Wall clock time and date at job start Tue Mar 9 2021 13:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76205 * 102.99645 * 2 1 4 4 C 1.38751 * 120.09690 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.97444 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.91476 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47659 * 300.00085 * 6 5 4 8 8 Si 1.86302 * 109.46649 * 179.97438 * 6 5 4 9 9 H 1.48500 * 109.46928 * 60.00479 * 8 6 5 10 10 H 1.48504 * 109.46731 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47673 * 300.00115 * 8 6 5 12 12 C 1.38228 * 120.16533 * 359.97438 * 5 4 3 13 13 C 1.38345 * 120.19067 * 359.76708 * 12 5 4 14 14 C 1.38443 * 120.02208 * 0.50586 * 13 12 5 15 15 O 1.36013 * 120.08243 * 179.74369 * 14 13 12 16 16 C 1.42898 * 116.99765 * 353.82302 * 15 14 13 17 17 Si 1.86299 * 109.47030 * 282.28857 * 16 15 14 18 18 C 1.86301 * 109.47225 * 66.69150 * 17 16 15 19 19 C 1.86306 * 109.47087 * 186.68833 * 17 16 15 20 20 C 1.86303 * 109.47346 * 306.68716 * 17 16 15 21 21 H 1.08998 * 109.47095 * 300.00095 * 1 2 3 22 22 H 1.09002 * 109.47220 * 60.00363 * 1 2 3 23 23 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.01179 * 359.95925 * 4 3 2 25 25 H 1.08998 * 109.47302 * 60.00829 * 6 5 4 26 26 H 0.96701 * 113.99381 * 300.00454 * 7 6 5 27 27 H 1.07998 * 119.90011 * 180.02562 * 12 5 4 28 28 H 1.08000 * 119.99220 * 180.28219 * 13 12 5 29 29 H 1.08992 * 109.47188 * 42.29021 * 16 15 14 30 30 H 1.08998 * 109.46924 * 162.28843 * 16 15 14 31 31 H 1.09004 * 109.47163 * 55.83459 * 18 17 16 32 32 H 1.08999 * 109.47443 * 175.84212 * 18 17 16 33 33 H 1.09006 * 109.46555 * 295.83679 * 18 17 16 34 34 H 1.08997 * 109.46808 * 59.99853 * 19 17 16 35 35 H 1.08992 * 109.47081 * 180.02562 * 19 17 16 36 36 H 1.09000 * 109.46703 * 300.00525 * 19 17 16 37 37 H 1.09000 * 109.46580 * 65.00603 * 20 17 16 38 38 H 1.08993 * 109.47127 * 185.00347 * 20 17 16 39 39 H 1.09004 * 109.46864 * 305.00393 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1971 2.6648 0.0005 5 6 1.5109 4.0112 0.0011 6 6 0.4093 5.0396 0.0011 7 8 -0.3983 4.8728 -1.1659 8 14 1.1542 6.7472 0.0026 9 1 1.9944 6.9218 -1.2093 10 1 0.0687 7.7607 0.0033 11 1 1.9930 6.9204 1.2156 12 6 2.8324 4.4164 0.0016 13 6 3.8481 3.4771 0.0065 14 6 3.5428 2.1268 0.0002 15 8 4.5405 1.2023 -0.0003 16 6 5.8771 1.6903 -0.1312 17 14 6.2082 2.1239 -1.9125 18 6 5.1504 3.5762 -2.4051 19 6 8.0060 2.5663 -2.1201 20 6 5.7994 0.6627 -2.9936 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.1637 2.3510 0.0003 25 1 -0.2071 4.9118 0.8909 26 1 0.0860 4.9732 -1.9969 27 1 3.0727 5.4693 0.0024 28 1 4.8796 3.7973 0.0115 29 1 6.0019 2.5785 0.4882 30 1 6.5781 0.9207 0.1918 31 1 5.3363 4.4081 -1.7257 32 1 5.3971 3.8766 -3.4235 33 1 4.0989 3.2935 -2.3544 34 1 8.6249 1.7166 -1.8319 35 1 8.1996 2.8204 -3.1622 36 1 8.2451 3.4211 -1.4875 37 1 4.7299 0.4594 -2.9404 38 1 6.0762 0.8846 -4.0242 39 1 6.3530 -0.2106 -2.6487 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_13446734_3095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:17 Heat of formation + Delta-G solvation = -74.148959 kcal Electronic energy + Delta-G solvation = -19247.915288 eV Core-core repulsion = 16406.180331 eV Total energy + Delta-G solvation = -2841.734957 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29976 -39.11356 -37.15249 -32.72247 -31.93276 -30.09828 -29.59822 -28.51265 -28.40823 -27.99683 -26.05248 -24.02209 -22.33454 -19.51953 -18.38422 -17.69175 -17.28481 -16.78035 -16.18381 -16.04552 -15.65290 -15.37743 -14.98146 -14.75820 -14.67306 -14.29140 -14.04263 -13.96961 -13.81318 -13.74319 -13.49207 -13.37363 -13.29682 -13.14137 -12.95032 -12.81170 -12.32770 -12.25447 -12.07308 -11.57956 -11.19187 -11.01425 -10.90241 -10.85009 -10.59246 -10.39452 -9.26642 -8.15392 0.13182 0.27806 0.61947 1.11984 1.39935 1.41255 1.47452 1.54871 1.63129 1.69232 1.88578 2.39343 2.43684 2.56980 3.43447 3.65394 3.78077 3.86979 4.08214 4.15722 4.17146 4.26946 4.45832 4.55587 4.58916 4.59404 4.60633 4.66647 4.69628 4.71594 4.76983 4.78827 4.80069 4.99495 5.17097 5.35359 5.36683 5.47178 5.55568 5.62466 6.32096 6.51559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.088 6.088 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.139 4.139 6 C -0.076 4.076 7 O -0.539 6.539 8 Si 0.947 3.053 9 H -0.250 1.250 10 H -0.254 1.254 11 H -0.250 1.250 12 C -0.092 4.092 13 C -0.182 4.182 14 C 0.146 3.854 15 O -0.281 6.281 16 C -0.247 4.247 17 Si 0.986 3.014 18 C -0.450 4.450 19 C -0.447 4.447 20 C -0.442 4.442 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.109 0.891 24 H 0.136 0.864 25 H 0.117 0.883 26 H 0.377 0.623 27 H 0.124 0.876 28 H 0.142 0.858 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 1.429 -0.758 2.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.154 5.846 3 C -0.233 4.233 4 C -0.094 4.094 5 C -0.141 4.141 6 C -0.186 4.186 7 O -0.344 6.344 8 Si 0.769 3.231 9 H -0.173 1.173 10 H -0.178 1.178 11 H -0.174 1.174 12 C -0.112 4.112 13 C -0.203 4.203 14 C 0.095 3.905 15 O -0.194 6.194 16 C -0.367 4.367 17 Si 1.183 2.817 18 C -0.558 4.558 19 C -0.555 4.555 20 C -0.550 4.550 21 H 0.103 0.897 22 H 0.104 0.896 23 H 0.128 0.872 24 H 0.154 0.846 25 H 0.135 0.865 26 H 0.224 0.776 27 H 0.142 0.858 28 H 0.159 0.841 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.893 0.852 -0.240 2.090 hybrid contribution -0.359 0.915 -0.221 1.008 sum 1.534 1.767 -0.461 2.385 Atomic orbital electron populations 1.23762 0.95477 1.07296 1.05742 1.85800 1.05193 1.01301 1.92332 1.21058 0.93159 0.98201 1.10870 1.20829 0.98111 0.91564 0.98860 1.20060 0.94307 0.94727 1.05024 1.24907 0.95528 1.06350 0.91855 1.86504 1.37637 1.94953 1.15345 0.85729 0.79651 0.75826 0.81850 1.17326 1.17770 1.17393 1.20817 0.92011 0.99150 0.99269 1.21178 1.00656 0.91428 1.06989 1.18386 0.87180 0.88258 0.96683 1.86116 1.13763 1.32261 1.87222 1.28220 0.83300 1.05076 1.20095 0.79884 0.67850 0.68348 0.65656 1.26461 1.10006 1.13487 1.05819 1.26057 1.18786 1.05539 1.05159 1.25985 1.05892 1.13795 1.09344 0.89741 0.89612 0.87243 0.84641 0.86513 0.77636 0.85821 0.84078 0.90945 0.87151 0.91004 0.90957 0.90593 0.90941 0.90669 0.91072 0.90737 0.91154 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.10 9.15 101.05 0.92 1.03 16 2 S -0.09 -0.21 22.05 -107.50 -2.37 -2.58 16 3 C -0.12 -0.30 6.12 -38.95 -0.24 -0.54 16 4 C -0.07 -0.10 8.92 -39.39 -0.35 -0.45 16 5 C -0.14 -0.09 5.39 -104.62 -0.56 -0.65 16 6 C -0.08 0.04 2.82 36.01 0.10 0.14 16 7 O -0.54 -0.04 12.77 -35.23 -0.45 -0.49 16 8 Si 0.95 -0.65 25.06 -169.99 -4.26 -4.91 16 9 H -0.25 0.16 7.11 56.52 0.40 0.56 16 10 H -0.25 -0.21 7.11 56.52 0.40 0.20 16 11 H -0.25 0.05 7.11 56.52 0.40 0.45 16 12 C -0.09 -0.04 8.67 -39.55 -0.34 -0.38 16 13 C -0.18 -0.11 5.62 -39.47 -0.22 -0.33 16 14 C 0.15 0.32 5.79 -39.07 -0.23 0.10 16 15 O -0.28 -0.62 9.17 -19.78 -0.18 -0.80 16 16 C -0.25 0.24 5.31 101.05 0.54 0.78 16 17 Si 0.99 -2.35 11.67 -169.99 -1.98 -4.33 16 18 C -0.45 0.67 7.03 101.05 0.71 1.38 16 19 C -0.45 1.01 8.65 101.05 0.87 1.88 16 20 C -0.44 0.22 8.65 101.05 0.87 1.10 16 21 H 0.08 -0.10 7.75 -51.92 -0.40 -0.50 16 22 H 0.08 -0.10 7.75 -51.92 -0.40 -0.50 16 23 H 0.11 -0.19 8.14 -51.93 -0.42 -0.62 16 24 H 0.14 0.05 5.88 -52.49 -0.31 -0.26 16 25 H 0.12 -0.14 7.96 -51.93 -0.41 -0.56 16 26 H 0.38 -1.10 8.70 45.56 0.40 -0.70 16 27 H 0.12 -0.14 4.86 -52.49 -0.26 -0.39 16 28 H 0.14 -0.23 4.23 -52.49 -0.22 -0.45 16 29 H 0.07 -0.15 6.08 -51.93 -0.32 -0.47 16 30 H 0.11 -0.22 7.96 -51.93 -0.41 -0.64 16 31 H 0.07 -0.16 6.52 -51.93 -0.34 -0.50 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.02 6.50 -51.93 -0.34 -0.36 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 35 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 38 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 39 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 LS Contribution 322.23 15.07 4.86 4.86 Total: 0.00 -5.05 322.23 -7.44 -12.49 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: -5.13 Total: -8.29 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 2.08 Total: 4.06 kcal Atomic # 8 Polarization: -0.66 SS G_CDS: -0.63 Total: -1.29 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: -6.25 Total: -9.24 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.37 Total: -2.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -5.05 -7.44 -12.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13446734_3095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.657 kcal (2) G-P(sol) polarization free energy of solvation -5.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds