Wall clock time and date at job start Tue Mar 9 2021 13:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35985 * 117.00007 * 2 1 4 4 C 1.39152 * 120.06743 * 180.02562 * 3 2 1 5 5 O 1.36002 * 120.06569 * 359.97438 * 4 3 2 6 6 S 1.52200 * 113.99789 * 267.95966 * 5 4 3 7 7 O 1.42105 * 104.27756 * 168.83900 * 6 5 4 8 8 O 1.42092 * 104.28358 * 40.98282 * 6 5 4 9 9 C 1.81398 * 104.45057 * 284.90729 * 6 5 4 10 10 H 1.09003 * 112.84597 * 54.22071 * 9 6 5 11 11 C 1.53780 * 113.61689 * 185.41514 * 9 6 5 12 12 C 1.53781 * 87.08157 * 140.06871 * 11 9 6 13 13 H 1.09002 * 113.61507 * 89.11682 * 12 11 9 14 14 N 1.46500 * 113.61445 * 220.02137 * 12 11 9 15 15 C 1.34782 * 119.99782 * 204.99542 * 14 12 11 16 16 O 1.21509 * 120.00307 * 0.02562 * 15 14 12 17 17 O 1.34638 * 119.99595 * 179.97438 * 15 14 12 18 18 C 1.45207 * 116.99520 * 180.02562 * 17 15 14 19 19 C 1.52992 * 109.47045 * 60.00311 * 18 17 15 20 20 C 1.52997 * 109.46761 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47022 * 300.00044 * 18 17 15 22 22 C 1.53779 * 113.69289 * 282.95636 * 9 6 5 23 23 C 1.38565 * 119.87071 * 179.72862 * 4 3 2 24 24 C 1.38237 * 120.01095 * 0.24720 * 23 4 3 25 25 C 1.50703 * 119.92804 * 180.02562 * 24 23 4 26 26 O 1.42897 * 109.47413 * 255.00005 * 25 24 23 27 27 Si 1.86309 * 109.46715 * 135.00469 * 25 24 23 28 28 C 1.38323 * 120.13638 * 0.02562 * 24 23 4 29 29 Br 1.89108 * 119.93841 * 180.02562 * 28 24 23 30 30 C 1.38320 * 120.12936 * 0.03869 * 28 24 23 31 31 H 1.08997 * 109.47595 * 59.99561 * 1 2 3 32 32 H 1.09001 * 109.47501 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47031 * 299.99918 * 1 2 3 34 34 H 1.09003 * 113.61339 * 254.61672 * 11 9 6 35 35 H 1.08993 * 113.61265 * 25.52323 * 11 9 6 36 36 H 0.96993 * 120.00173 * 25.00056 * 14 12 11 37 37 H 1.08998 * 109.47477 * 59.99850 * 19 18 17 38 38 H 1.08999 * 109.47393 * 179.97438 * 19 18 17 39 39 H 1.08996 * 109.47227 * 299.99689 * 19 18 17 40 40 H 1.08998 * 109.47331 * 59.99836 * 20 18 17 41 41 H 1.08997 * 109.47405 * 180.02562 * 20 18 17 42 42 H 1.08998 * 109.47292 * 299.99963 * 20 18 17 43 43 H 1.08996 * 109.47155 * 60.00369 * 21 18 17 44 44 H 1.09007 * 109.47049 * 179.97438 * 21 18 17 45 45 H 1.08998 * 109.47270 * 300.00287 * 21 18 17 46 46 H 1.08997 * 113.61410 * 334.55304 * 22 9 6 47 47 H 1.08996 * 113.61769 * 105.37221 * 22 9 6 48 48 H 1.08004 * 119.99271 * 180.27565 * 23 4 3 49 49 H 1.08995 * 109.47504 * 15.00742 * 25 24 23 50 50 H 0.96703 * 114.00323 * 300.00999 * 26 25 24 51 51 H 1.48500 * 109.99675 * 179.97438 * 27 25 24 52 52 H 1.48500 * 109.99905 * 301.31729 * 27 25 24 53 53 H 1.08000 * 120.00746 * 179.97438 * 30 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4359 1.2861 -0.0005 5 8 4.1792 0.1472 -0.0005 6 16 4.5595 -0.3437 1.3890 7 8 5.0821 -1.6469 1.1694 8 8 3.3851 -0.1466 2.1641 9 6 5.8731 0.7868 1.9247 10 1 5.5786 1.8347 1.8684 11 6 6.5106 0.3975 3.2689 12 6 7.8620 0.7995 2.6548 13 1 8.1112 1.8509 2.7981 14 7 8.9606 -0.1010 3.0134 15 6 10.2314 0.3479 3.0002 16 8 10.4659 1.4994 2.6915 17 8 11.2409 -0.4796 3.3302 18 6 12.5837 0.0720 3.2948 19 6 12.6786 1.2462 4.2710 20 6 13.5896 -1.0085 3.6964 21 6 12.8975 0.5593 1.8788 22 6 7.2394 0.4955 1.2819 23 6 4.0607 2.5229 -0.0062 24 6 3.3041 3.6798 -0.0062 25 6 3.9856 5.0239 -0.0130 26 8 3.8957 5.6101 1.2871 27 14 3.1530 6.1359 -1.2545 28 6 1.9228 3.6062 0.0001 29 35 0.8932 5.1924 -0.0007 30 6 1.2931 2.3747 0.0071 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 6.2019 1.0331 4.0989 35 1 6.4337 -0.6655 3.4971 36 1 8.7734 -1.0201 3.2601 37 1 12.4550 0.8990 5.2797 38 1 13.6866 1.6600 4.2447 39 1 11.9620 2.0158 3.9845 40 1 13.5218 -1.8448 3.0006 41 1 14.5975 -0.5944 3.6703 42 1 13.3661 -1.3561 4.7050 43 1 12.1809 1.3290 1.5923 44 1 13.9054 0.9738 1.8523 45 1 12.8298 -0.2772 1.1833 46 1 7.3616 -0.5408 0.9668 47 1 7.5183 1.2092 0.5068 48 1 5.1390 2.5829 -0.0112 49 1 5.0340 4.8984 -0.2833 50 1 2.9893 5.7512 1.5932 51 1 3.8154 7.4649 -1.2704 52 1 3.2117 5.5224 -2.6055 53 1 0.2145 2.3195 0.0124 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_79904_14316444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:01 Heat of formation + Delta-G solvation = -190.063448 kcal Electronic energy + Delta-G solvation = -42295.755046 eV Core-core repulsion = 36696.405132 eV Total energy + Delta-G solvation = -5599.349914 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 494.063 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.73509 -41.95505 -40.49473 -40.36896 -39.59291 -38.50521 -37.94461 -37.42259 -37.27199 -35.43861 -34.22028 -33.88134 -32.43060 -30.86238 -28.78076 -28.38577 -28.32515 -27.31470 -27.09142 -26.42937 -24.80015 -23.65396 -23.42378 -21.87006 -21.45294 -20.89409 -19.74263 -19.45281 -19.26849 -19.02591 -18.78108 -18.28185 -18.00777 -17.46000 -17.24694 -16.94820 -16.72905 -16.51954 -16.37711 -16.06438 -15.91319 -15.65990 -15.56333 -15.44167 -15.33961 -14.97748 -14.51588 -14.49638 -14.24640 -14.18362 -14.02101 -13.97591 -13.87162 -13.52487 -13.48064 -13.40444 -13.30523 -13.21089 -13.15872 -12.95882 -12.93324 -12.89072 -12.87960 -12.60635 -12.57710 -12.34137 -12.31956 -12.28285 -12.17294 -12.10302 -11.91242 -11.44973 -11.41457 -11.15605 -10.65205 -10.39021 -10.31351 -9.60311 -4.78920 -1.31149 -0.53854 -0.29915 -0.15979 0.77963 1.08419 1.11303 1.47856 1.66347 1.82773 1.90018 1.97082 2.37778 2.58919 2.80931 2.98551 3.12345 3.14367 3.26289 3.39655 3.40706 3.44991 3.56672 3.61810 3.71808 3.77623 3.92293 4.01795 4.06674 4.18838 4.22004 4.26674 4.32749 4.33318 4.36461 4.40513 4.50701 4.52916 4.59521 4.61019 4.65565 4.70476 4.72957 4.74851 4.77562 4.80707 4.85675 4.88560 5.01629 5.09647 5.23229 5.25314 5.33692 5.53676 5.93750 6.30570 6.47880 7.26330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.321 6.321 3 C 0.153 3.847 4 C 0.030 3.970 5 O -0.656 6.656 6 S 2.595 3.405 7 O -0.956 6.956 8 O -0.964 6.964 9 C -0.629 4.629 10 H 0.186 0.814 11 C -0.113 4.113 12 C 0.155 3.845 13 H 0.131 0.869 14 N -0.695 5.695 15 C 0.646 3.354 16 O -0.589 6.589 17 O -0.370 6.370 18 C 0.127 3.873 19 C -0.180 4.180 20 C -0.139 4.139 21 C -0.181 4.181 22 C -0.130 4.130 23 C -0.068 4.068 24 C -0.108 4.108 25 C -0.050 4.050 26 O -0.536 6.536 27 Si 0.573 3.427 28 C -0.045 4.045 29 Br 0.112 6.888 30 C -0.150 4.150 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.418 0.582 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.185 0.815 49 H 0.130 0.870 50 H 0.385 0.615 51 H -0.266 1.266 52 H -0.273 1.273 53 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 1.794 1.993 5.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.234 6.234 3 C 0.103 3.897 4 C -0.013 4.013 5 O -0.614 6.614 6 S 2.694 3.306 7 O -0.954 6.954 8 O -0.962 6.962 9 C -0.739 4.739 10 H 0.204 0.796 11 C -0.152 4.152 12 C 0.050 3.950 13 H 0.148 0.852 14 N -0.355 5.355 15 C 0.400 3.600 16 O -0.479 6.479 17 O -0.285 6.285 18 C 0.091 3.909 19 C -0.237 4.237 20 C -0.196 4.196 21 C -0.238 4.238 22 C -0.170 4.170 23 C -0.088 4.088 24 C -0.111 4.111 25 C -0.162 4.162 26 O -0.344 6.344 27 Si 0.475 3.525 28 C -0.126 4.126 29 Br 0.198 6.802 30 C -0.170 4.170 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.099 0.901 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.256 0.744 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.123 0.877 47 H 0.130 0.870 48 H 0.203 0.797 49 H 0.148 0.852 50 H 0.235 0.765 51 H -0.191 1.191 52 H -0.199 1.199 53 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.138 2.503 0.898 4.919 hybrid contribution 0.946 -0.837 -0.072 1.265 sum -3.192 1.666 0.826 3.694 Atomic orbital electron populations 1.23698 0.74690 1.06802 1.03829 1.86200 1.25064 1.25245 1.86859 1.19175 0.90596 0.86448 0.93484 1.17704 0.86941 0.82756 1.13899 1.85722 1.71626 1.46548 1.57530 1.05480 0.76138 0.75917 0.73055 1.93605 1.82031 1.36572 1.83176 1.93612 1.45129 1.86503 1.70987 1.32009 1.13567 1.18803 1.09562 0.79629 1.23223 0.93075 1.04647 0.94271 1.22475 0.82709 0.95902 0.93957 0.85169 1.44788 1.02336 1.16557 1.71782 1.18359 0.82430 0.83037 0.76182 1.90905 1.84074 1.18723 1.54213 1.86326 1.16896 1.43340 1.81899 1.22365 0.76862 0.95021 0.96683 1.22472 1.04338 0.98181 0.98712 1.21897 0.97412 0.97519 1.02744 1.22481 1.03864 1.02330 0.95110 1.23427 0.89129 1.05113 0.99328 1.21303 1.02839 0.87665 0.97020 1.19974 0.91858 0.96689 1.02536 1.24740 1.05816 0.92136 0.93464 1.86541 1.33823 1.82713 1.31289 0.93234 1.00201 0.79731 0.79296 1.21686 0.93568 0.92770 1.04541 1.96399 1.63576 1.26519 1.93745 1.21368 1.02761 0.88244 1.04583 0.89596 0.86252 0.90057 0.85675 0.87242 0.74423 0.91911 0.89498 0.91550 0.91280 0.88298 0.91169 0.91554 0.89479 0.92040 0.87667 0.87042 0.79745 0.85227 0.76513 1.19088 1.19869 0.79342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.32 -1.33 9.93 -75.83 -0.75 -2.09 16 3 C 0.15 0.36 5.99 22.57 0.14 0.50 16 4 C 0.03 0.09 4.77 22.57 0.11 0.19 16 5 O -0.66 -3.56 9.84 -60.59 -0.60 -4.16 16 6 S 2.60 12.30 5.09 -56.49 -0.29 12.02 16 7 O -0.96 -10.78 17.43 -118.57 -2.07 -12.85 16 8 O -0.96 -8.49 16.06 -117.86 -1.89 -10.39 16 9 C -0.63 2.65 3.82 31.12 0.12 2.77 16 10 H 0.19 -1.73 6.27 -2.39 -0.01 -1.74 16 11 C -0.11 0.64 7.42 31.12 0.23 0.87 16 12 C 0.15 -0.44 4.24 45.52 0.19 -0.25 16 13 H 0.13 -0.26 7.47 -2.39 -0.02 -0.28 16 14 N -0.70 0.16 5.36 -567.58 -3.04 -2.88 16 15 C 0.65 3.73 8.06 129.79 1.05 4.78 16 16 O -0.59 -6.00 11.48 19.81 0.23 -5.78 16 17 O -0.37 -1.96 9.94 -55.48 -0.55 -2.51 16 18 C 0.13 0.35 1.13 -10.80 -0.01 0.34 16 19 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 20 C -0.14 0.26 8.85 71.98 0.64 0.89 16 21 C -0.18 -0.55 8.37 71.98 0.60 0.06 16 22 C -0.13 0.45 7.44 31.12 0.23 0.68 16 23 C -0.07 0.15 8.11 22.35 0.18 0.33 16 24 C -0.11 0.26 4.78 -19.84 -0.09 0.17 16 25 C -0.05 0.09 2.79 71.24 0.20 0.29 16 26 O -0.54 0.73 12.88 -148.98 -1.92 -1.19 16 27 Si 0.57 0.68 26.93 68.60 1.85 2.53 16 28 C -0.05 0.19 5.78 22.31 0.13 0.32 16 29 Br 0.11 -0.88 26.04 -20.37 -0.53 -1.41 16 30 C -0.15 0.58 8.77 22.37 0.20 0.78 16 31 H 0.09 -0.88 7.68 -2.39 -0.02 -0.90 16 32 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.08 -0.71 7.65 -2.38 -0.02 -0.73 16 34 H 0.12 -1.14 8.14 -2.39 -0.02 -1.16 16 35 H 0.11 -0.76 8.08 -2.39 -0.02 -0.78 16 36 H 0.42 -1.66 8.84 -92.71 -0.82 -2.48 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.07 0.50 5.88 -2.39 -0.01 0.48 16 40 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.07 0.52 5.88 -2.39 -0.01 0.50 16 44 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 45 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.10 -0.20 7.55 -2.39 -0.02 -0.22 16 47 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 48 H 0.19 -1.57 7.11 -2.91 -0.02 -1.60 16 49 H 0.13 -0.48 7.77 -2.39 -0.02 -0.49 16 50 H 0.39 -2.64 7.30 -74.06 -0.54 -3.18 16 51 H -0.27 -2.15 7.11 99.48 0.71 -1.44 16 52 H -0.27 -1.90 7.11 99.48 0.71 -1.19 16 53 H 0.19 -1.97 6.30 -2.91 -0.02 -1.98 16 Total: 0.00 -29.99 448.90 -4.28 -34.27 By element: Atomic # 1 Polarization: -19.17 SS G_CDS: -0.33 Total: -19.50 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 5.62 Total: 13.93 kcal Atomic # 7 Polarization: 0.16 SS G_CDS: -3.04 Total: -2.88 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -7.55 Total: -38.95 kcal Atomic # 14 Polarization: 0.68 SS G_CDS: 1.85 Total: 2.53 kcal Atomic # 16 Polarization: 12.30 SS G_CDS: -0.29 Total: 12.02 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.53 Total: -1.41 kcal Total: -29.99 -4.28 -34.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_79904_14316444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.794 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds