Wall clock time and date at job start Tue Mar 9 2021 13:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35955 * 116.99895 * 2 1 4 4 C 1.38909 * 120.06364 * 180.02562 * 3 2 1 5 5 F 1.35098 * 120.04688 * 359.97438 * 4 3 2 6 6 C 1.38333 * 119.90259 * 179.97438 * 4 3 2 7 7 C 1.38256 * 120.03238 * 359.96809 * 6 4 3 8 8 C 1.50697 * 119.93555 * 180.02562 * 7 6 4 9 9 H 1.09002 * 112.85171 * 11.19682 * 8 7 6 10 10 C 1.53782 * 113.61209 * 142.50466 * 8 7 6 11 11 C 1.53789 * 87.07918 * 139.97838 * 10 8 7 12 12 H 1.08992 * 113.61030 * 220.01354 * 11 10 8 13 13 N 1.46507 * 113.68750 * 89.12764 * 11 10 8 14 14 S 1.65601 * 119.99895 * 117.04757 * 13 11 10 15 15 O 1.42097 * 106.40029 * 178.82049 * 14 13 11 16 16 O 1.42099 * 106.40026 * 311.74542 * 14 13 11 17 17 C 1.76204 * 107.21608 * 65.28450 * 14 13 11 18 18 C 1.38206 * 119.99960 * 64.57782 * 17 14 13 19 19 C 1.50697 * 120.00464 * 359.97438 * 18 17 14 20 20 O 1.42909 * 109.46624 * 284.73702 * 19 18 17 21 21 Si 1.86301 * 109.47430 * 164.73828 * 19 18 17 22 22 C 1.38263 * 119.99972 * 180.02562 * 18 17 14 23 23 C 1.38216 * 119.99397 * 359.97438 * 22 18 17 24 24 C 1.38249 * 120.00533 * 359.97438 * 23 22 18 25 25 C 1.38214 * 120.00067 * 359.81515 * 24 23 22 26 26 C 1.53773 * 87.08008 * 334.56903 * 11 10 8 27 27 C 1.38259 * 120.12421 * 0.28584 * 7 6 4 28 28 C 1.38184 * 120.09679 * 359.48428 * 27 7 6 29 29 H 1.09000 * 109.46898 * 60.00592 * 1 2 3 30 30 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47429 * 300.00261 * 1 2 3 32 32 H 1.07997 * 119.98071 * 179.97438 * 6 4 3 33 33 H 1.08999 * 113.61929 * 25.43162 * 10 8 7 34 34 H 1.08998 * 113.61306 * 254.52242 * 10 8 7 35 35 H 0.96999 * 119.99749 * 297.04544 * 13 11 10 36 36 H 1.08996 * 109.47182 * 44.72867 * 19 18 17 37 37 H 0.96700 * 113.99445 * 180.02562 * 20 19 18 38 38 H 1.48506 * 109.99631 * 298.67642 * 21 19 18 39 39 H 1.48491 * 110.00027 * 59.99633 * 21 19 18 40 40 H 1.07999 * 120.00109 * 179.97438 * 22 18 17 41 41 H 1.08001 * 119.99465 * 179.97438 * 23 22 18 42 42 H 1.07999 * 120.00141 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00149 * 180.23418 * 25 24 23 44 44 H 1.09001 * 113.61815 * 139.98409 * 26 11 10 45 45 H 1.09008 * 113.61319 * 270.79572 * 26 11 10 46 46 H 1.08002 * 119.94988 * 179.72560 * 27 7 6 47 47 H 1.08000 * 120.01799 * 180.28335 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4333 1.2856 -0.0005 5 9 4.1713 0.1541 -0.0005 6 6 4.0578 2.5200 -0.0011 7 6 3.3022 3.6778 -0.0017 8 6 3.9848 5.0213 -0.0029 9 1 5.0550 4.9522 -0.1982 10 6 3.2670 6.0762 -0.8612 11 6 3.5892 7.0871 0.2521 12 1 2.7762 7.7829 0.4586 13 7 4.8817 7.7561 0.0836 14 16 4.9425 9.3960 -0.1386 15 8 6.3183 9.7364 -0.2401 16 8 3.9900 9.6996 -1.1484 17 6 4.3526 10.1452 1.3432 18 6 5.0552 9.9899 2.5231 19 6 6.3255 9.1794 2.5427 20 8 6.0038 7.7883 2.4825 21 14 7.2634 9.5325 4.1132 22 6 4.5921 10.5773 3.6859 23 6 3.4267 11.3203 3.6680 24 6 2.7245 11.4765 2.4875 25 6 3.1898 10.8929 1.3242 26 6 3.6361 5.8905 1.2168 27 6 1.9216 3.6053 0.0041 28 6 1.2922 2.3751 -0.0002 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 5.1362 2.5792 -0.0011 33 1 2.2005 5.8872 -0.9840 34 1 3.7714 6.2891 -1.8037 35 1 5.7018 7.2384 0.1022 36 1 6.9408 9.4474 1.6839 37 1 6.7754 7.2055 2.4917 38 1 7.6315 10.9700 4.1726 39 1 6.4352 9.1712 5.2915 40 1 5.1409 10.4557 4.6081 41 1 3.0647 11.7788 4.5764 42 1 1.8137 12.0567 2.4736 43 1 2.6432 11.0180 0.4011 44 1 4.4385 5.9534 1.9519 45 1 2.6708 5.6515 1.6633 46 1 1.3341 4.5115 0.0080 47 1 0.2136 2.3200 -0.0002 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_9824368_2726874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:10 Heat of formation + Delta-G solvation = -89.940685 kcal Electronic energy + Delta-G solvation = -35206.991978 eV Core-core repulsion = 30364.791133 eV Total energy + Delta-G solvation = -4842.200846 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.113 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.83987 -41.36528 -40.70092 -40.25605 -38.56262 -38.08721 -37.39469 -37.03504 -33.92383 -32.99875 -32.50240 -31.78838 -30.92569 -28.32072 -26.93964 -26.46218 -25.68213 -24.51530 -23.81235 -22.81640 -22.58247 -20.87141 -20.20685 -19.43110 -19.13024 -18.50406 -18.35552 -17.93993 -17.52713 -17.38050 -17.16145 -17.01503 -16.61505 -16.26467 -16.06655 -15.99072 -15.85678 -15.67747 -15.23418 -15.20807 -15.01875 -14.84827 -14.30700 -14.12492 -13.96672 -13.85796 -13.68175 -13.57728 -13.39615 -13.33671 -13.27344 -13.15457 -13.10237 -13.03110 -12.77172 -12.32985 -12.26064 -12.16209 -12.10797 -11.74244 -11.62430 -11.35297 -11.12436 -10.59065 -10.35005 -10.22504 -10.13493 -9.91886 -9.06761 -4.97672 -0.68338 -0.35692 0.01937 0.13073 0.22413 1.22744 1.61957 1.90309 1.91968 2.21092 2.27018 2.52158 2.65798 3.17060 3.21949 3.32512 3.60711 3.64916 3.65637 3.75782 3.82622 3.84512 3.92305 4.05627 4.08219 4.11027 4.17238 4.24523 4.29374 4.30943 4.34557 4.36895 4.42414 4.49643 4.56075 4.69009 4.72305 4.83543 4.90949 4.93716 4.96035 4.97979 5.05878 5.10045 5.17234 5.21141 5.23970 5.36619 5.51377 5.64197 5.69067 5.69622 6.24936 6.28897 6.86861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.071 3.929 4 C 0.034 3.966 5 F -0.153 7.153 6 C -0.113 4.113 7 C -0.075 4.075 8 C -0.064 4.064 9 H 0.113 0.887 10 C -0.148 4.148 11 C 0.131 3.869 12 H 0.097 0.903 13 N -1.064 6.064 14 S 2.714 3.286 15 O -0.983 6.983 16 O -0.987 6.987 17 C -0.669 4.669 18 C 0.021 3.979 19 C -0.133 4.133 20 O -0.536 6.536 21 Si 0.783 3.217 22 C -0.165 4.165 23 C -0.060 4.060 24 C -0.137 4.137 25 C -0.034 4.034 26 C -0.123 4.123 27 C -0.083 4.083 28 C -0.179 4.179 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.431 0.569 36 H 0.108 0.892 37 H 0.406 0.594 38 H -0.301 1.301 39 H -0.277 1.277 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.153 0.847 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.158 0.842 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 0.261 4.081 4.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.025 3.975 4 C 0.014 3.986 5 F -0.132 7.132 6 C -0.131 4.131 7 C -0.075 4.075 8 C -0.082 4.082 9 H 0.131 0.869 10 C -0.187 4.187 11 C 0.023 3.977 12 H 0.115 0.885 13 N -0.826 5.826 14 S 2.803 3.197 15 O -0.973 6.973 16 O -0.976 6.976 17 C -0.756 4.756 18 C 0.019 3.981 19 C -0.243 4.243 20 O -0.346 6.346 21 Si 0.689 3.311 22 C -0.184 4.184 23 C -0.078 4.078 24 C -0.155 4.155 25 C -0.054 4.054 26 C -0.162 4.162 27 C -0.101 4.101 28 C -0.197 4.197 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.269 0.731 36 H 0.125 0.875 37 H 0.258 0.742 38 H -0.228 1.228 39 H -0.204 1.204 40 H 0.148 0.852 41 H 0.175 0.825 42 H 0.179 0.821 43 H 0.171 0.829 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.175 0.825 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.805 1.233 4.049 5.077 hybrid contribution -0.378 -0.175 0.353 0.546 sum -3.183 1.058 4.401 5.534 Atomic orbital electron populations 1.23384 0.75877 1.05647 1.02669 1.86105 1.23965 1.26549 1.88887 1.19325 0.91016 0.86453 1.00671 1.17459 0.86603 0.83304 1.11195 1.91449 1.76845 1.50207 1.94657 1.21126 1.01873 0.89227 1.00916 1.19680 0.93368 0.94391 1.00096 1.21567 1.00272 0.88464 0.97938 0.86882 1.23677 1.02249 0.94760 0.98062 1.21587 0.83959 0.94655 0.97543 0.88473 1.54721 1.14596 1.23887 1.89427 1.01105 0.72437 0.73003 0.73111 1.93523 1.33814 1.83252 1.86717 1.93559 1.64378 1.84287 1.55419 1.30770 1.08001 1.17351 1.19457 1.19171 0.93239 0.93604 0.92071 1.25325 0.97556 0.86230 1.15145 1.86465 1.38075 1.12532 1.97515 0.93914 0.83411 0.80645 0.73168 1.21386 0.98557 1.00823 0.97602 1.21801 0.92680 0.93615 0.99713 1.21700 1.01502 1.00335 0.91982 1.21333 0.92266 0.91438 1.00323 1.23398 1.04030 0.92563 0.96212 1.21223 0.94250 0.97791 0.96867 1.21417 1.01362 0.90907 1.06017 0.91189 0.86833 0.91119 0.82751 0.87691 0.90851 0.73071 0.87458 0.74164 1.22834 1.20367 0.85211 0.82454 0.82054 0.82945 0.88469 0.88632 0.82468 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -2.29 10.36 -93.04 -0.96 -3.25 16 3 C 0.07 0.38 6.69 22.53 0.15 0.54 16 4 C 0.03 0.24 7.31 22.45 0.16 0.40 16 5 F -0.15 -1.78 17.11 44.97 0.77 -1.01 16 6 C -0.11 -0.10 9.68 22.30 0.22 0.11 16 7 C -0.07 0.21 5.29 -19.86 -0.11 0.11 16 8 C -0.06 0.44 3.81 -11.01 -0.04 0.40 16 9 H 0.11 -1.02 8.07 -2.39 -0.02 -1.04 16 10 C -0.15 0.84 7.25 31.12 0.23 1.06 16 11 C 0.13 -0.70 4.43 45.52 0.20 -0.50 16 12 H 0.10 -0.50 8.05 -2.39 -0.02 -0.52 16 13 N -1.06 4.43 4.01 -167.19 -0.67 3.76 16 14 S 2.71 9.25 5.02 -56.49 -0.28 8.96 16 15 O -0.98 -7.69 15.52 -128.00 -1.99 -9.67 16 16 O -0.99 -8.88 16.72 -128.00 -2.14 -11.02 16 17 C -0.67 -2.14 5.88 22.27 0.13 -2.01 16 18 C 0.02 0.06 5.28 -19.87 -0.10 -0.05 16 19 C -0.13 0.28 2.02 71.23 0.14 0.42 16 20 O -0.54 4.27 9.47 -148.98 -1.41 2.86 16 21 Si 0.78 -2.61 30.21 68.60 2.07 -0.54 16 22 C -0.17 -0.38 8.66 22.27 0.19 -0.18 16 23 C -0.06 0.05 10.05 22.27 0.22 0.27 16 24 C -0.14 0.17 10.05 22.27 0.22 0.39 16 25 C -0.03 -0.06 9.55 22.27 0.21 0.15 16 26 C -0.12 0.94 7.33 31.12 0.23 1.17 16 27 C -0.08 0.30 8.59 22.26 0.19 0.49 16 28 C -0.18 0.16 9.04 22.36 0.20 0.37 16 29 H 0.07 -0.39 7.66 -2.39 -0.02 -0.40 16 30 H 0.11 -0.62 8.14 -2.38 -0.02 -0.64 16 31 H 0.07 -0.40 7.66 -2.39 -0.02 -0.42 16 32 H 0.15 -0.43 8.05 -2.91 -0.02 -0.45 16 33 H 0.10 -0.79 6.32 -2.39 -0.02 -0.80 16 34 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.43 -3.77 8.26 -96.74 -0.80 -4.57 16 36 H 0.11 -0.13 5.39 -2.39 -0.01 -0.14 16 37 H 0.41 -7.15 8.74 -74.06 -0.65 -7.80 16 38 H -0.30 -1.29 7.11 99.48 0.71 -0.58 16 39 H -0.28 -0.30 6.74 99.48 0.67 0.37 16 40 H 0.13 0.16 4.90 -2.91 -0.01 0.14 16 41 H 0.16 -0.97 8.06 -2.91 -0.02 -1.00 16 42 H 0.16 -1.10 8.06 -2.91 -0.02 -1.12 16 43 H 0.15 -0.02 7.34 -2.91 -0.02 -0.04 16 44 H 0.10 -0.79 7.08 -2.39 -0.02 -0.81 16 45 H 0.10 -0.76 7.72 -2.38 -0.02 -0.78 16 46 H 0.16 -1.37 6.67 -2.91 -0.02 -1.39 16 47 H 0.16 -0.92 6.30 -2.91 -0.02 -0.93 16 Total: 0.00 -27.49 393.58 -1.44 -28.92 By element: Atomic # 1 Polarization: -22.82 SS G_CDS: -0.39 Total: -23.21 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 3.57 Total: 4.20 kcal Atomic # 7 Polarization: 4.43 SS G_CDS: -0.67 Total: 3.76 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -6.50 Total: -21.08 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.77 Total: -1.01 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.07 Total: -0.54 kcal Atomic # 16 Polarization: 9.25 SS G_CDS: -0.28 Total: 8.96 kcal Total: -27.49 -1.44 -28.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_9824368_2726874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.018 kcal (2) G-P(sol) polarization free energy of solvation -27.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds