Wall clock time and date at job start Tue Mar 9 2021 13:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86298 * 111.24183 * 2 1 4 4 C 1.89326 * 111.46162 * 125.06871 * 2 1 3 5 5 C 1.55148 * 101.34911 * 120.85565 * 4 2 1 6 6 C 1.53573 * 111.28965 * 331.40982 * 5 4 2 7 7 C 1.53006 * 109.47421 * 169.06060 * 6 5 4 8 8 O 1.42900 * 109.46698 * 66.45681 * 7 6 5 9 9 C 1.35956 * 117.00024 * 179.97438 * 8 7 6 10 10 C 1.38791 * 120.05941 * 89.99953 * 9 8 7 11 11 Cl 1.73593 * 120.03517 * 0.04444 * 10 9 8 12 12 C 1.38270 * 119.93452 * 180.02562 * 10 9 8 13 13 C 1.38256 * 120.05959 * 0.02562 * 12 10 9 14 14 C 1.50706 * 119.93569 * 179.97438 * 13 12 10 15 15 O 1.42895 * 109.46938 * 64.99621 * 14 13 12 16 16 Si 1.86301 * 109.47233 * 184.99966 * 14 13 12 17 17 H 1.48496 * 109.46781 * 179.97438 * 16 14 13 18 18 H 1.48494 * 109.46934 * 299.99745 * 16 14 13 19 19 H 1.48505 * 109.47118 * 60.00057 * 16 14 13 20 20 C 1.38257 * 120.13195 * 0.23571 * 13 12 10 21 21 C 1.38268 * 120.06044 * 359.48859 * 20 13 12 22 22 Cl 1.73601 * 120.03339 * 180.28220 * 21 20 13 23 23 C 1.55916 * 109.50537 * 49.04358 * 6 5 4 24 24 H 1.08998 * 109.47174 * 294.92738 * 1 2 3 25 25 H 1.08995 * 109.47363 * 54.93162 * 1 2 3 26 26 H 1.09007 * 109.46864 * 174.93482 * 1 2 3 27 27 H 1.08998 * 109.47573 * 185.07188 * 3 2 1 28 28 H 1.09008 * 109.47115 * 305.06797 * 3 2 1 29 29 H 1.09000 * 109.46904 * 65.06613 * 3 2 1 30 30 H 1.09000 * 111.05096 * 2.83516 * 4 2 1 31 31 H 1.09003 * 111.08593 * 238.88633 * 4 2 1 32 32 H 1.09004 * 109.12833 * 210.93397 * 5 4 2 33 33 H 1.09003 * 109.12814 * 91.89774 * 5 4 2 34 34 H 1.08993 * 109.47764 * 289.06332 * 6 5 4 35 35 H 1.08998 * 109.47409 * 306.46269 * 7 6 5 36 36 H 1.08999 * 109.47194 * 186.45680 * 7 6 5 37 37 H 1.07993 * 119.97192 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.46953 * 304.99658 * 14 13 12 39 39 H 0.96709 * 113.99981 * 180.02562 * 15 14 13 40 40 H 1.07994 * 119.97095 * 179.72637 * 20 13 12 41 41 H 1.08993 * 111.42886 * 76.90418 * 23 6 5 42 42 H 1.09002 * 111.42629 * 201.84937 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5557 -1.0124 1.4421 5 6 3.3935 -2.0804 0.6908 6 6 2.8148 -2.3636 -0.7033 7 6 3.8087 -3.2047 -1.5069 8 8 3.9299 -4.4976 -0.9105 9 6 4.7802 -5.3751 -1.5068 10 6 6.1131 -5.4217 -1.1227 11 17 6.6966 -4.3603 0.1208 12 6 6.9756 -6.3148 -1.7312 13 6 6.5115 -7.1604 -2.7217 14 6 7.4543 -8.1323 -3.3834 15 8 7.9053 -9.0881 -2.4218 16 14 6.5689 -9.0126 -4.7661 17 1 7.4980 -9.9698 -5.4185 18 1 5.4029 -9.7501 -4.2168 19 1 6.1002 -8.0192 -5.7655 20 6 5.1855 -7.1124 -3.1101 21 6 4.3171 -6.2253 -2.5012 22 17 2.6506 -6.1707 -2.9844 23 6 2.5569 -1.0159 -1.4435 24 1 -0.3633 0.4331 0.9319 25 1 -0.3634 0.5904 -0.8411 26 1 -0.3633 -1.0237 -0.0907 27 1 3.6237 1.7043 -0.0908 28 1 2.1192 2.2890 -0.8412 29 1 2.2658 2.2320 0.9319 30 1 1.7534 -1.4765 2.0157 31 1 3.1883 -0.3989 2.0837 32 1 3.3973 -3.0038 1.2700 33 1 4.4177 -1.7224 0.5863 34 1 1.8758 -2.9079 -0.6033 35 1 4.7816 -2.7133 -1.5098 36 1 3.4513 -3.3091 -2.5313 37 1 8.0130 -6.3513 -1.4330 38 1 8.3101 -7.5909 -3.7867 39 1 8.5173 -9.7464 -2.7786 40 1 4.8268 -7.7710 -3.8872 41 1 3.4838 -0.5864 -1.8233 42 1 1.8202 -1.1328 -2.2384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_12913552_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:43 Heat of formation + Delta-G solvation = -107.833623 kcal Electronic energy + Delta-G solvation = -23956.891626 eV Core-core repulsion = 20304.944161 eV Total energy + Delta-G solvation = -3651.947465 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37723 -39.38525 -37.88663 -37.78262 -37.12101 -36.52593 -32.20943 -31.89571 -30.53505 -29.24084 -28.51278 -27.53254 -26.10245 -24.35979 -23.94753 -22.61804 -20.77847 -19.31130 -18.72174 -18.01346 -17.54401 -16.81854 -16.41326 -16.13047 -15.88912 -15.37169 -15.10414 -14.88098 -14.72979 -14.55340 -14.15147 -13.96459 -13.94234 -13.75503 -13.55571 -13.39897 -13.35822 -13.30475 -13.14224 -12.78556 -12.61458 -12.28943 -12.23046 -12.17766 -12.09344 -12.01590 -11.89822 -11.78804 -11.38521 -10.91480 -10.88191 -10.56990 -10.53717 -10.32092 -9.90642 -9.74351 -0.35116 -0.22044 0.73290 0.94491 1.22296 1.30256 1.37213 1.57714 1.77914 1.86481 1.88135 1.97495 2.47138 2.58832 3.11248 3.56464 3.69641 3.82745 3.83837 3.89253 4.02428 4.06767 4.20486 4.31769 4.43736 4.53969 4.58250 4.62713 4.68068 4.69020 4.70950 4.72571 4.74353 4.75778 4.81772 4.98829 5.10915 5.16967 5.18402 5.39826 5.42348 5.49166 5.51370 5.54694 6.28419 6.41279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.966 3.034 3 C -0.441 4.441 4 C -0.398 4.398 5 C -0.107 4.107 6 C -0.080 4.080 7 C 0.074 3.926 8 O -0.316 6.316 9 C 0.124 3.876 10 C -0.047 4.047 11 Cl -0.037 7.037 12 C -0.064 4.064 13 C -0.058 4.058 14 C -0.079 4.079 15 O -0.542 6.542 16 Si 0.936 3.064 17 H -0.249 1.249 18 H -0.243 1.243 19 H -0.245 1.245 20 C -0.099 4.099 21 C -0.042 4.042 22 Cl -0.038 7.038 23 C -0.393 4.393 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.385 0.615 40 H 0.141 0.859 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 0.787 -2.937 3.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.163 2.837 3 C -0.550 4.550 4 C -0.484 4.484 5 C -0.145 4.145 6 C -0.098 4.098 7 C 0.000 4.000 8 O -0.233 6.233 9 C 0.078 3.922 10 C -0.075 4.075 11 Cl -0.008 7.008 12 C -0.082 4.082 13 C -0.059 4.059 14 C -0.190 4.190 15 O -0.348 6.348 16 Si 0.757 3.243 17 H -0.173 1.173 18 H -0.166 1.166 19 H -0.168 1.168 20 C -0.118 4.118 21 C -0.070 4.070 22 Cl -0.009 7.009 23 C -0.478 4.478 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.167 0.833 38 H 0.102 0.898 39 H 0.233 0.767 40 H 0.158 0.842 41 H 0.100 0.900 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.969 0.836 -2.992 3.254 hybrid contribution 0.675 -0.151 -0.097 0.699 sum 1.644 0.685 -3.089 3.566 Atomic orbital electron populations 1.26011 1.19892 1.04615 1.04484 0.80532 0.67651 0.67372 0.68100 1.26008 1.06597 1.17904 1.04466 1.26504 1.05234 1.06630 1.10040 1.21691 0.99130 0.99509 0.94158 1.21639 0.98642 0.94915 0.94637 1.23021 0.99708 0.80535 0.96712 1.86115 1.61185 1.23623 1.52382 1.18069 0.87851 0.93210 0.93087 1.21244 0.92531 0.97637 0.96059 1.98407 1.87912 1.63711 1.50798 1.20952 1.00555 0.92626 0.94106 1.19114 0.92803 0.96707 0.97285 1.24669 1.01252 0.93542 0.99514 1.86510 1.67570 1.43734 1.37000 0.85872 0.80967 0.80770 0.76649 1.17309 1.16581 1.16813 1.20930 0.92169 0.98272 1.00414 1.21042 0.87827 1.00384 0.97734 1.98407 1.14343 1.97692 1.90452 1.26810 1.06607 1.03892 1.10503 0.91077 0.91209 0.91021 0.91065 0.91191 0.91128 0.90557 0.90445 0.91171 0.92078 0.89754 0.92361 0.92368 0.83308 0.89753 0.76732 0.84161 0.90034 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.57 8.65 101.05 0.87 1.45 16 2 Si 0.97 -2.23 13.36 -169.99 -2.27 -4.50 16 3 C -0.44 0.64 8.65 101.05 0.87 1.51 16 4 C -0.40 0.26 5.85 38.29 0.22 0.49 16 5 C -0.11 -0.05 5.21 -25.30 -0.13 -0.18 16 6 C -0.08 -0.01 2.40 -88.76 -0.21 -0.22 16 7 C 0.07 0.08 5.43 37.16 0.20 0.28 16 8 O -0.32 -0.88 8.76 -19.60 -0.17 -1.05 16 9 C 0.12 0.33 5.71 -39.18 -0.22 0.11 16 10 C -0.05 -0.10 6.33 -39.37 -0.25 -0.35 16 11 Cl -0.04 -0.07 28.50 -51.86 -1.48 -1.55 16 12 C -0.06 -0.06 9.46 -39.56 -0.37 -0.43 16 13 C -0.06 -0.03 5.39 -104.61 -0.56 -0.60 16 14 C -0.08 0.13 2.79 36.01 0.10 0.23 16 15 O -0.54 0.58 12.81 -35.23 -0.45 0.12 16 16 Si 0.94 -1.45 25.13 -169.99 -4.27 -5.72 16 17 H -0.25 0.39 7.11 56.52 0.40 0.79 16 18 H -0.24 0.01 7.05 56.52 0.40 0.41 16 19 H -0.24 0.25 7.11 56.52 0.40 0.66 16 20 C -0.10 -0.12 8.45 -39.56 -0.33 -0.45 16 21 C -0.04 -0.10 6.33 -39.37 -0.25 -0.35 16 22 Cl -0.04 -0.08 28.50 -51.86 -1.48 -1.56 16 23 C -0.39 0.56 5.29 38.72 0.20 0.76 16 24 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.07 7.96 -51.92 -0.41 -0.48 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.10 7.96 -51.92 -0.41 -0.52 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H 0.08 -0.03 8.04 -51.93 -0.42 -0.45 16 31 H 0.08 -0.05 8.04 -51.93 -0.42 -0.47 16 32 H 0.07 0.13 8.12 -51.93 -0.42 -0.29 16 33 H 0.06 0.03 8.04 -51.93 -0.42 -0.39 16 34 H 0.08 0.03 8.13 -51.93 -0.42 -0.39 16 35 H 0.06 0.04 8.07 -51.93 -0.42 -0.38 16 36 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.15 -0.08 8.06 -52.49 -0.42 -0.51 16 38 H 0.08 -0.32 7.96 -51.93 -0.41 -0.73 16 39 H 0.38 -2.11 8.74 45.56 0.40 -1.71 16 40 H 0.14 -0.01 4.86 -52.49 -0.25 -0.26 16 41 H 0.08 -0.13 8.03 -51.93 -0.42 -0.55 16 42 H 0.08 -0.14 8.06 -51.93 -0.42 -0.56 16 LS Contribution 374.33 15.07 5.64 5.64 Total: 0.00 -4.52 374.33 -10.09 -14.60 By element: Atomic # 1 Polarization: -2.49 SS G_CDS: -5.75 Total: -8.24 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 0.14 Total: 2.25 kcal Atomic # 8 Polarization: -0.30 SS G_CDS: -0.62 Total: -0.93 kcal Atomic # 14 Polarization: -3.67 SS G_CDS: -6.54 Total: -10.21 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -2.96 Total: -3.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -4.52 -10.09 -14.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_12913552_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.229 kcal (2) G-P(sol) polarization free energy of solvation -4.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds