Wall clock time and date at job start Tue Mar 9 2021 13:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53005 * 109.12306 * 169.41478 * 6 5 4 8 8 O 1.42894 * 109.46845 * 66.45284 * 7 6 5 9 9 C 1.35811 * 116.99905 * 179.97438 * 8 7 6 10 10 C 1.36631 * 120.22442 * 90.00247 * 9 8 7 11 11 C 1.50697 * 119.53866 * 359.97438 * 10 9 8 12 12 O 1.42903 * 109.47438 * 285.00024 * 11 10 9 13 13 Si 1.86300 * 109.47043 * 165.00264 * 11 10 9 14 14 H 1.48505 * 109.47400 * 180.02562 * 13 11 10 15 15 H 1.48499 * 109.47019 * 300.00110 * 13 11 10 16 16 H 1.48502 * 109.47279 * 60.00333 * 13 11 10 17 17 C 1.39245 * 120.92254 * 180.02562 * 10 9 8 18 18 C 1.36137 * 121.06433 * 0.02562 * 17 10 9 19 19 C 1.40563 * 119.76994 * 359.97438 * 18 17 10 20 20 C 1.40512 * 121.27188 * 180.02562 * 19 18 17 21 21 C 1.36149 * 119.64354 * 179.11587 * 20 19 18 22 22 C 1.39314 * 120.97191 * 0.91689 * 21 20 19 23 23 C 1.36173 * 120.97424 * 359.38327 * 22 21 20 24 24 C 1.40366 * 119.66455 * 359.97438 * 23 22 21 25 25 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 26 26 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 27 27 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 28 28 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 30 30 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 32 32 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 33 33 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 34 34 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 35 35 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 36 36 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 37 37 H 1.09000 * 109.46644 * 186.45324 * 7 6 5 38 38 H 1.09000 * 109.46972 * 306.45125 * 7 6 5 39 39 H 1.08998 * 109.47578 * 45.00416 * 11 10 9 40 40 H 0.96693 * 114.00205 * 179.97438 * 12 11 10 41 41 H 1.08003 * 119.46615 * 179.97438 * 17 10 9 42 42 H 1.08002 * 120.11285 * 180.02562 * 18 17 10 43 43 H 1.07998 * 120.17537 * 359.97438 * 20 19 18 44 44 H 1.07999 * 119.50930 * 180.29400 * 21 20 19 45 45 H 1.08001 * 119.50911 * 179.40973 * 22 21 20 46 46 H 1.08004 * 120.16371 * 180.02562 * 23 22 21 47 47 H 1.08995 * 111.07416 * 213.38000 * 25 6 5 48 48 H 1.08996 * 111.09205 * 89.35608 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4527 -2.6558 -1.5012 8 8 4.9813 -3.8484 -0.9180 9 6 6.0629 -4.4037 -1.5232 10 6 7.3246 -4.0358 -1.1495 11 6 7.5076 -3.0093 -0.0615 12 8 7.2073 -1.7106 -0.5765 13 14 9.2712 -3.0472 0.5376 14 1 9.4515 -2.0360 1.6102 15 1 9.5833 -4.3967 1.0728 16 1 10.1845 -2.7392 -0.5921 17 6 8.4436 -4.5954 -1.7607 18 6 8.3143 -5.5241 -2.7477 19 6 7.0335 -5.9294 -3.1611 20 6 6.8634 -6.8858 -4.1764 21 6 5.6077 -7.2676 -4.5383 22 6 4.4854 -6.7100 -3.9298 23 6 4.6124 -5.7762 -2.9468 24 6 5.8915 -5.3676 -2.5379 25 6 2.5556 -1.0124 -1.4423 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.1907 2.2612 0.8899 30 1 3.6274 1.7027 -0.0005 31 1 2.1908 2.2612 -0.8900 32 1 2.9328 -0.3695 2.2392 33 1 1.8198 -1.7216 1.8247 34 1 4.5681 -1.0679 0.6057 35 1 4.0203 -2.6213 1.2792 36 1 2.5407 -3.0062 -0.5835 37 1 4.1428 -2.8590 -2.5262 38 1 5.2187 -1.8803 -1.5001 39 1 6.8373 -3.2353 0.7677 40 1 7.3037 -0.9988 0.0708 41 1 9.4301 -4.2872 -1.4471 42 1 9.1928 -5.9484 -3.2109 43 1 7.7244 -7.3259 -4.6573 44 1 5.4796 -8.0064 -5.3156 45 1 3.5001 -7.0232 -4.2420 46 1 3.7334 -5.3527 -2.4837 47 1 1.7543 -1.3787 -2.0838 48 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_10544690_18051908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:29 Heat of formation + Delta-G solvation = -77.780891 kcal Electronic energy + Delta-G solvation = -26725.647128 eV Core-core repulsion = 23254.386392 eV Total energy + Delta-G solvation = -3471.260736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75534 -39.45700 -38.16763 -36.95067 -36.37635 -32.91664 -31.91271 -30.70323 -29.85968 -29.22916 -28.50785 -27.20051 -26.34461 -24.35561 -23.85293 -22.83992 -22.50281 -20.70953 -19.01979 -18.55070 -18.36396 -17.55805 -16.85719 -16.36672 -16.15264 -15.88054 -15.72809 -15.18667 -14.94560 -14.78264 -14.51634 -14.41923 -14.13813 -13.99839 -13.94798 -13.87957 -13.76528 -13.52155 -13.37118 -13.27302 -13.23729 -12.81236 -12.63356 -12.28107 -12.24720 -12.05468 -12.03015 -11.93306 -11.70976 -11.59932 -11.34551 -10.88288 -10.71436 -10.62889 -10.47452 -10.27931 -10.25753 -9.54472 -8.68093 -0.46007 0.00656 1.02061 1.15483 1.43821 1.49762 1.60983 1.87968 1.89062 1.89691 1.93525 2.54020 2.75067 3.15157 3.42642 3.70491 3.82598 3.91823 3.96830 4.04801 4.10326 4.19064 4.23259 4.38034 4.39429 4.42429 4.49387 4.58649 4.65656 4.68501 4.68974 4.71956 4.72399 4.73284 4.75467 4.86513 4.90521 5.00708 5.10401 5.15156 5.17230 5.20803 5.23542 5.36554 5.42832 5.44557 5.51315 5.51647 5.56846 5.62341 5.66007 5.74283 6.01686 6.57004 6.69175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.964 3.036 3 C -0.441 4.441 4 C -0.397 4.397 5 C -0.108 4.108 6 C -0.078 4.078 7 C 0.069 3.931 8 O -0.331 6.331 9 C 0.145 3.855 10 C -0.099 4.099 11 C -0.075 4.075 12 O -0.542 6.542 13 Si 0.945 3.055 14 H -0.256 1.256 15 H -0.248 1.248 16 H -0.248 1.248 17 C -0.109 4.109 18 C -0.106 4.106 19 C -0.038 4.038 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.093 4.093 24 C -0.071 4.071 25 C -0.394 4.394 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.378 0.622 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.130 0.870 47 H 0.079 0.921 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 1.191 0.082 1.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.162 2.838 3 C -0.549 4.549 4 C -0.484 4.484 5 C -0.145 4.145 6 C -0.096 4.096 7 C -0.004 4.004 8 O -0.248 6.248 9 C 0.100 3.900 10 C -0.100 4.100 11 C -0.186 4.186 12 O -0.349 6.349 13 Si 0.768 3.232 14 H -0.180 1.180 15 H -0.171 1.171 16 H -0.172 1.172 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.038 4.038 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.111 4.111 24 C -0.072 4.072 25 C -0.479 4.479 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.225 0.775 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.148 0.852 47 H 0.098 0.902 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.282 0.803 -0.017 0.851 hybrid contribution -0.202 0.182 0.069 0.281 sum 0.080 0.985 0.052 0.990 Atomic orbital electron populations 1.26023 1.20101 1.04554 1.04405 0.80540 0.67314 0.67634 0.68280 1.26001 1.06655 1.17828 1.04431 1.26670 1.03978 1.08001 1.09726 1.21879 0.97827 1.00623 0.94214 1.21478 0.95574 0.98063 0.94497 1.23194 0.96101 0.85362 0.95776 1.85895 1.43696 1.42172 1.53026 1.18059 0.86372 0.93430 0.92098 1.19183 0.92833 0.98615 0.99352 1.24642 1.11728 0.84225 0.97969 1.86480 1.92154 1.14966 1.41264 0.85792 0.75890 0.81804 0.79753 1.17996 1.17147 1.17183 1.20644 0.97806 0.97423 0.96781 1.20974 0.96374 0.97643 0.97376 1.18014 0.92536 0.96915 0.96304 1.21054 0.97974 0.97024 0.96691 1.20945 0.92526 0.99542 0.99675 1.20919 0.99076 0.97049 0.96652 1.20975 0.96262 0.97109 0.96794 1.18353 0.93939 0.98458 0.96446 1.26660 1.05228 1.05413 1.10632 0.91258 0.91156 0.91072 0.91181 0.91014 0.91197 0.90510 0.90510 0.91637 0.91232 0.90511 0.93505 0.90301 0.90215 0.77496 0.85561 0.84827 0.85174 0.85673 0.85715 0.85232 0.90212 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.63 8.65 101.05 0.87 1.50 16 2 Si 0.96 -2.38 13.35 -169.99 -2.27 -4.65 16 3 C -0.44 0.72 8.65 101.05 0.87 1.59 16 4 C -0.40 0.47 5.95 38.72 0.23 0.70 16 5 C -0.11 0.03 5.06 -24.87 -0.13 -0.10 16 6 C -0.08 -0.01 2.58 -89.07 -0.23 -0.24 16 7 C 0.07 0.11 5.22 37.16 0.19 0.31 16 8 O -0.33 -1.05 8.29 -19.15 -0.16 -1.20 16 9 C 0.14 0.54 5.67 -39.12 -0.22 0.32 16 10 C -0.10 -0.28 5.27 -104.83 -0.55 -0.84 16 11 C -0.08 -0.05 2.31 36.00 0.08 0.03 16 12 O -0.54 -0.07 10.69 -35.23 -0.38 -0.45 16 13 Si 0.94 0.05 25.46 -169.99 -4.33 -4.28 16 14 H -0.26 0.00 7.11 56.52 0.40 0.40 16 15 H -0.25 -0.24 7.11 56.52 0.40 0.17 16 16 H -0.25 -0.21 6.71 56.52 0.38 0.17 16 17 C -0.11 -0.23 8.56 -39.96 -0.34 -0.57 16 18 C -0.11 -0.19 9.77 -39.46 -0.39 -0.57 16 19 C -0.04 -0.11 5.74 -106.84 -0.61 -0.72 16 20 C -0.11 -0.15 9.77 -39.48 -0.39 -0.53 16 21 C -0.11 -0.11 9.95 -39.93 -0.40 -0.50 16 22 C -0.12 -0.17 9.95 -39.92 -0.40 -0.56 16 23 C -0.09 -0.25 9.56 -39.52 -0.38 -0.62 16 24 C -0.07 -0.26 5.75 -106.73 -0.61 -0.88 16 25 C -0.39 0.47 5.28 38.41 0.20 0.67 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.08 -0.11 8.06 -51.93 -0.42 -0.53 16 33 H 0.08 -0.06 8.06 -51.93 -0.42 -0.48 16 34 H 0.06 -0.06 8.05 -51.93 -0.42 -0.48 16 35 H 0.07 0.06 8.12 -51.93 -0.42 -0.36 16 36 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.05 0.09 8.13 -51.93 -0.42 -0.33 16 38 H 0.08 0.15 5.86 -51.93 -0.30 -0.16 16 39 H 0.08 0.01 7.78 -51.93 -0.40 -0.39 16 40 H 0.38 -1.51 8.74 45.56 0.40 -1.11 16 41 H 0.13 0.08 4.79 -52.48 -0.25 -0.18 16 42 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 43 H 0.13 -0.12 8.06 -52.49 -0.42 -0.54 16 44 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 45 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 46 H 0.13 0.24 7.62 -52.48 -0.40 -0.16 16 47 H 0.08 -0.11 8.04 -51.93 -0.42 -0.52 16 48 H 0.08 -0.09 7.84 -51.93 -0.41 -0.50 16 LS Contribution 381.62 15.07 5.75 5.75 Total: 0.00 -5.06 381.62 -10.86 -15.92 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: -7.30 Total: -10.06 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.18 Total: -1.03 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -0.54 Total: -1.65 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: -6.60 Total: -8.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -5.06 -10.86 -15.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_10544690_18051908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.858 kcal (2) G-P(sol) polarization free energy of solvation -5.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds