Wall clock time and date at job start Tue Mar 9 2021 13:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76204 * 103.00095 * 2 1 4 4 C 1.38758 * 120.08788 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.96914 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.91607 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.46871 * 299.99869 * 6 5 4 8 8 Si 1.86305 * 109.47386 * 179.97438 * 6 5 4 9 9 H 1.48494 * 109.47149 * 59.99553 * 8 6 5 10 10 H 1.48499 * 109.47350 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46613 * 299.99921 * 8 6 5 12 12 C 1.38225 * 120.16998 * 359.97438 * 5 4 3 13 13 C 1.38349 * 120.18708 * 359.75034 * 12 5 4 14 14 C 1.38438 * 120.02451 * 0.50316 * 13 12 5 15 15 O 1.36012 * 120.08472 * 179.77218 * 14 13 12 16 16 C 1.42901 * 116.99945 * 359.72282 * 15 14 13 17 17 C 1.52995 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.53566 * 109.47643 * 293.54788 * 17 16 15 19 19 C 1.55147 * 111.29010 * 190.93802 * 18 17 16 20 20 Si 1.89333 * 101.34989 * 28.58791 * 19 18 17 21 21 C 1.86301 * 111.45813 * 114.13512 * 20 19 18 22 22 C 1.86297 * 111.45926 * 239.08100 * 20 19 18 23 23 C 1.56066 * 109.48114 * 173.43596 * 17 16 15 24 24 H 1.08996 * 109.47337 * 60.00540 * 1 2 3 25 25 H 1.09008 * 109.46750 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47754 * 299.99591 * 1 2 3 27 27 H 1.08001 * 120.01655 * 359.97438 * 4 3 2 28 28 H 1.09006 * 109.47456 * 59.99647 * 6 5 4 29 29 H 0.96702 * 114.00146 * 299.99570 * 7 6 5 30 30 H 1.07995 * 119.90879 * 180.02562 * 12 5 4 31 31 H 1.07996 * 119.98678 * 180.25826 * 13 12 5 32 32 H 1.09007 * 109.46885 * 60.00239 * 16 15 14 33 33 H 1.09005 * 109.47062 * 300.00439 * 16 15 14 34 34 H 1.09004 * 109.46872 * 53.55317 * 17 16 15 35 35 H 1.09003 * 109.12206 * 70.45930 * 18 17 16 36 36 H 1.08996 * 109.12221 * 311.42400 * 18 17 16 37 37 H 1.09002 * 111.04815 * 270.56954 * 19 18 17 38 38 H 1.08999 * 111.04827 * 146.61077 * 19 18 17 39 39 H 1.09002 * 109.47148 * 185.06678 * 21 20 19 40 40 H 1.09001 * 109.46900 * 65.06830 * 21 20 19 41 41 H 1.09004 * 109.47198 * 305.06808 * 21 20 19 42 42 H 1.08995 * 109.47233 * 294.93123 * 22 20 19 43 43 H 1.08997 * 109.47080 * 54.93469 * 22 20 19 44 44 H 1.08998 * 109.47258 * 174.93080 * 22 20 19 45 45 H 1.08996 * 111.41269 * 43.11689 * 23 17 16 46 46 H 1.09006 * 111.49251 * 278.12945 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1970 2.6648 -0.0005 5 6 1.5108 4.0111 -0.0011 6 6 0.4093 5.0396 -0.0011 7 8 -0.3989 4.8719 -1.1676 8 14 1.1540 6.7473 -0.0011 9 1 1.9936 6.9212 -1.2135 10 1 0.0686 7.7607 -0.0004 11 1 1.9935 6.9211 1.2115 12 6 2.8323 4.4164 -0.0005 13 6 3.8480 3.4771 0.0057 14 6 3.5428 2.1268 0.0010 15 8 4.5404 1.2023 0.0025 16 6 5.8817 1.6952 0.0029 17 6 6.8579 0.5172 0.0052 18 6 6.7383 -0.2443 1.3334 19 6 7.8876 -1.2733 1.4983 20 14 9.2671 -0.4554 0.4919 21 6 10.6906 0.0584 1.5785 22 6 9.8414 -1.5558 -0.8973 23 6 8.3156 1.0490 -0.1625 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.1636 2.3509 -0.0014 28 1 -0.2068 4.9123 0.8891 29 1 0.0848 4.9719 -1.9990 30 1 3.0726 5.4693 -0.0005 31 1 4.8794 3.7974 0.0104 32 1 6.0449 2.3037 0.8925 33 1 6.0460 2.3021 -0.8876 34 1 6.6203 -0.1532 -0.8208 35 1 5.7830 -0.7687 1.3595 36 1 6.7753 0.4677 2.1578 37 1 7.6127 -2.2387 1.0734 38 1 8.1744 -1.3755 2.5449 39 1 11.4233 0.6038 0.9837 40 1 11.1581 -0.8277 2.0079 41 1 10.3231 0.6997 2.3797 42 1 10.3037 -2.4520 -0.4836 43 1 8.9879 -1.8385 -1.5134 44 1 10.5687 -1.0207 -1.5078 45 1 8.4912 1.9303 0.4543 46 1 8.5514 1.2449 -1.2086 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_13446734_18051908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:30 Heat of formation + Delta-G solvation = -97.379630 kcal Electronic energy + Delta-G solvation = -23347.378297 eV Core-core repulsion = 20065.334605 eV Total energy + Delta-G solvation = -3282.043693 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.128 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27229 -39.37897 -37.47477 -36.48700 -32.60048 -31.82253 -30.64088 -29.79544 -29.26798 -28.54083 -27.52840 -26.05458 -24.58945 -23.62704 -22.39220 -20.79756 -19.45185 -18.45256 -17.69273 -17.22269 -16.95494 -16.22227 -16.17609 -15.74409 -15.56540 -15.42083 -15.03898 -14.95058 -14.70990 -14.42080 -14.02459 -13.98019 -13.91896 -13.72204 -13.66948 -13.54499 -13.46052 -13.35108 -13.27697 -12.72181 -12.45112 -12.31920 -12.27278 -12.12580 -12.07277 -11.69614 -11.54956 -11.38898 -11.16898 -10.91749 -10.74907 -10.60170 -10.41403 -10.36498 -9.43110 -8.17025 0.12252 0.28122 0.61815 1.12005 1.40295 1.47668 1.53279 1.55204 1.82809 1.84870 1.88481 2.19564 2.51822 2.54272 3.43051 3.63096 3.71769 3.80236 3.86007 3.98626 4.04179 4.14765 4.15784 4.22211 4.34686 4.43417 4.49580 4.54548 4.56458 4.64320 4.65895 4.67323 4.69168 4.70298 4.71691 4.72919 4.78195 4.97212 5.04786 5.11651 5.16724 5.34933 5.35646 5.38637 5.43291 5.48439 5.49526 5.63938 6.35905 6.51374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.086 6.086 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.140 4.140 6 C -0.076 4.076 7 O -0.540 6.540 8 Si 0.949 3.051 9 H -0.251 1.251 10 H -0.254 1.254 11 H -0.250 1.250 12 C -0.089 4.089 13 C -0.188 4.188 14 C 0.157 3.843 15 O -0.302 6.302 16 C 0.065 3.935 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.398 4.398 20 Si 0.968 3.032 21 C -0.442 4.442 22 C -0.442 4.442 23 C -0.394 4.394 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.377 0.623 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 0.857 -0.092 2.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.156 5.844 3 C -0.234 4.234 4 C -0.092 4.092 5 C -0.143 4.143 6 C -0.187 4.187 7 O -0.345 6.345 8 Si 0.772 3.228 9 H -0.175 1.175 10 H -0.178 1.178 11 H -0.174 1.174 12 C -0.110 4.110 13 C -0.208 4.208 14 C 0.105 3.895 15 O -0.215 6.215 16 C -0.010 4.010 17 C -0.100 4.100 18 C -0.147 4.147 19 C -0.484 4.484 20 Si 1.166 2.834 21 C -0.550 4.550 22 C -0.551 4.551 23 C -0.479 4.479 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.102 0.898 27 H 0.154 0.846 28 H 0.135 0.865 29 H 0.224 0.776 30 H 0.142 0.858 31 H 0.154 0.846 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.609 0.280 0.353 2.648 hybrid contribution -0.577 1.053 -0.355 1.252 sum 2.032 1.333 -0.001 2.431 Atomic orbital electron populations 1.23763 0.95533 1.07297 1.05725 1.85789 1.05110 1.01197 1.92305 1.21092 0.93197 0.98290 1.10780 1.20848 0.98129 0.91572 0.98634 1.20076 0.94329 0.94770 1.05097 1.24922 0.95498 1.06383 0.91870 1.86504 1.37643 1.94955 1.15361 0.85689 0.79588 0.75728 0.81771 1.17457 1.17751 1.17418 1.20842 0.92040 0.99158 0.98916 1.21099 1.00422 0.91363 1.07929 1.18355 0.87019 0.88083 0.96022 1.86171 1.14401 1.33145 1.87764 1.23055 0.78874 0.97585 1.01501 1.21687 0.92991 0.95749 0.99597 1.21706 0.99584 0.97419 0.95969 1.26506 1.10451 1.03090 1.08385 0.80503 0.67501 0.67707 0.67734 1.26012 1.13524 1.05710 1.09775 1.26013 1.06034 1.09912 1.13097 1.26834 1.01973 1.12775 1.06312 0.89632 0.87229 0.89752 0.84600 0.86496 0.77616 0.85800 0.84626 0.91788 0.91762 0.89711 0.91091 0.92093 0.90489 0.90377 0.91165 0.91108 0.91070 0.91054 0.91003 0.91181 0.89999 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.08 9.15 101.05 0.92 1.00 16 2 S -0.09 -0.23 22.05 -107.50 -2.37 -2.60 16 3 C -0.12 -0.36 6.12 -38.95 -0.24 -0.60 16 4 C -0.07 -0.12 8.92 -39.39 -0.35 -0.47 16 5 C -0.14 -0.14 5.39 -104.63 -0.56 -0.70 16 6 C -0.08 0.02 2.82 36.00 0.10 0.12 16 7 O -0.54 -0.16 12.77 -35.23 -0.45 -0.60 16 8 Si 0.95 -0.56 25.07 -169.99 -4.26 -4.82 16 9 H -0.25 0.11 7.11 56.52 0.40 0.51 16 10 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 11 H -0.25 0.02 7.11 56.52 0.40 0.42 16 12 C -0.09 -0.08 8.66 -39.55 -0.34 -0.42 16 13 C -0.19 -0.25 9.04 -39.47 -0.36 -0.61 16 14 C 0.16 0.46 6.69 -39.07 -0.26 0.19 16 15 O -0.30 -0.86 9.29 -19.78 -0.18 -1.04 16 16 C 0.06 0.01 4.11 37.15 0.15 0.17 16 17 C -0.08 0.04 2.40 -88.69 -0.21 -0.18 16 18 C -0.11 -0.01 5.21 -25.30 -0.13 -0.14 16 19 C -0.40 0.39 5.85 38.29 0.22 0.61 16 20 Si 0.97 -2.64 13.35 -169.99 -2.27 -4.91 16 21 C -0.44 0.80 8.65 101.05 0.87 1.67 16 22 C -0.44 0.72 8.65 101.05 0.87 1.60 16 23 C -0.39 0.80 5.30 38.80 0.21 1.01 16 24 H 0.08 -0.08 7.75 -51.93 -0.40 -0.48 16 25 H 0.11 -0.18 8.14 -51.92 -0.42 -0.60 16 26 H 0.08 -0.09 7.75 -51.93 -0.40 -0.49 16 27 H 0.14 0.09 5.88 -52.49 -0.31 -0.22 16 28 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.38 -1.02 8.70 45.56 0.40 -0.62 16 30 H 0.12 -0.09 4.86 -52.49 -0.26 -0.34 16 31 H 0.14 -0.09 6.30 -52.49 -0.33 -0.42 16 32 H 0.06 -0.04 7.58 -51.93 -0.39 -0.43 16 33 H 0.06 -0.04 7.68 -51.93 -0.40 -0.44 16 34 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 35 H 0.07 0.12 8.12 -51.93 -0.42 -0.30 16 36 H 0.06 0.00 8.04 -51.93 -0.42 -0.42 16 37 H 0.08 -0.05 8.04 -51.93 -0.42 -0.47 16 38 H 0.08 -0.08 8.04 -51.93 -0.42 -0.50 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 41 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 44 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 45 H 0.08 -0.20 8.03 -51.93 -0.42 -0.61 16 46 H 0.08 -0.19 8.06 -51.93 -0.42 -0.61 16 LS Contribution 377.64 15.07 5.69 5.69 Total: 0.00 -4.91 377.64 -10.08 -14.99 By element: Atomic # 1 Polarization: -2.83 SS G_CDS: -7.14 Total: -9.97 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 0.90 Total: 3.26 kcal Atomic # 8 Polarization: -1.01 SS G_CDS: -0.63 Total: -1.64 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: -6.53 Total: -9.73 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.37 Total: -2.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -4.91 -10.08 -14.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13446734_18051908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.385 kcal (2) G-P(sol) polarization free energy of solvation -4.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds