Wall clock time and date at job start Tue Mar 9 2021 13:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38709 * 120.02804 * 2 1 4 4 O 1.35896 * 120.05340 * 0.03028 * 3 2 1 5 5 S 1.52203 * 114.00073 * 264.48015 * 4 3 2 6 6 O 1.42103 * 104.27881 * 318.44811 * 5 4 3 7 7 O 1.42099 * 104.27997 * 190.58654 * 5 4 3 8 8 C 1.81402 * 104.44792 * 74.51764 * 5 4 3 9 9 H 1.09006 * 112.85026 * 37.96325 * 8 5 4 10 10 C 1.53776 * 113.61669 * 169.16453 * 8 5 4 11 11 C 1.53778 * 87.08612 * 140.06403 * 10 8 5 12 12 H 1.08997 * 113.61180 * 89.19637 * 11 10 8 13 13 N 1.46498 * 113.61446 * 220.01961 * 11 10 8 14 14 C 1.34782 * 119.99580 * 204.99582 * 13 11 10 15 15 O 1.21506 * 120.00456 * 359.97438 * 14 13 11 16 16 O 1.34643 * 119.99773 * 179.97438 * 14 13 11 17 17 C 1.45191 * 117.00069 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47050 * 60.00292 * 17 16 14 19 19 C 1.52996 * 109.47629 * 300.00665 * 17 16 14 20 20 C 1.53003 * 109.47203 * 179.97438 * 17 16 14 21 21 C 1.53783 * 113.68925 * 266.69704 * 8 5 4 22 22 C 1.38747 * 119.88826 * 180.29735 * 3 2 1 23 23 C 1.50698 * 120.02840 * 179.70445 * 22 3 2 24 24 O 1.42896 * 109.47609 * 75.57123 * 23 22 3 25 25 Si 1.86303 * 109.47107 * 195.57257 * 23 22 3 26 26 C 1.38131 * 119.94386 * 359.47621 * 22 3 2 27 27 C 1.38282 * 120.05152 * 0.50319 * 26 22 3 28 28 C 1.38165 * 120.02584 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47565 * 88.71659 * 1 2 3 30 30 H 1.09001 * 109.47158 * 208.71529 * 1 2 3 31 31 H 1.08997 * 109.46995 * 328.71563 * 1 2 3 32 32 H 1.09003 * 113.61532 * 25.51256 * 10 8 5 33 33 H 1.09000 * 113.61453 * 254.61295 * 10 8 5 34 34 H 0.96997 * 119.99967 * 25.00200 * 13 11 10 35 35 H 1.09001 * 109.47193 * 299.99939 * 18 17 16 36 36 H 1.08999 * 109.47536 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47004 * 59.99721 * 18 17 16 38 38 H 1.08991 * 109.47784 * 180.02562 * 19 17 16 39 39 H 1.09005 * 109.46868 * 299.99972 * 19 17 16 40 40 H 1.09000 * 109.47447 * 59.98975 * 19 17 16 41 41 H 1.08990 * 109.47122 * 300.00249 * 20 17 16 42 42 H 1.08998 * 109.46594 * 60.00834 * 20 17 16 43 43 H 1.08999 * 109.46946 * 180.02562 * 20 17 16 44 44 H 1.09005 * 113.61330 * 105.46005 * 21 8 5 45 45 H 1.09001 * 113.61600 * 334.55802 * 21 8 5 46 46 H 1.09002 * 109.46987 * 315.57135 * 23 22 3 47 47 H 0.96690 * 114.00589 * 185.01328 * 24 23 22 48 48 H 1.48502 * 109.99959 * 178.67907 * 25 23 22 49 49 H 1.48505 * 109.99916 * 299.99536 * 25 23 22 50 50 H 1.08003 * 119.96896 * 180.25326 * 26 22 3 51 51 H 1.08006 * 119.94232 * 179.74907 * 27 26 22 52 52 H 1.07994 * 119.97470 * 359.95120 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2011 1.2009 0.0000 4 8 1.5233 2.3788 0.0006 5 16 1.3298 2.9824 -1.3831 6 8 2.5777 2.7791 -2.0318 7 8 0.8411 4.2923 -1.1289 8 6 0.0412 1.9594 -2.1470 9 1 -0.7342 1.6592 -1.4422 10 6 -0.5107 2.5419 -3.4588 11 6 -0.5216 1.1030 -4.0015 12 1 -1.4514 0.5693 -3.8048 13 7 -0.0902 0.9991 -5.3976 14 6 -0.5027 -0.0367 -6.1550 15 8 -1.2319 -0.8844 -5.6797 16 8 -0.1067 -0.1320 -7.4383 17 6 -0.5891 -1.2740 -8.1940 18 6 -2.1183 -1.2481 -8.2366 19 6 -0.1196 -2.5657 -7.5218 20 6 -0.0387 -1.2113 -9.6202 21 6 0.5933 0.7961 -2.9877 22 6 3.5886 1.1975 -0.0062 23 6 4.3459 2.5004 -0.0130 24 8 4.3009 3.0843 1.2904 25 14 6.1186 2.1858 -0.4917 26 6 4.2752 -0.0010 -0.0015 27 6 3.5808 -1.1969 -0.0010 28 6 2.1984 -1.1962 -0.0005 29 1 -0.3634 0.0230 -1.0274 30 1 -0.3633 -0.9013 0.4937 31 1 -0.3633 0.8782 0.5336 32 1 0.1907 3.1977 -3.9746 33 1 -1.5045 2.9783 -3.3588 34 1 0.4923 1.6756 -5.7769 35 1 -2.5109 -1.2926 -7.2207 36 1 -2.4807 -2.1057 -8.8035 37 1 -2.4530 -0.3279 -8.7155 38 1 -0.4813 -3.4230 -8.0893 39 1 0.9699 -2.5841 -7.4915 40 1 -0.5120 -2.6101 -6.5059 41 1 -0.3737 -0.2912 -10.0988 42 1 1.0508 -1.2296 -9.5902 43 1 -0.4013 -2.0684 -10.1876 44 1 0.4908 -0.1770 -2.5073 45 1 1.5966 0.9746 -3.3746 46 1 3.8907 3.1815 -0.7321 47 1 4.7026 3.9623 1.3422 48 1 6.8686 3.4669 -0.5331 49 1 6.7505 1.2586 0.4811 50 1 5.3552 -0.0041 -0.0022 51 1 4.1194 -2.1330 -0.0014 52 1 1.6584 -2.1315 -0.0002 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_8157786_14316444.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:09 Heat of formation + Delta-G solvation = -141.048663 kcal Electronic energy + Delta-G solvation = -38562.156111 eV Core-core repulsion = 33623.431832 eV Total energy + Delta-G solvation = -4938.724279 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.153 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.52893 -41.89379 -40.39923 -39.35100 -38.51598 -38.04899 -37.85768 -37.35212 -35.39778 -34.45224 -33.93812 -31.97187 -28.55588 -28.32994 -28.27614 -27.29052 -27.00111 -26.75806 -24.14487 -23.55768 -22.22061 -21.79218 -21.34924 -20.77425 -19.95283 -19.19283 -18.98023 -18.69401 -18.46407 -17.74896 -17.25759 -17.18135 -16.92462 -16.88563 -16.16921 -16.06634 -15.91217 -15.50935 -15.35733 -15.25639 -14.81379 -14.75444 -14.45018 -14.29983 -14.23627 -14.01276 -13.96691 -13.67229 -13.62740 -13.52089 -13.46776 -13.31438 -13.29318 -13.12615 -12.99090 -12.87672 -12.83727 -12.82740 -12.75781 -12.54137 -12.46558 -12.25934 -12.03342 -11.94185 -11.83491 -11.39614 -11.35600 -11.08966 -10.49391 -10.23772 -9.93571 -9.84424 -4.98815 -1.14391 0.00816 0.07012 0.94278 1.17499 1.21026 1.50895 1.73275 1.81753 2.32465 2.39645 2.55191 2.94948 3.13511 3.18788 3.26021 3.45803 3.49537 3.63561 3.67061 3.77078 3.82988 3.84862 3.95709 3.97569 4.13633 4.20617 4.23506 4.27955 4.38517 4.45337 4.50906 4.56751 4.62058 4.64796 4.68400 4.71216 4.75057 4.80153 4.82570 4.86123 4.90780 4.92652 4.97299 5.12039 5.14168 5.17036 5.27304 5.29199 5.30752 5.32840 5.39973 5.59808 5.77699 6.37532 6.41851 7.33281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.078 4.078 3 C 0.052 3.948 4 O -0.664 6.664 5 S 2.588 3.412 6 O -0.954 6.954 7 O -0.972 6.972 8 C -0.634 4.634 9 H 0.190 0.810 10 C -0.114 4.114 11 C 0.158 3.842 12 H 0.131 0.869 13 N -0.694 5.694 14 C 0.647 3.353 15 O -0.588 6.588 16 O -0.370 6.370 17 C 0.128 3.872 18 C -0.181 4.181 19 C -0.180 4.180 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.061 4.061 23 C -0.132 4.132 24 O -0.557 6.557 25 Si 0.779 3.221 26 C -0.124 4.124 27 C -0.082 4.082 28 C -0.101 4.101 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.418 0.582 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.393 0.607 48 H -0.286 1.286 49 H -0.269 1.269 50 H 0.150 0.850 51 H 0.171 0.829 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -6.343 -5.038 8.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.080 4.080 3 C 0.010 3.990 4 O -0.623 6.623 5 S 2.688 3.312 6 O -0.952 6.952 7 O -0.970 6.970 8 C -0.744 4.744 9 H 0.207 0.793 10 C -0.154 4.154 11 C 0.053 3.947 12 H 0.148 0.852 13 N -0.353 5.353 14 C 0.401 3.599 15 O -0.478 6.478 16 O -0.284 6.284 17 C 0.092 3.908 18 C -0.238 4.238 19 C -0.237 4.237 20 C -0.196 4.196 21 C -0.168 4.168 22 C -0.064 4.064 23 C -0.239 4.239 24 O -0.366 6.366 25 Si 0.682 3.318 26 C -0.142 4.142 27 C -0.100 4.100 28 C -0.119 4.119 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.256 0.744 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.107 0.893 47 H 0.243 0.757 48 H -0.213 1.213 49 H -0.195 1.195 50 H 0.167 0.833 51 H 0.188 0.812 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.190 -6.617 -4.244 7.864 hybrid contribution -0.514 1.727 0.905 2.017 sum -0.324 -4.890 -3.339 5.930 Atomic orbital electron populations 1.21574 0.88798 1.05582 1.05218 1.20291 0.98082 0.90855 0.98803 1.18007 0.89519 0.80725 1.10709 1.85618 1.76336 1.43549 1.56804 1.05701 0.76759 0.75289 0.73427 1.93554 1.39352 1.86107 1.76170 1.93596 1.83122 1.37371 1.82906 1.32250 1.18748 1.13541 1.09903 0.79254 1.23208 1.05222 0.97146 0.89787 1.22449 0.98924 0.96478 0.76887 0.85162 1.44761 1.53253 1.25830 1.11495 1.18343 0.78651 0.82265 0.80680 1.90902 1.40818 1.42018 1.74096 1.86323 1.70255 1.49559 1.22307 1.22335 0.94479 0.82764 0.91251 1.22485 0.94106 1.03311 1.03891 1.22473 1.01885 0.96649 1.02703 1.21898 1.02267 1.04120 0.91356 1.23625 1.00962 0.97257 0.94935 1.19605 0.91966 0.95377 0.99422 1.25760 1.14534 0.95696 0.87913 1.86532 1.83069 1.37732 1.29298 0.93797 0.70378 0.80465 0.87209 1.21311 1.01360 0.91168 1.00319 1.21747 0.94607 0.98771 0.94902 1.21480 0.94408 0.97653 0.98344 0.87342 0.87798 0.90992 0.87409 0.86239 0.74446 0.91429 0.89625 0.92111 0.89662 0.91861 0.91326 0.91348 0.91156 0.88444 0.86830 0.86704 0.89330 0.75727 1.21277 1.19519 0.83303 0.81201 0.81007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.04 7.85 71.24 0.56 1.60 16 2 C -0.08 0.14 4.69 -19.77 -0.09 0.04 16 3 C 0.05 0.25 4.87 22.50 0.11 0.36 16 4 O -0.66 -4.86 8.66 -61.47 -0.53 -5.39 16 5 S 2.59 12.10 4.95 -56.49 -0.28 11.82 16 6 O -0.95 -5.55 12.39 -118.57 -1.47 -7.02 16 7 O -0.97 -12.51 18.09 -118.57 -2.15 -14.66 16 8 C -0.63 3.21 2.79 31.12 0.09 3.29 16 9 H 0.19 -1.83 5.72 -2.38 -0.01 -1.84 16 10 C -0.11 0.79 7.42 31.12 0.23 1.02 16 11 C 0.16 -0.88 4.24 45.52 0.19 -0.69 16 12 H 0.13 -0.64 7.46 -2.39 -0.02 -0.66 16 13 N -0.69 2.21 5.36 -567.60 -3.04 -0.83 16 14 C 0.65 1.88 8.06 129.79 1.05 2.93 16 15 O -0.59 -4.21 11.48 19.82 0.23 -3.99 16 16 O -0.37 -1.03 9.94 -55.52 -0.55 -1.58 16 17 C 0.13 0.08 1.13 -10.79 -0.01 0.07 16 18 C -0.18 -0.17 8.37 71.98 0.60 0.43 16 19 C -0.18 -0.08 8.37 71.98 0.60 0.52 16 20 C -0.14 0.50 8.85 71.98 0.64 1.13 16 21 C -0.13 0.81 6.28 31.12 0.20 1.00 16 22 C -0.06 -0.36 4.63 -19.77 -0.09 -0.45 16 23 C -0.13 -0.98 2.12 71.24 0.15 -0.83 16 24 O -0.56 -5.30 12.79 -148.98 -1.91 -7.21 16 25 Si 0.78 1.80 30.31 68.60 2.08 3.88 16 26 C -0.12 -0.05 8.66 22.25 0.19 0.14 16 27 C -0.08 0.40 10.04 22.28 0.22 0.62 16 28 C -0.10 0.57 9.69 22.25 0.22 0.78 16 29 H 0.11 -1.14 3.68 -2.39 -0.01 -1.15 16 30 H 0.10 -1.03 8.08 -2.39 -0.02 -1.05 16 31 H 0.07 -0.35 7.36 -2.39 -0.02 -0.37 16 32 H 0.11 -0.92 8.08 -2.39 -0.02 -0.94 16 33 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 34 H 0.42 -2.88 8.84 -92.71 -0.82 -3.70 16 35 H 0.07 0.37 5.88 -2.39 -0.01 0.36 16 36 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.07 0.33 5.88 -2.39 -0.01 0.32 16 41 H 0.07 -0.24 8.14 -2.39 -0.02 -0.25 16 42 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.11 -0.98 5.94 -2.38 -0.01 -0.99 16 45 H 0.11 -0.65 7.31 -2.39 -0.02 -0.67 16 46 H 0.09 0.75 4.70 -2.39 -0.01 0.74 16 47 H 0.39 0.69 8.86 -74.06 -0.66 0.03 16 48 H -0.29 -1.84 7.11 99.48 0.71 -1.13 16 49 H -0.27 -1.26 6.72 99.48 0.67 -0.59 16 50 H 0.15 -0.33 4.91 -2.91 -0.01 -0.34 16 51 H 0.17 -1.91 8.06 -2.91 -0.02 -1.94 16 52 H 0.17 -2.06 8.06 -2.91 -0.02 -2.08 16 Total: 0.00 -28.52 409.80 -3.25 -31.78 By element: Atomic # 1 Polarization: -18.31 SS G_CDS: -0.48 Total: -18.79 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 4.85 Total: 11.98 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -3.04 Total: -0.83 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -6.38 Total: -39.84 kcal Atomic # 14 Polarization: 1.80 SS G_CDS: 2.08 Total: 3.88 kcal Atomic # 16 Polarization: 12.10 SS G_CDS: -0.28 Total: 11.82 kcal Total: -28.52 -3.25 -31.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_8157786_14316444.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.273 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds