Wall clock time and date at job start Tue Mar 9 2021 13:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35991 * 117.00141 * 2 1 4 4 C 1.39142 * 120.06815 * 180.02562 * 3 2 1 5 5 O 1.36007 * 120.06426 * 0.04113 * 4 3 2 6 6 S 1.52199 * 113.99828 * 267.74305 * 5 4 3 7 7 O 1.42101 * 104.27990 * 41.40990 * 6 5 4 8 8 O 1.42103 * 104.27708 * 169.26777 * 6 5 4 9 9 C 1.81406 * 104.45283 * 285.33737 * 6 5 4 10 10 H 1.08997 * 112.84598 * 54.11125 * 9 6 5 11 11 C 1.53774 * 113.61370 * 185.30700 * 9 6 5 12 12 C 1.53788 * 87.07902 * 139.98381 * 11 9 6 13 13 H 1.08997 * 113.61302 * 220.02360 * 12 11 9 14 14 N 1.46495 * 113.61442 * 89.11581 * 12 11 9 15 15 C 1.34777 * 119.99910 * 155.00526 * 14 12 11 16 16 O 1.21510 * 119.99995 * 359.97438 * 15 14 12 17 17 O 1.34637 * 120.00047 * 180.02562 * 15 14 12 18 18 C 1.45199 * 116.99830 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47340 * 59.99497 * 18 17 15 20 20 C 1.53004 * 109.46763 * 179.97438 * 18 17 15 21 21 C 1.53000 * 109.46959 * 299.98835 * 18 17 15 22 22 C 1.53777 * 113.61394 * 282.80945 * 9 6 5 23 23 C 1.38560 * 119.87583 * 180.02562 * 4 3 2 24 24 C 1.38241 * 120.00574 * 359.97438 * 23 4 3 25 25 C 1.50706 * 119.93183 * 179.97438 * 24 23 4 26 26 O 1.42907 * 109.46981 * 104.88955 * 25 24 23 27 27 Si 1.86293 * 109.47185 * 344.89109 * 25 24 23 28 28 C 1.38337 * 120.13801 * 0.25456 * 24 23 4 29 29 Br 1.89104 * 119.93637 * 179.72287 * 28 24 23 30 30 C 1.38319 * 120.12309 * 359.49116 * 28 24 23 31 31 H 1.09000 * 109.47206 * 60.00411 * 1 2 3 32 32 H 1.09005 * 109.46918 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47129 * 299.99936 * 1 2 3 34 34 H 1.09001 * 113.61815 * 254.52933 * 11 9 6 35 35 H 1.08997 * 113.61900 * 25.35517 * 11 9 6 36 36 H 0.96999 * 119.99816 * 334.99816 * 14 12 11 37 37 H 1.08992 * 109.47225 * 60.00500 * 19 18 17 38 38 H 1.09002 * 109.46906 * 179.97438 * 19 18 17 39 39 H 1.09000 * 109.47103 * 299.99454 * 19 18 17 40 40 H 1.08998 * 109.47334 * 60.00200 * 20 18 17 41 41 H 1.09002 * 109.46992 * 179.97438 * 20 18 17 42 42 H 1.09002 * 109.47149 * 299.99774 * 20 18 17 43 43 H 1.08996 * 109.46677 * 60.00586 * 21 18 17 44 44 H 1.09002 * 109.47164 * 180.02562 * 21 18 17 45 45 H 1.08998 * 109.47117 * 300.00139 * 21 18 17 46 46 H 1.09001 * 113.61451 * 334.56333 * 22 9 6 47 47 H 1.08999 * 113.61938 * 105.46749 * 22 9 6 48 48 H 1.07997 * 120.00455 * 180.02562 * 23 4 3 49 49 H 1.09002 * 109.47295 * 224.88395 * 25 24 23 50 50 H 0.96704 * 113.99735 * 300.00277 * 26 25 24 51 51 H 1.48500 * 110.00249 * 65.26824 * 27 25 24 52 52 H 1.48498 * 110.00251 * 186.59182 * 27 25 24 53 53 H 1.08004 * 120.00355 * 180.26098 * 30 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2861 -0.0005 5 8 4.1792 0.1472 -0.0019 6 16 4.5640 -0.3426 1.3868 7 8 3.3888 -0.1540 2.1631 8 8 5.0952 -1.6419 1.1655 9 6 5.8703 0.7964 1.9227 10 1 5.5693 1.8424 1.8658 11 6 6.5097 0.4115 3.2672 12 6 7.8591 0.8196 2.6527 13 1 8.6797 0.1539 2.9201 14 7 8.1871 2.2345 2.8439 15 6 9.4739 2.6352 2.8343 16 8 10.3620 1.8228 2.6676 17 8 9.7754 3.9355 3.0105 18 6 11.1820 4.2947 2.9890 19 6 11.7855 3.9124 1.6360 20 6 11.3265 5.8028 3.2036 21 6 11.9162 3.5479 4.1044 22 6 7.2380 0.5112 1.2801 23 6 4.0608 2.5228 0.0000 24 6 3.3041 3.6797 0.0005 25 6 3.9856 5.0239 0.0017 26 8 3.8926 5.6062 -1.3000 27 14 5.7786 4.8108 0.4600 28 6 1.9227 3.6062 0.0059 29 35 0.8933 5.1924 0.0145 30 6 1.2931 2.3746 0.0000 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 6.1979 1.0463 4.0967 35 1 6.4367 -0.6514 3.4971 36 1 7.4781 2.8829 2.9773 37 1 11.2625 4.4446 0.8415 38 1 12.8413 4.1826 1.6198 39 1 11.6825 2.8381 1.4828 40 1 10.8966 6.0755 4.1673 41 1 12.3825 6.0724 3.1879 42 1 10.8035 6.3346 2.4088 43 1 11.8133 2.4737 3.9511 44 1 12.9722 3.8179 4.0885 45 1 11.4863 3.8204 5.0682 46 1 7.3653 -0.5248 0.9661 47 1 7.5141 1.2263 0.5053 48 1 5.1391 2.5830 -0.0008 49 1 3.5002 5.6768 0.7272 50 1 4.3046 5.0780 -1.9975 51 1 6.4813 4.0282 -0.5884 52 1 6.4233 6.1389 0.6202 53 1 0.2145 2.3195 -0.0001 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_79904_17701012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:05 Heat of formation + Delta-G solvation = -174.381163 kcal Electronic energy + Delta-G solvation = -43283.272788 eV Core-core repulsion = 37684.602909 eV Total energy + Delta-G solvation = -5598.669879 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 494.063 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.70845 -41.93735 -40.43778 -40.37236 -39.53939 -38.43603 -37.85083 -37.40107 -37.27617 -35.33910 -33.98978 -33.38744 -32.46273 -30.51153 -28.81019 -28.34979 -28.28901 -27.31656 -27.02781 -26.39047 -24.78834 -23.82513 -23.29989 -21.86449 -21.25238 -20.80860 -19.69682 -19.61085 -19.14068 -19.02116 -18.66145 -18.14106 -17.66416 -17.49369 -17.16465 -16.94500 -16.78292 -16.49390 -16.34187 -16.17221 -15.92405 -15.66267 -15.64204 -15.40586 -15.17947 -14.67580 -14.55293 -14.40536 -14.33151 -14.15687 -13.98338 -13.87913 -13.78705 -13.76010 -13.44068 -13.33570 -13.30738 -13.20829 -13.12415 -12.90604 -12.84938 -12.61373 -12.55954 -12.52912 -12.46353 -12.33945 -12.16004 -12.01079 -11.94965 -11.73007 -11.38527 -11.32487 -11.29362 -11.10926 -10.74437 -10.28299 -10.27186 -9.62183 -5.15340 -1.23176 -0.46517 -0.29831 0.29487 0.84410 1.07469 1.13668 1.44638 1.73325 1.82574 1.89539 1.90407 2.44853 2.66181 2.88779 3.02597 3.13308 3.15622 3.26023 3.40527 3.46209 3.50811 3.65096 3.75199 3.76003 3.81163 3.94917 3.95741 4.03342 4.22195 4.28797 4.33862 4.38728 4.41887 4.47879 4.50245 4.52432 4.56438 4.62939 4.64777 4.66919 4.74579 4.77577 4.78615 4.82533 4.84315 4.89399 4.92771 5.01451 5.13964 5.28401 5.29575 5.39855 5.60061 5.92832 6.39217 6.42991 7.34462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.320 6.320 3 C 0.157 3.843 4 C 0.034 3.966 5 O -0.657 6.657 6 S 2.587 3.413 7 O -0.964 6.964 8 O -0.957 6.957 9 C -0.641 4.641 10 H 0.185 0.815 11 C -0.107 4.107 12 C 0.151 3.849 13 H 0.115 0.885 14 N -0.683 5.683 15 C 0.647 3.353 16 O -0.588 6.588 17 O -0.366 6.366 18 C 0.129 3.871 19 C -0.182 4.182 20 C -0.140 4.140 21 C -0.180 4.180 22 C -0.130 4.130 23 C -0.083 4.083 24 C -0.107 4.107 25 C -0.081 4.081 26 O -0.528 6.528 27 Si 0.730 3.270 28 C -0.018 4.018 29 Br -0.012 7.012 30 C -0.164 4.164 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.421 0.579 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.117 0.883 47 H 0.104 0.896 48 H 0.177 0.823 49 H 0.133 0.867 50 H 0.388 0.612 51 H -0.257 1.257 52 H -0.283 1.283 53 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 4.866 2.482 5.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.232 6.232 3 C 0.107 3.893 4 C -0.009 4.009 5 O -0.616 6.616 6 S 2.687 3.313 7 O -0.963 6.963 8 O -0.955 6.955 9 C -0.751 4.751 10 H 0.202 0.798 11 C -0.146 4.146 12 C 0.045 3.955 13 H 0.133 0.867 14 N -0.343 5.343 15 C 0.401 3.599 16 O -0.478 6.478 17 O -0.280 6.280 18 C 0.093 3.907 19 C -0.240 4.240 20 C -0.197 4.197 21 C -0.238 4.238 22 C -0.170 4.170 23 C -0.103 4.103 24 C -0.110 4.110 25 C -0.190 4.190 26 O -0.336 6.336 27 Si 0.632 3.368 28 C -0.099 4.099 29 Br 0.075 6.925 30 C -0.184 4.184 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.259 0.741 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.135 0.865 47 H 0.123 0.877 48 H 0.194 0.806 49 H 0.151 0.849 50 H 0.237 0.763 51 H -0.182 1.182 52 H -0.209 1.209 53 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.898 4.858 2.325 5.460 hybrid contribution -0.250 0.040 -1.281 1.306 sum -1.148 4.898 1.044 5.138 Atomic orbital electron populations 1.23643 0.74944 1.06692 1.03465 1.86190 1.24798 1.25382 1.86874 1.19171 0.90713 0.86179 0.93231 1.17445 0.86603 0.82635 1.14195 1.85728 1.71525 1.46484 1.57842 1.05723 0.76320 0.76185 0.73085 1.93617 1.45219 1.86609 1.70823 1.93609 1.81798 1.36974 1.83117 1.32364 1.13833 1.18450 1.10437 0.79763 1.23175 0.92670 1.05187 0.93538 1.21598 0.97919 0.80799 0.95145 0.86708 1.44267 1.04647 1.09642 1.75739 1.18285 0.84323 0.81439 0.75866 1.90933 1.47054 1.54406 1.55430 1.86308 1.31706 1.24884 1.85111 1.22320 0.75305 0.96684 0.96409 1.22498 1.02357 1.03386 0.95726 1.21903 1.04075 0.90167 1.03516 1.22476 1.01575 1.02000 0.97712 1.23392 0.89097 1.05438 0.99051 1.21198 1.01864 0.88510 0.98740 1.19975 0.91879 0.95962 1.03165 1.25275 1.12268 0.92043 0.89430 1.86676 1.80450 1.50038 1.16403 0.94962 0.71954 0.82110 0.87788 1.21821 0.94167 0.92885 1.01042 1.96877 1.69033 1.29700 1.96898 1.21401 1.02339 0.89003 1.05705 0.90124 0.86064 0.90403 0.85148 0.86189 0.74053 0.92058 0.89733 0.91401 0.90893 0.88582 0.91338 0.91481 0.89803 0.91707 0.86481 0.87710 0.80646 0.84922 0.76264 1.18233 1.20929 0.80748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.32 -1.68 9.93 -76.02 -0.75 -2.43 16 3 C 0.16 0.51 6.00 22.56 0.14 0.65 16 4 C 0.03 0.08 4.78 22.56 0.11 0.19 16 5 O -0.66 -3.09 9.84 -60.65 -0.60 -3.69 16 6 S 2.59 9.27 5.09 -56.49 -0.29 8.98 16 7 O -0.96 -7.48 16.09 -117.89 -1.90 -9.37 16 8 O -0.96 -10.15 17.42 -118.57 -2.07 -12.21 16 9 C -0.64 4.34 3.68 31.12 0.11 4.45 16 10 H 0.19 -2.50 6.18 -2.39 -0.01 -2.51 16 11 C -0.11 0.96 7.42 31.12 0.23 1.19 16 12 C 0.15 -0.89 4.32 45.52 0.20 -0.69 16 13 H 0.11 -0.38 7.47 -2.39 -0.02 -0.39 16 14 N -0.68 3.76 5.27 -567.61 -2.99 0.77 16 15 C 0.65 1.14 8.06 129.79 1.05 2.19 16 16 O -0.59 -4.47 11.48 19.81 0.23 -4.24 16 17 O -0.37 -0.43 9.94 -55.46 -0.55 -0.98 16 18 C 0.13 0.03 1.13 -10.79 -0.01 0.02 16 19 C -0.18 -0.19 8.37 71.98 0.60 0.42 16 20 C -0.14 0.56 8.85 71.98 0.64 1.20 16 21 C -0.18 -0.12 8.37 71.98 0.60 0.48 16 22 C -0.13 0.76 7.44 31.12 0.23 0.99 16 23 C -0.08 0.31 7.06 22.35 0.16 0.47 16 24 C -0.11 0.38 5.26 -19.84 -0.10 0.27 16 25 C -0.08 0.38 2.02 71.24 0.14 0.53 16 26 O -0.53 1.20 12.72 -148.98 -1.89 -0.69 16 27 Si 0.73 -4.90 29.98 68.60 2.06 -2.85 16 28 C -0.02 0.03 6.22 22.31 0.14 0.17 16 29 Br -0.01 0.01 31.97 -20.37 -0.65 -0.64 16 30 C -0.16 0.18 8.77 22.37 0.20 0.38 16 31 H 0.08 -0.60 7.66 -2.39 -0.02 -0.62 16 32 H 0.12 -0.74 8.14 -2.38 -0.02 -0.76 16 33 H 0.08 -0.48 7.66 -2.39 -0.02 -0.50 16 34 H 0.13 -1.79 8.14 -2.39 -0.02 -1.81 16 35 H 0.12 -1.14 8.10 -2.39 -0.02 -1.16 16 36 H 0.42 -4.88 8.81 -92.71 -0.82 -5.69 16 37 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.07 0.39 5.88 -2.39 -0.01 0.38 16 40 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.07 0.37 5.88 -2.39 -0.01 0.36 16 44 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.12 -0.54 7.54 -2.39 -0.02 -0.56 16 47 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.18 -1.62 4.10 -2.91 -0.01 -1.63 16 49 H 0.13 -0.72 7.19 -2.39 -0.02 -0.74 16 50 H 0.39 -3.06 8.70 -74.05 -0.64 -3.70 16 51 H -0.26 1.25 6.96 99.48 0.69 1.94 16 52 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 53 H 0.18 -0.97 6.30 -2.91 -0.02 -0.99 16 Total: 0.00 -29.48 454.23 -4.30 -33.78 By element: Atomic # 1 Polarization: -19.97 SS G_CDS: -0.44 Total: -20.40 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 5.54 Total: 13.98 kcal Atomic # 7 Polarization: 3.76 SS G_CDS: -2.99 Total: 0.77 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -7.53 Total: -33.62 kcal Atomic # 14 Polarization: -4.90 SS G_CDS: 2.06 Total: -2.85 kcal Atomic # 16 Polarization: 9.27 SS G_CDS: -0.29 Total: 8.98 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.65 Total: -0.64 kcal Total: -29.48 -4.30 -33.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_79904_17701012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.603 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds