40 1 0.9685 -9.4713 4.6345 41 1 2.5356 -9.0197 3.9207 42 1 -0.4597 -6.0341 4.5690 43 1 -0.7805 -7.7279 5.0131 44 1 0.3823 -6.7656 5.9562 45 1 2.6124 -1.0840 4.1809 46 1 4.1032 -1.9933 3.6818 47 1 5.1386 2.5839 -0.0097 48 1 4.6765 5.0843 0.8280 49 1 4.1481 5.1466 -2.0262 50 1 1.9275 6.1906 1.3958 51 1 3.3623 7.7001 0.1387 52 1 1.3342 4.5115 -0.0009 53 1 0.2147 2.3197 0.0105 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_79710_14316444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:51 Heat of formation + Delta-G solvation = -186.794189 kcal Electronic energy + Delta-G solvation = -40023.864779 eV Core-core repulsion = 34764.474633 eV Total energy + Delta-G solvation = -5259.390146 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.152 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.56189 -41.94071 -40.50383 -40.13894 -39.29186 -38.50663 -37.91713 -37.41202 -37.12676 -35.41798 -34.18379 -32.02425 -31.87207 -28.68040 -28.37036 -28.31667 -27.21373 -27.06441 -26.30589 -24.88133 -23.73159 -22.92212 -21.82360 -21.39029 -20.81939 -19.79420 -19.47733 -19.24097 -18.83039 -18.56783 -18.13808 -17.72424 -17.42158 -17.22655 -16.94891 -16.56747 -16.40602 -16.25183 -16.00295 -15.90134 -15.58663 -15.39702 -15.35196 -15.25971 -14.58100 -14.48171 -14.31553 -14.18370 -14.15952 -13.86739 -13.55695 -13.52437 -13.47006 -13.42987 -13.29312 -13.27034 -13.13988 -13.09378 -12.91892 -12.87963 -12.85319 -12.55812 -12.44538 -12.31225 -12.16383 -12.05903 -12.03854 -11.83130 -11.42857 -11.39671 -11.13790 -10.48803 -10.29780 -10.23554 -9.48926 -4.98923 -1.15422 -0.13985 -0.00657 0.87073 1.12598 1.30479 1.67275 1.67734 1.93236 2.02655 2.23370 2.40555 2.64539 2.88226 3.04760 3.15059 3.42319 3.43272 3.52106 3.54352 3.66450 3.69584 3.72945 3.78845 3.93425 3.95888 4.00419 4.22597 4.31841 4.33817 4.37382 4.42761 4.44857 4.47419 4.53334 4.60901 4.62629 4.67414 4.73102 4.75735 4.76048 4.78288 4.81579 4.86030 4.86615 4.89760 4.95098 5.10831 5.15514 5.24530 5.26652 5.35128 5.38967 5.54435 6.05907 6.31390 6.78072 7.27145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.319 6.319 3 C 0.128 3.872 4 C 0.002 3.998 5 O -0.659 6.659 6 S 2.590 3.410 7 O -0.979 6.979 8 O -0.964 6.964 9 C -0.612 4.612 10 H 0.183 0.817 11 C -0.121 4.121 12 C 0.160 3.840 13 H 0.133 0.867 14 N -0.697 5.697 15 C 0.647 3.353 16 O -0.587 6.587 17 O -0.371 6.371 18 C 0.126 3.874 19 C -0.180 4.180 20 C -0.139 4.139 21 C -0.179 4.179 22 C -0.116 4.116 23 C -0.050 4.050 24 C -0.145 4.145 25 C -0.087 4.087 26 O -0.558 6.558 27 Si 0.798 3.202 28 C -0.047 4.047 29 C -0.176 4.176 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.417 0.583 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.123 0.877 46 H 0.105 0.895 47 H 0.129 0.871 48 H 0.102 0.898 49 H 0.397 0.603 50 H -0.271 1.271 51 H -0.303 1.303 52 H 0.176 0.824 53 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 1.331 -0.507 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.041 4.041 5 O -0.618 6.618 6 S 2.690 3.310 7 O -0.977 6.977 8 O -0.962 6.962 9 C -0.723 4.723 10 H 0.201 0.799 11 C -0.161 4.161 12 C 0.055 3.945 13 H 0.151 0.849 14 N -0.356 5.356 15 C 0.401 3.599 16 O -0.477 6.477 17 O -0.286 6.286 18 C 0.090 3.910 19 C -0.237 4.237 20 C -0.196 4.196 21 C -0.236 4.236 22 C -0.156 4.156 23 C -0.071 4.071 24 C -0.145 4.145 25 C -0.195 4.195 26 O -0.367 6.367 27 Si 0.702 3.298 28 C -0.065 4.065 29 C -0.194 4.194 30 H 0.136 0.864 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.142 0.858 46 H 0.123 0.877 47 H 0.147 0.853 48 H 0.120 0.880 49 H 0.247 0.753 50 H -0.197 1.197 51 H -0.231 1.231 52 H 0.193 0.807 53 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.607 1.906 0.016 9.794 hybrid contribution 0.977 -0.776 0.362 1.299 sum -8.630 1.130 0.378 8.712 Atomic orbital electron populations 1.23658 0.74851 1.06503 1.03990 1.86196 1.24741 1.24967 1.87335 1.19208 0.89325 0.87449 0.96097 1.17648 0.86868 0.82436 1.17102 1.85686 1.73044 1.46311 1.56796 1.05597 0.77739 0.74375 0.73257 1.93597 1.84085 1.47057 1.72964 1.93586 1.57926 1.61501 1.83162 1.31918 1.21927 1.09705 1.08799 0.79946 1.23292 1.04149 0.89065 0.99603 1.22442 1.00974 0.78575 0.92480 0.84895 1.44819 1.13042 1.09336 1.68387 1.18329 0.84161 0.81009 0.76422 1.90890 1.18546 1.83358 1.54929 1.86328 1.43913 1.19946 1.78380 1.22371 0.86505 0.85303 0.96798 1.22475 1.02091 1.03773 0.95378 1.21900 1.02376 0.93487 1.01846 1.22469 0.98425 1.03716 0.99002 1.23249 1.02862 0.96386 0.93055 1.21072 1.01260 0.90089 0.94662 1.20309 0.94468 0.94995 1.04774 1.25469 1.04198 0.99771 0.90029 1.86501 1.39112 1.95176 1.15877 0.93843 0.78234 0.72699 0.84998 1.21418 0.92635 0.99177 0.93241 1.21607 1.02584 0.89579 1.05653 0.86414 0.89743 0.90111 0.88326 0.87502 0.74580 0.92175 0.89438 0.91410 0.91253 0.88256 0.91375 0.91404 0.89470 0.92025 0.85819 0.87656 0.85265 0.88035 0.75270 1.19744 1.23142 0.80746 0.79316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.32 1.37 7.32 -79.62 -0.58 0.79 16 3 C 0.13 -0.21 5.91 22.57 0.13 -0.07 16 4 C 0.00 0.01 4.80 22.57 0.11 0.12 16 5 O -0.66 -5.84 9.84 -60.48 -0.60 -6.44 16 6 S 2.59 20.61 5.14 -56.49 -0.29 20.32 16 7 O -0.98 -11.90 16.26 -118.57 -1.93 -13.83 16 8 O -0.96 -13.79 17.27 -118.57 -2.05 -15.83 16 9 C -0.61 0.82 3.29 31.12 0.10 0.93 16 10 H 0.18 -0.98 5.30 -2.39 -0.01 -0.99 16 11 C -0.12 0.13 7.44 31.12 0.23 0.37 16 12 C 0.16 -0.38 4.24 45.52 0.19 -0.18 16 13 H 0.13 -0.35 7.46 -2.39 -0.02 -0.37 16 14 N -0.70 -0.06 5.36 -567.60 -3.04 -3.10 16 15 C 0.65 3.51 8.06 129.79 1.05 4.55 16 16 O -0.59 -5.32 11.48 19.80 0.23 -5.10 16 17 O -0.37 -1.89 9.94 -55.48 -0.55 -2.44 16 18 C 0.13 0.29 1.13 -10.80 -0.01 0.28 16 19 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 20 C -0.14 0.29 8.85 71.98 0.64 0.93 16 21 C -0.18 -0.34 8.37 71.98 0.60 0.27 16 22 C -0.12 0.49 7.42 31.12 0.23 0.72 16 23 C -0.05 -0.28 8.68 22.35 0.19 -0.09 16 24 C -0.14 0.10 5.35 -19.86 -0.11 -0.01 16 25 C -0.09 0.09 2.80 71.24 0.20 0.28 16 26 O -0.56 -0.20 12.83 -148.98 -1.91 -2.11 16 27 Si 0.80 -4.55 29.79 68.60 2.04 -2.51 16 28 C -0.05 0.33 8.66 22.27 0.19 0.53 16 29 C -0.18 1.39 9.04 22.35 0.20 1.59 16 30 H 0.12 -1.57 8.14 -2.39 -0.02 -1.59 16 31 H 0.08 -1.34 7.65 -2.38 -0.02 -1.36 16 32 H 0.08 -1.18 7.68 -2.39 -0.02 -1.20 16 33 H 0.10 0.11 7.43 -2.39 -0.02 0.09 16 34 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.42 -1.34 8.84 -92.71 -0.82 -2.16 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.07 0.46 5.88 -2.39 -0.01 0.44 16 39 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.10 -0.55 8.14 -2.39 -0.02 -0.56 16 41 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.07 0.43 5.88 -2.39 -0.01 0.41 16 43 H 0.09 -0.13 8.14 -2.38 -0.02 -0.15 16 44 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 46 H 0.11 -0.54 8.08 -2.39 -0.02 -0.56 16 47 H 0.13 1.06 8.06 -2.91 -0.02 1.04 16 48 H 0.10 0.19 7.96 -2.39 -0.02 0.17 16 49 H 0.40 -3.51 8.70 -74.06 -0.64 -4.16 16 50 H -0.27 0.75 7.11 99.48 0.71 1.46 16 51 H -0.30 -0.91 7.11 99.48 0.71 -0.21 16 52 H 0.18 -2.46 4.89 -2.91 -0.01 -2.48 16 53 H 0.19 -3.00 6.30 -2.91 -0.02 -3.01 16 Total: 0.00 -32.08 433.19 -3.46 -35.54 By element: Atomic # 1 Polarization: -16.30 SS G_CDS: -0.45 Total: -16.75 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.67 Total: 11.46 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -3.04 Total: -3.10 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -7.39 Total: -44.96 kcal Atomic # 14 Polarization: -4.55 SS G_CDS: 2.04 Total: -2.51 kcal Atomic # 16 Polarization: 20.61 SS G_CDS: -0.29 Total: 20.32 kcal Total: -32.08 -3.46 -35.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_79710_14316444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.251 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds