Wall clock time and date at job start Tue Mar 9 2021 13:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38710 * 120.02985 * 2 1 4 4 O 1.35909 * 120.05294 * 0.04678 * 3 2 1 5 5 S 1.52197 * 113.99730 * 264.37773 * 4 3 2 6 6 O 1.42104 * 104.27315 * 202.28391 * 5 4 3 7 7 O 1.42098 * 104.27863 * 330.14101 * 5 4 3 8 8 C 1.81397 * 104.44909 * 86.21608 * 5 4 3 9 9 H 1.08999 * 112.84938 * 303.07810 * 8 5 4 10 10 C 1.53783 * 113.61692 * 74.38599 * 8 5 4 11 11 C 1.53783 * 87.08136 * 139.97735 * 10 8 5 12 12 H 1.08990 * 113.61453 * 220.01625 * 11 10 8 13 13 N 1.46500 * 113.61066 * 89.11351 * 11 10 8 14 14 C 1.34785 * 119.99533 * 107.49994 * 13 11 10 15 15 O 1.21502 * 119.99956 * 0.02562 * 14 13 11 16 16 O 1.34638 * 119.99566 * 179.97438 * 14 13 11 17 17 C 1.45199 * 116.99875 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47060 * 59.99975 * 17 16 14 19 19 C 1.52997 * 109.47198 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.47012 * 299.99995 * 17 16 14 21 21 C 1.53778 * 87.08212 * 334.57027 * 11 10 8 22 22 C 1.38755 * 119.89229 * 180.02562 * 3 2 1 23 23 C 1.50699 * 120.02632 * 179.97438 * 22 3 2 24 24 O 1.42895 * 109.47166 * 260.32041 * 23 22 3 25 25 Si 1.86298 * 109.46883 * 140.32493 * 23 22 3 26 26 C 1.38122 * 119.94149 * 0.02562 * 22 3 2 27 27 C 1.38291 * 120.05609 * 0.25555 * 26 22 3 28 28 C 1.38164 * 120.02931 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47670 * 92.59944 * 1 2 3 30 30 H 1.09008 * 109.47105 * 212.59780 * 1 2 3 31 31 H 1.08997 * 109.47275 * 332.59722 * 1 2 3 32 32 H 1.08996 * 113.61302 * 254.52806 * 10 8 5 33 33 H 1.09000 * 113.60983 * 25.42974 * 10 8 5 34 34 H 0.96997 * 120.00514 * 287.50772 * 13 11 10 35 35 H 1.09005 * 109.47258 * 60.00608 * 18 17 16 36 36 H 1.09004 * 109.47021 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47382 * 300.00246 * 18 17 16 38 38 H 1.09004 * 109.47263 * 60.00050 * 19 17 16 39 39 H 1.09008 * 109.47422 * 179.97438 * 19 17 16 40 40 H 1.08997 * 109.47441 * 300.00173 * 19 17 16 41 41 H 1.08998 * 109.46862 * 60.00102 * 20 17 16 42 42 H 1.09004 * 109.47312 * 179.97438 * 20 17 16 43 43 H 1.09000 * 109.47503 * 300.00326 * 20 17 16 44 44 H 1.09005 * 113.60767 * 270.88335 * 21 11 10 45 45 H 1.08998 * 113.69398 * 139.98980 * 21 11 10 46 46 H 1.08994 * 109.47190 * 20.32742 * 23 22 3 47 47 H 0.96701 * 113.99903 * 300.00811 * 24 23 22 48 48 H 1.48504 * 110.00199 * 58.67732 * 25 23 22 49 49 H 1.48499 * 110.00206 * 179.97438 * 25 23 22 50 50 H 1.07995 * 119.97149 * 179.97438 * 26 22 3 51 51 H 1.08000 * 119.94364 * 179.74222 * 27 26 22 52 52 H 1.07998 * 119.97142 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2011 1.2009 0.0000 4 8 1.5233 2.3789 0.0010 5 16 1.3317 2.9839 -1.3824 6 8 1.1138 4.3659 -1.1333 7 8 2.4641 2.5417 -2.1182 8 6 -0.1805 2.2044 -2.0118 9 1 -0.1205 1.1162 -2.0281 10 6 -1.4669 2.7426 -1.3633 11 6 -2.1058 2.6755 -2.7605 12 1 -2.7513 3.5240 -2.9867 13 7 -2.7343 1.3858 -3.0569 14 6 -4.0778 1.2825 -3.0887 15 8 -4.7675 2.2590 -2.8720 16 8 -4.6555 0.0973 -3.3616 17 6 -6.1069 0.0600 -3.3796 18 6 -6.6287 1.0267 -4.4446 19 6 -6.5766 -1.3594 -3.7044 20 6 -6.6447 0.4734 -2.0082 21 6 -0.6844 2.8135 -3.3309 22 6 3.5887 1.1976 -0.0005 23 6 4.3459 2.5005 -0.0011 24 8 4.7806 2.7982 -1.3294 25 14 5.8272 2.3583 1.1197 26 6 4.2752 -0.0010 -0.0016 27 6 3.5808 -1.1969 -0.0075 28 6 2.1984 -1.1962 -0.0005 29 1 -0.3634 -0.0466 -1.0266 30 1 -0.3634 -0.8658 0.5537 31 1 -0.3634 0.9123 0.4730 32 1 -1.9143 2.0556 -0.6451 33 1 -1.3692 3.7569 -0.9761 34 1 -2.1837 0.6063 -3.2302 35 1 -6.2456 0.7321 -5.4217 36 1 -7.7183 0.9990 -4.4578 37 1 -6.2940 2.0378 -4.2128 38 1 -6.2049 -2.0477 -2.9454 39 1 -7.6662 -1.3875 -3.7175 40 1 -6.1935 -1.6543 -4.6812 41 1 -6.3100 1.4845 -1.7764 42 1 -7.7343 0.4459 -2.0218 43 1 -6.2729 -0.2152 -1.2494 44 1 -0.3729 3.8472 -3.4816 45 1 -0.4987 2.1842 -4.2013 46 1 3.6955 3.2989 0.3559 47 1 5.3643 2.1286 -1.7116 48 1 6.7060 1.2521 0.6622 49 1 6.5829 3.6366 1.1275 50 1 5.3552 -0.0041 -0.0024 51 1 4.1195 -2.1330 -0.0125 52 1 1.6584 -2.1315 -0.0005 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_8157786_17701012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:13 Heat of formation + Delta-G solvation = -143.947966 kcal Electronic energy + Delta-G solvation = -38322.864770 eV Core-core repulsion = 33384.014768 eV Total energy + Delta-G solvation = -4938.850002 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.153 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.47568 -42.00548 -40.48508 -39.38081 -38.37634 -37.96856 -37.84944 -37.18870 -35.39351 -34.23564 -33.88550 -31.93434 -28.52163 -28.37492 -28.30764 -27.28272 -27.05462 -26.89670 -24.19122 -23.86480 -22.24988 -21.73959 -21.30109 -20.82606 -19.73137 -19.31388 -18.80733 -18.76002 -18.14172 -17.67403 -17.31154 -17.17095 -16.87566 -16.60425 -16.18320 -15.88646 -15.73643 -15.61228 -15.52309 -15.36822 -14.77092 -14.66704 -14.61723 -14.38079 -14.19645 -14.10233 -14.02291 -13.93081 -13.72329 -13.63513 -13.36205 -13.35303 -13.19121 -13.15503 -13.02141 -12.93245 -12.87774 -12.83561 -12.55905 -12.49303 -12.35996 -12.13632 -12.06296 -11.98943 -11.82986 -11.41970 -11.34096 -11.16159 -10.65142 -10.35112 -9.86973 -9.79089 -4.98395 -1.11022 0.05770 0.09247 1.00960 1.05272 1.16425 1.49361 1.66881 1.87823 2.42523 2.53500 2.69046 2.86832 2.99876 3.12064 3.27714 3.41428 3.49887 3.59782 3.61002 3.72921 3.78663 3.85374 3.93390 3.94492 4.10559 4.21594 4.24406 4.26730 4.36552 4.42369 4.44123 4.58369 4.59502 4.60782 4.61874 4.70512 4.71618 4.76238 4.77550 4.81435 4.87400 4.88087 4.93129 5.10545 5.12995 5.16324 5.24325 5.26667 5.27937 5.34311 5.34711 5.54438 5.80097 6.30999 6.52664 7.27399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C 0.055 3.945 4 O -0.667 6.667 5 S 2.580 3.420 6 O -0.972 6.972 7 O -0.944 6.944 8 C -0.634 4.634 9 H 0.185 0.815 10 C -0.125 4.125 11 C 0.154 3.846 12 H 0.110 0.890 13 N -0.681 5.681 14 C 0.649 3.351 15 O -0.589 6.589 16 O -0.365 6.365 17 C 0.129 3.871 18 C -0.182 4.182 19 C -0.138 4.138 20 C -0.181 4.181 21 C -0.113 4.113 22 C -0.096 4.096 23 C -0.115 4.115 24 O -0.523 6.523 25 Si 0.779 3.221 26 C -0.123 4.123 27 C -0.084 4.084 28 C -0.102 4.102 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.419 0.581 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.113 0.887 45 H 0.121 0.879 46 H 0.087 0.913 47 H 0.384 0.616 48 H -0.243 1.243 49 H -0.299 1.299 50 H 0.151 0.849 51 H 0.167 0.833 52 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 -11.282 1.128 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C 0.014 3.986 4 O -0.627 6.627 5 S 2.680 3.320 6 O -0.970 6.970 7 O -0.943 6.943 8 C -0.744 4.744 9 H 0.202 0.798 10 C -0.165 4.165 11 C 0.047 3.953 12 H 0.128 0.872 13 N -0.340 5.340 14 C 0.402 3.598 15 O -0.479 6.479 16 O -0.280 6.280 17 C 0.093 3.907 18 C -0.239 4.239 19 C -0.195 4.195 20 C -0.238 4.238 21 C -0.152 4.152 22 C -0.099 4.099 23 C -0.222 4.222 24 O -0.330 6.330 25 Si 0.679 3.321 26 C -0.141 4.141 27 C -0.103 4.103 28 C -0.120 4.120 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.257 0.743 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.131 0.869 45 H 0.139 0.861 46 H 0.105 0.895 47 H 0.233 0.767 48 H -0.168 1.168 49 H -0.227 1.227 50 H 0.169 0.831 51 H 0.184 0.816 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.901 -9.740 1.572 9.907 hybrid contribution -0.125 0.096 -1.341 1.351 sum -1.026 -9.644 0.230 9.701 Atomic orbital electron populations 1.21385 0.88820 1.05659 1.04280 1.20310 0.98000 0.91013 0.99312 1.17930 0.89753 0.80732 1.10222 1.85648 1.76336 1.43329 1.57338 1.05895 0.77259 0.74959 0.73892 1.93587 1.87656 1.32505 1.83227 1.93708 1.46657 1.81527 1.72360 1.32502 1.17040 1.15163 1.09673 0.79764 1.23328 0.90983 1.03669 0.98483 1.21549 0.93332 0.85603 0.94774 0.87165 1.44197 1.02681 1.13109 1.74041 1.18255 0.83667 0.81896 0.75957 1.90931 1.62805 1.38848 1.55356 1.86309 1.25738 1.32403 1.83543 1.22349 0.73474 0.98388 0.96515 1.22492 1.02965 1.00328 0.98136 1.21894 1.02625 0.91854 1.03123 1.22484 1.02860 1.02916 0.95559 1.23143 0.93995 1.03417 0.94693 1.20459 0.92549 0.97117 0.99744 1.25481 1.08410 0.96044 0.92306 1.86745 1.69038 1.50003 1.27254 0.93870 0.73611 0.78417 0.86219 1.21295 1.01530 0.90917 1.00309 1.21731 0.94565 0.98901 0.95055 1.21452 0.94527 0.97574 0.98399 0.88551 0.87613 0.90785 0.87392 0.87225 0.74295 0.91919 0.89583 0.91722 0.90952 0.88464 0.91182 0.91703 0.89640 0.91652 0.86912 0.86087 0.89462 0.76701 1.16760 1.22703 0.83121 0.81555 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.16 8.19 71.24 0.58 1.74 16 2 C -0.08 0.27 5.88 -19.77 -0.12 0.15 16 3 C 0.06 0.18 4.77 22.51 0.11 0.29 16 4 O -0.67 -4.00 8.04 -61.62 -0.50 -4.50 16 5 S 2.58 17.12 4.87 -56.49 -0.28 16.84 16 6 O -0.97 -14.07 17.50 -118.57 -2.08 -16.14 16 7 O -0.94 -9.99 13.06 -115.27 -1.50 -11.49 16 8 C -0.63 2.16 3.16 31.12 0.10 2.25 16 9 H 0.19 -1.69 4.91 -2.39 -0.01 -1.70 16 10 C -0.13 0.36 7.20 31.12 0.22 0.58 16 11 C 0.15 -0.40 4.32 45.52 0.20 -0.20 16 12 H 0.11 0.04 7.46 -2.39 -0.02 0.02 16 13 N -0.68 2.10 5.27 -567.61 -2.99 -0.89 16 14 C 0.65 2.28 8.06 129.79 1.05 3.32 16 15 O -0.59 -5.55 11.48 19.83 0.23 -5.33 16 16 O -0.37 -0.83 9.94 -55.47 -0.55 -1.38 16 17 C 0.13 0.08 1.13 -10.80 -0.01 0.07 16 18 C -0.18 -0.30 8.37 71.98 0.60 0.31 16 19 C -0.14 0.58 8.85 71.98 0.64 1.21 16 20 C -0.18 -0.19 8.37 71.98 0.60 0.41 16 21 C -0.11 0.52 7.42 31.12 0.23 0.75 16 22 C -0.10 -0.31 4.17 -19.77 -0.08 -0.39 16 23 C -0.12 -0.72 2.02 71.24 0.14 -0.58 16 24 O -0.52 -4.98 10.64 -127.48 -1.36 -6.33 16 25 Si 0.78 0.35 31.21 68.60 2.14 2.49 16 26 C -0.12 0.32 8.66 22.25 0.19 0.52 16 27 C -0.08 0.57 10.04 22.28 0.22 0.80 16 28 C -0.10 0.73 9.71 22.25 0.22 0.94 16 29 H 0.10 -1.14 5.59 -2.39 -0.01 -1.15 16 30 H 0.11 -1.21 8.10 -2.38 -0.02 -1.23 16 31 H 0.07 -0.46 6.51 -2.39 -0.02 -0.47 16 32 H 0.11 -0.58 7.52 -2.39 -0.02 -0.60 16 33 H 0.11 -0.11 7.61 -2.39 -0.02 -0.13 16 34 H 0.42 -3.55 8.81 -92.71 -0.82 -4.37 16 35 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 36 H 0.09 -0.12 8.14 -2.38 -0.02 -0.14 16 37 H 0.06 0.45 5.88 -2.39 -0.01 0.43 16 38 H 0.07 -0.35 8.14 -2.38 -0.02 -0.37 16 39 H 0.10 -0.67 8.14 -2.38 -0.02 -0.69 16 40 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.06 0.41 5.88 -2.39 -0.01 0.40 16 42 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 43 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.11 -0.47 8.10 -2.38 -0.02 -0.49 16 45 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 46 H 0.09 0.83 7.00 -2.39 -0.02 0.81 16 47 H 0.38 0.75 8.70 -74.06 -0.64 0.10 16 48 H -0.24 0.25 6.37 99.48 0.63 0.88 16 49 H -0.30 -2.49 7.11 99.48 0.71 -1.79 16 50 H 0.15 -0.89 5.88 -2.91 -0.02 -0.91 16 51 H 0.17 -2.12 8.06 -2.91 -0.02 -2.15 16 52 H 0.17 -2.27 8.06 -2.91 -0.02 -2.30 16 Total: 0.00 -29.40 415.01 -2.50 -31.91 By element: Atomic # 1 Polarization: -16.84 SS G_CDS: -0.52 Total: -17.36 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 4.89 Total: 12.18 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -2.99 Total: -0.89 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -5.76 Total: -45.17 kcal Atomic # 14 Polarization: 0.35 SS G_CDS: 2.14 Total: 2.49 kcal Atomic # 16 Polarization: 17.12 SS G_CDS: -0.28 Total: 16.84 kcal Total: -29.40 -2.50 -31.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_8157786_17701012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.041 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds