Wall clock time and date at job start Tue Mar 9 2021 13:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35919 * 117.00178 * 179.97438 * 8 7 6 10 10 C 1.38675 * 120.05755 * 359.71873 * 9 8 7 11 11 C 1.38186 * 119.95183 * 179.72086 * 10 9 8 12 12 C 1.38237 * 120.07366 * 0.53928 * 11 10 9 13 13 C 1.50705 * 119.94366 * 179.74444 * 12 11 10 14 14 O 1.42894 * 109.47189 * 120.01890 * 13 12 11 15 15 Si 1.86306 * 109.46830 * 0.02562 * 13 12 11 16 16 H 1.48497 * 109.47077 * 60.00399 * 15 13 12 17 17 H 1.48498 * 109.46722 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47383 * 300.00151 * 15 13 12 19 19 C 1.38281 * 120.11636 * 359.76049 * 12 11 10 20 20 C 1.38191 * 120.04872 * 359.96003 * 19 12 11 21 21 Br 1.89093 * 120.04076 * 179.97438 * 20 19 12 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08004 * 120.02436 * 0.02562 * 10 9 8 37 37 H 1.08006 * 119.96746 * 180.27593 * 11 10 9 38 38 H 1.08999 * 109.46812 * 240.02144 * 13 12 11 39 39 H 0.96697 * 114.00199 * 299.99693 * 14 13 12 40 40 H 1.07999 * 119.97959 * 179.97438 * 19 12 11 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8105 -4.6707 -1.5060 10 6 5.2006 -5.1933 -2.6365 11 6 5.7221 -6.3200 -3.2433 12 6 6.8444 -6.9330 -2.7182 13 6 7.4072 -8.1649 -3.3791 14 8 8.7514 -7.9116 -3.7926 15 14 6.3719 -8.6002 -4.8655 16 1 6.3890 -7.4702 -5.8288 17 1 6.9261 -9.8145 -5.5163 18 1 4.9750 -8.8634 -4.4359 19 6 7.4512 -6.4180 -1.5874 20 6 6.9373 -5.2882 -0.9800 21 35 7.7669 -4.5846 0.5667 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3216 -4.7172 -3.0453 37 1 5.2499 -6.7246 -4.1264 38 1 7.3948 -8.9943 -2.6719 39 1 8.8382 -7.1844 -4.4239 40 1 8.3277 -6.8989 -1.1788 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_10154_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:15 Heat of formation + Delta-G solvation = -95.166375 kcal Electronic energy + Delta-G solvation = -21547.164701 eV Core-core repulsion = 18275.548111 eV Total energy + Delta-G solvation = -3271.616590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 358.051 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44732 -39.48375 -37.54639 -36.56056 -33.51496 -31.84303 -30.78760 -30.22607 -29.29431 -28.56607 -27.68728 -26.14497 -24.52738 -23.34020 -22.34061 -20.82343 -19.40692 -18.41498 -17.36674 -17.10005 -16.57149 -16.23263 -15.95173 -15.73332 -15.47962 -15.08239 -14.58992 -14.53960 -14.06332 -14.01239 -13.95260 -13.90757 -13.75886 -13.56742 -13.41862 -13.33676 -12.77130 -12.46582 -12.34896 -12.33236 -12.16788 -12.11209 -11.79828 -11.76238 -11.61590 -11.43636 -11.08394 -10.94469 -10.64109 -10.47840 -10.40051 -9.92094 -9.23159 -0.03427 0.15653 0.72854 1.10605 1.36656 1.43761 1.49640 1.79629 1.81771 1.85314 2.06677 2.41382 2.48271 3.39123 3.52257 3.64118 3.71988 3.74438 3.91311 3.97021 4.07422 4.27467 4.36840 4.43517 4.50053 4.52861 4.58752 4.62861 4.63552 4.65164 4.66955 4.68582 4.69141 4.85947 5.00293 5.00830 5.07916 5.21857 5.30911 5.35263 5.39129 5.45295 5.46492 5.52027 6.20778 6.50206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.969 3.031 3 C -0.443 4.443 4 C -0.398 4.398 5 C -0.110 4.110 6 C -0.082 4.082 7 C 0.063 3.937 8 O -0.298 6.298 9 C 0.166 3.834 10 C -0.200 4.200 11 C -0.069 4.069 12 C -0.157 4.157 13 C -0.075 4.075 14 O -0.538 6.538 15 Si 0.948 3.052 16 H -0.251 1.251 17 H -0.252 1.252 18 H -0.250 1.250 19 C -0.022 4.022 20 C -0.128 4.128 21 Br -0.032 7.032 22 C -0.394 4.394 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.377 0.623 40 H 0.145 0.855 41 H 0.082 0.918 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 1.273 -2.192 4.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.166 2.834 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.147 4.147 6 C -0.100 4.100 7 C -0.012 4.012 8 O -0.210 6.210 9 C 0.117 3.883 10 C -0.220 4.220 11 C -0.087 4.087 12 C -0.158 4.158 13 C -0.186 4.186 14 O -0.343 6.343 15 Si 0.770 3.230 16 H -0.174 1.174 17 H -0.175 1.175 18 H -0.174 1.174 19 C -0.042 4.042 20 C -0.208 4.208 21 Br 0.054 6.946 22 C -0.479 4.479 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.224 0.776 40 H 0.162 0.838 41 H 0.100 0.900 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.300 0.979 -1.750 3.862 hybrid contribution -0.171 0.297 -0.497 0.604 sum -3.471 1.276 -2.248 4.328 Atomic orbital electron populations 1.26014 1.19928 1.04582 1.04518 0.80495 0.67418 0.67577 0.67890 1.26016 1.06695 1.17839 1.04533 1.26507 1.05519 1.06309 1.10126 1.21711 1.00753 0.98121 0.94135 1.21694 0.98721 0.94936 0.94680 1.23111 0.85622 0.95219 0.97217 1.86219 1.44062 1.38293 1.52466 1.18646 0.91672 0.86807 0.91155 1.21177 1.03259 0.99879 0.97662 1.20963 0.94766 0.94366 0.98589 1.20206 0.97843 0.99708 0.98058 1.24916 0.89686 0.97237 1.06712 1.86524 1.24672 1.57225 1.65856 0.85716 0.78690 0.81364 0.77186 1.17442 1.17539 1.17400 1.20846 0.98225 0.92135 0.93000 1.21148 0.99317 1.00996 0.99360 1.96757 1.79166 1.85693 1.33015 1.26834 1.02632 1.07829 1.10604 0.91151 0.91097 0.91066 0.91041 0.91011 0.91169 0.90483 0.90349 0.91084 0.92061 0.89641 0.91604 0.91581 0.84284 0.85432 0.86250 0.77596 0.83772 0.89967 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.92 8.65 101.05 0.87 1.79 16 2 Si 0.97 -2.98 13.35 -169.99 -2.27 -5.24 16 3 C -0.44 0.84 8.65 101.05 0.87 1.71 16 4 C -0.40 0.54 5.85 38.29 0.22 0.76 16 5 C -0.11 0.05 5.21 -25.30 -0.13 -0.08 16 6 C -0.08 0.09 2.40 -88.69 -0.21 -0.13 16 7 C 0.06 -0.04 4.11 37.15 0.15 0.11 16 8 O -0.30 -0.55 9.25 -19.49 -0.18 -0.73 16 9 C 0.17 0.32 6.68 -39.20 -0.26 0.06 16 10 C -0.20 -0.06 9.04 -39.44 -0.36 -0.42 16 11 C -0.07 0.01 8.66 -39.60 -0.34 -0.34 16 12 C -0.16 -0.04 5.39 -104.60 -0.56 -0.60 16 13 C -0.07 0.06 2.82 36.01 0.10 0.17 16 14 O -0.54 0.04 12.77 -35.23 -0.45 -0.41 16 15 Si 0.95 -1.11 25.07 -169.99 -4.26 -5.37 16 16 H -0.25 0.27 7.11 56.52 0.40 0.68 16 17 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 18 H -0.25 0.18 7.11 56.52 0.40 0.59 16 19 C -0.02 -0.03 9.35 -39.58 -0.37 -0.40 16 20 C -0.13 -0.30 6.24 -39.38 -0.25 -0.55 16 21 Br -0.03 -0.09 33.16 -68.01 -2.26 -2.34 16 22 C -0.39 1.00 5.30 38.80 0.21 1.21 16 23 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.08 -0.08 8.04 -51.93 -0.42 -0.50 16 30 H 0.08 -0.11 8.04 -51.93 -0.42 -0.52 16 31 H 0.07 0.08 8.12 -51.93 -0.42 -0.34 16 32 H 0.06 -0.03 8.04 -51.93 -0.42 -0.45 16 33 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.07 -0.10 7.58 -51.93 -0.39 -0.49 16 35 H 0.07 -0.10 7.68 -51.93 -0.40 -0.50 16 36 H 0.14 -0.24 6.30 -52.48 -0.33 -0.57 16 37 H 0.13 -0.22 4.87 -52.48 -0.26 -0.48 16 38 H 0.12 -0.19 7.96 -51.93 -0.41 -0.61 16 39 H 0.38 -1.20 8.70 45.56 0.40 -0.80 16 40 H 0.14 0.09 8.06 -52.49 -0.42 -0.33 16 41 H 0.08 -0.24 8.03 -51.93 -0.42 -0.66 16 42 H 0.08 -0.23 8.06 -51.93 -0.42 -0.65 16 LS Contribution 358.65 15.07 5.40 5.40 Total: 0.00 -4.39 358.65 -10.09 -14.49 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: -6.03 Total: -9.09 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.05 Total: 3.30 kcal Atomic # 8 Polarization: -0.51 SS G_CDS: -0.63 Total: -1.14 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: -6.53 Total: -10.62 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.26 Total: -2.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -4.39 -10.09 -14.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_10154_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.681 kcal (2) G-P(sol) polarization free energy of solvation -4.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds