Wall clock time and date at job start Tue Mar 9 2021 13:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35919 * 117.00178 * 179.97438 * 8 7 6 10 10 C 1.38675 * 120.05755 * 359.71873 * 9 8 7 11 11 C 1.38186 * 119.95183 * 179.72086 * 10 9 8 12 12 C 1.38237 * 120.07366 * 0.53928 * 11 10 9 13 13 C 1.50705 * 119.94366 * 179.74444 * 12 11 10 14 14 O 1.42894 * 109.47189 * 120.01890 * 13 12 11 15 15 Si 1.86306 * 109.46830 * 0.02562 * 13 12 11 16 16 H 1.48497 * 109.47077 * 60.00399 * 15 13 12 17 17 H 1.48498 * 109.46722 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47383 * 300.00151 * 15 13 12 19 19 C 1.38281 * 120.11636 * 359.76049 * 12 11 10 20 20 C 1.38191 * 120.04872 * 359.96003 * 19 12 11 21 21 Br 1.89093 * 120.04076 * 179.97438 * 20 19 12 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08004 * 120.02436 * 0.02562 * 10 9 8 37 37 H 1.08006 * 119.96746 * 180.27593 * 11 10 9 38 38 H 1.08999 * 109.46812 * 240.02144 * 13 12 11 39 39 H 0.96697 * 114.00199 * 299.99693 * 14 13 12 40 40 H 1.07999 * 119.97959 * 179.97438 * 19 12 11 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8105 -4.6707 -1.5060 10 6 5.2006 -5.1933 -2.6365 11 6 5.7221 -6.3200 -3.2433 12 6 6.8444 -6.9330 -2.7182 13 6 7.4072 -8.1649 -3.3791 14 8 8.7514 -7.9116 -3.7926 15 14 6.3719 -8.6002 -4.8655 16 1 6.3890 -7.4702 -5.8288 17 1 6.9261 -9.8145 -5.5163 18 1 4.9750 -8.8634 -4.4359 19 6 7.4512 -6.4180 -1.5874 20 6 6.9373 -5.2882 -0.9800 21 35 7.7669 -4.5846 0.5667 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3216 -4.7172 -3.0453 37 1 5.2499 -6.7246 -4.1264 38 1 7.3948 -8.9943 -2.6719 39 1 8.8382 -7.1844 -4.4239 40 1 8.3277 -6.8989 -1.1788 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_10154_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:15 Heat of formation + Delta-G solvation = -85.097849 kcal Electronic energy + Delta-G solvation = -21546.728097 eV Core-core repulsion = 18275.548111 eV Total energy + Delta-G solvation = -3271.179986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 358.051 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46332 -39.47127 -37.49592 -36.50872 -33.58077 -31.84279 -30.74111 -30.27570 -29.11532 -28.38070 -27.58332 -26.09285 -24.46505 -23.32632 -22.34493 -20.73598 -19.41406 -18.37998 -17.36721 -17.07505 -16.54729 -16.16791 -15.92070 -15.69016 -15.42445 -15.02371 -14.60223 -14.50543 -13.98218 -13.85740 -13.84021 -13.80513 -13.67637 -13.42239 -13.30756 -13.17166 -12.64861 -12.45693 -12.26318 -12.23206 -12.12047 -12.05662 -11.89876 -11.71662 -11.55734 -11.36150 -11.24057 -10.76811 -10.45947 -10.42059 -10.27584 -9.98281 -9.27940 -0.07794 0.12603 0.61707 1.19152 1.47453 1.52100 1.68681 1.93197 2.00804 2.02175 2.12099 2.38570 2.64492 3.48216 3.57631 3.69206 3.77953 3.80833 4.00233 4.06984 4.08600 4.34331 4.38721 4.53632 4.56003 4.62419 4.64481 4.70776 4.75035 4.81006 4.83280 4.85197 4.86003 4.86429 5.00095 5.12980 5.20315 5.22125 5.35014 5.46158 5.51051 5.54673 5.60344 5.64532 6.21387 6.70867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.040 2.960 3 C -0.458 4.458 4 C -0.418 4.418 5 C -0.110 4.110 6 C -0.082 4.082 7 C 0.056 3.944 8 O -0.314 6.314 9 C 0.152 3.848 10 C -0.199 4.199 11 C -0.069 4.069 12 C -0.155 4.155 13 C -0.076 4.076 14 O -0.553 6.553 15 Si 0.982 3.018 16 H -0.247 1.247 17 H -0.276 1.276 18 H -0.252 1.252 19 C -0.030 4.030 20 C -0.145 4.145 21 Br -0.047 7.047 22 C -0.395 4.395 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.124 0.876 39 H 0.389 0.611 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 1.379 -3.592 5.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.233 2.767 3 C -0.565 4.565 4 C -0.502 4.502 5 C -0.148 4.148 6 C -0.101 4.101 7 C -0.018 4.018 8 O -0.227 6.227 9 C 0.104 3.896 10 C -0.218 4.218 11 C -0.087 4.087 12 C -0.157 4.157 13 C -0.187 4.187 14 O -0.360 6.360 15 Si 0.806 3.194 16 H -0.170 1.170 17 H -0.202 1.202 18 H -0.176 1.176 19 C -0.050 4.050 20 C -0.225 4.225 21 Br 0.038 6.962 22 C -0.480 4.480 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.178 0.822 37 H 0.164 0.836 38 H 0.142 0.858 39 H 0.238 0.762 40 H 0.162 0.838 41 H 0.111 0.889 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.398 1.100 -3.133 5.511 hybrid contribution 0.186 0.248 -0.049 0.314 sum -4.213 1.349 -3.182 5.449 Atomic orbital electron populations 1.26155 1.20775 1.04650 1.04589 0.79416 0.65880 0.65608 0.65758 1.26209 1.06582 1.19141 1.04602 1.26751 1.05478 1.06661 1.11293 1.21708 0.99931 0.98570 0.94555 1.21699 0.99089 0.94892 0.94413 1.23317 0.85260 0.95471 0.97732 1.86209 1.44952 1.38426 1.53147 1.18824 0.91859 0.87123 0.91843 1.21441 1.03649 0.99829 0.96914 1.21215 0.94481 0.94079 0.98974 1.20352 0.97846 0.99897 0.97571 1.25036 0.89527 0.96876 1.07213 1.86494 1.25144 1.57980 1.66418 0.85227 0.77844 0.80104 0.76224 1.17024 1.20159 1.17611 1.20916 0.98494 0.92061 0.93527 1.21288 1.00057 1.01791 0.99370 1.96720 1.79463 1.85970 1.34032 1.26907 1.02125 1.08045 1.10968 0.90791 0.91349 0.91010 0.91300 0.91445 0.90798 0.91223 0.90472 0.93386 0.91896 0.90387 0.90569 0.90391 0.82157 0.83578 0.85797 0.76176 0.83795 0.88945 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.26 8.65 113.37 0.98 3.24 16 2 Si 1.04 -6.88 13.35 68.60 0.92 -5.96 16 3 C -0.46 1.82 8.65 113.37 0.98 2.80 16 4 C -0.42 0.79 5.85 72.72 0.43 1.21 16 5 C -0.11 -0.01 5.21 31.52 0.16 0.15 16 6 C -0.08 0.17 2.40 -9.54 -0.02 0.15 16 7 C 0.06 -0.09 4.11 71.98 0.30 0.21 16 8 O -0.31 -1.38 9.25 -92.64 -0.86 -2.24 16 9 C 0.15 0.64 6.68 22.52 0.15 0.79 16 10 C -0.20 0.05 9.04 22.36 0.20 0.25 16 11 C -0.07 0.09 8.66 22.26 0.19 0.28 16 12 C -0.16 -0.03 5.39 -19.85 -0.11 -0.13 16 13 C -0.08 0.16 2.82 71.24 0.20 0.36 16 14 O -0.55 0.16 12.77 -148.98 -1.90 -1.74 16 15 Si 0.98 -3.16 25.07 68.60 1.72 -1.44 16 16 H -0.25 0.95 7.11 99.48 0.71 1.66 16 17 H -0.28 -0.25 7.11 99.48 0.71 0.45 16 18 H -0.25 0.72 7.11 99.48 0.71 1.43 16 19 C -0.03 -0.10 9.35 22.27 0.21 0.11 16 20 C -0.15 -0.83 6.24 22.40 0.14 -0.69 16 21 Br -0.05 -0.34 33.16 -20.37 -0.68 -1.01 16 22 C -0.40 2.47 5.30 73.05 0.39 2.85 16 23 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 24 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 25 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.04 8.04 -2.39 -0.02 -0.06 16 30 H 0.08 -0.15 8.04 -2.39 -0.02 -0.17 16 31 H 0.05 0.21 8.12 -2.39 -0.02 0.19 16 32 H 0.06 -0.03 8.04 -2.39 -0.02 -0.05 16 33 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.08 -0.30 7.58 -2.38 -0.02 -0.32 16 35 H 0.08 -0.32 7.68 -2.38 -0.02 -0.34 16 36 H 0.16 -0.84 6.30 -2.91 -0.02 -0.86 16 37 H 0.15 -0.79 4.87 -2.91 -0.01 -0.80 16 38 H 0.12 -0.41 7.96 -2.39 -0.02 -0.43 16 39 H 0.39 -2.58 8.70 -74.06 -0.64 -3.23 16 40 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.09 -0.72 8.03 -2.39 -0.02 -0.74 16 42 H 0.09 -0.67 8.06 -2.38 -0.02 -0.69 16 Total: 0.00 -10.91 358.65 4.52 -6.40 By element: Atomic # 1 Polarization: -6.70 SS G_CDS: 1.12 Total: -5.59 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 4.20 Total: 11.59 kcal Atomic # 8 Polarization: -1.22 SS G_CDS: -2.76 Total: -3.98 kcal Atomic # 14 Polarization: -10.04 SS G_CDS: 2.64 Total: -7.40 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -0.68 Total: -1.01 kcal Total: -10.91 4.52 -6.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_10154_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.702 kcal (2) G-P(sol) polarization free energy of solvation -10.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds