Wall clock time and date at job start Tue Mar 9 2021 13:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76205 * 102.99645 * 2 1 4 4 C 1.38751 * 120.09690 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.97444 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.91476 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47659 * 300.00085 * 6 5 4 8 8 Si 1.86302 * 109.46649 * 179.97438 * 6 5 4 9 9 H 1.48500 * 109.46928 * 60.00479 * 8 6 5 10 10 H 1.48504 * 109.46731 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47673 * 300.00115 * 8 6 5 12 12 C 1.38228 * 120.16533 * 359.97438 * 5 4 3 13 13 C 1.38345 * 120.19067 * 359.76708 * 12 5 4 14 14 C 1.38443 * 120.02208 * 0.50586 * 13 12 5 15 15 O 1.36013 * 120.08243 * 179.74369 * 14 13 12 16 16 C 1.42898 * 116.99765 * 353.82302 * 15 14 13 17 17 Si 1.86299 * 109.47030 * 282.28857 * 16 15 14 18 18 C 1.86301 * 109.47225 * 66.69150 * 17 16 15 19 19 C 1.86306 * 109.47087 * 186.68833 * 17 16 15 20 20 C 1.86303 * 109.47346 * 306.68716 * 17 16 15 21 21 H 1.08998 * 109.47095 * 300.00095 * 1 2 3 22 22 H 1.09002 * 109.47220 * 60.00363 * 1 2 3 23 23 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.01179 * 359.95925 * 4 3 2 25 25 H 1.08998 * 109.47302 * 60.00829 * 6 5 4 26 26 H 0.96701 * 113.99381 * 300.00454 * 7 6 5 27 27 H 1.07998 * 119.90011 * 180.02562 * 12 5 4 28 28 H 1.08000 * 119.99220 * 180.28219 * 13 12 5 29 29 H 1.08992 * 109.47188 * 42.29021 * 16 15 14 30 30 H 1.08998 * 109.46924 * 162.28843 * 16 15 14 31 31 H 1.09004 * 109.47163 * 55.83459 * 18 17 16 32 32 H 1.08999 * 109.47443 * 175.84212 * 18 17 16 33 33 H 1.09006 * 109.46555 * 295.83679 * 18 17 16 34 34 H 1.08997 * 109.46808 * 59.99853 * 19 17 16 35 35 H 1.08992 * 109.47081 * 180.02562 * 19 17 16 36 36 H 1.09000 * 109.46703 * 300.00525 * 19 17 16 37 37 H 1.09000 * 109.46580 * 65.00603 * 20 17 16 38 38 H 1.08993 * 109.47127 * 185.00347 * 20 17 16 39 39 H 1.09004 * 109.46864 * 305.00393 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1971 2.6648 0.0005 5 6 1.5109 4.0112 0.0011 6 6 0.4093 5.0396 0.0011 7 8 -0.3983 4.8728 -1.1659 8 14 1.1542 6.7472 0.0026 9 1 1.9944 6.9218 -1.2093 10 1 0.0687 7.7607 0.0033 11 1 1.9930 6.9204 1.2156 12 6 2.8324 4.4164 0.0016 13 6 3.8481 3.4771 0.0065 14 6 3.5428 2.1268 0.0002 15 8 4.5405 1.2023 -0.0003 16 6 5.8771 1.6903 -0.1312 17 14 6.2082 2.1239 -1.9125 18 6 5.1504 3.5762 -2.4051 19 6 8.0060 2.5663 -2.1201 20 6 5.7994 0.6627 -2.9936 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.1637 2.3510 0.0003 25 1 -0.2071 4.9118 0.8909 26 1 0.0860 4.9732 -1.9969 27 1 3.0727 5.4693 0.0024 28 1 4.8796 3.7973 0.0115 29 1 6.0019 2.5785 0.4882 30 1 6.5781 0.9207 0.1918 31 1 5.3363 4.4081 -1.7257 32 1 5.3971 3.8766 -3.4235 33 1 4.0989 3.2935 -2.3544 34 1 8.6249 1.7166 -1.8319 35 1 8.1996 2.8204 -3.1622 36 1 8.2451 3.4211 -1.4875 37 1 4.7299 0.4594 -2.9404 38 1 6.0762 0.8846 -4.0242 39 1 6.3530 -0.2106 -2.6487 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_13446734_3095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:16 Heat of formation + Delta-G solvation = -66.977413 kcal Electronic energy + Delta-G solvation = -19247.604307 eV Core-core repulsion = 16406.180331 eV Total energy + Delta-G solvation = -2841.423975 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.097 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32279 -39.11969 -37.13969 -32.74591 -31.94203 -30.03310 -29.49996 -28.39293 -28.29128 -27.91506 -26.02610 -24.05267 -22.34652 -19.53827 -18.37958 -17.73434 -17.30501 -16.77690 -16.15445 -16.03600 -15.64290 -15.35802 -14.99160 -14.72689 -14.63721 -14.18055 -13.90869 -13.88546 -13.75016 -13.70310 -13.43695 -13.27960 -13.18100 -13.02724 -12.88132 -12.79152 -12.29728 -12.21985 -12.04977 -11.56125 -11.25997 -10.89525 -10.82733 -10.78664 -10.57975 -10.36142 -9.29383 -8.28146 0.08013 0.23958 0.55826 1.17604 1.46724 1.50407 1.52015 1.56459 1.79137 1.85450 1.92375 2.45142 2.49838 2.59597 3.52520 3.67945 3.79888 3.90151 4.14572 4.22738 4.25493 4.29999 4.45867 4.62170 4.68274 4.72308 4.76214 4.77298 4.79753 4.82256 4.83171 4.84261 4.88122 4.99359 5.14312 5.33428 5.52342 5.60409 5.60840 5.64434 6.32338 6.69458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.139 6.139 3 C -0.135 4.135 4 C -0.076 4.076 5 C -0.141 4.141 6 C -0.075 4.075 7 O -0.553 6.553 8 Si 0.977 3.023 9 H -0.247 1.247 10 H -0.276 1.276 11 H -0.254 1.254 12 C -0.096 4.096 13 C -0.183 4.183 14 C 0.133 3.867 15 O -0.301 6.301 16 C -0.267 4.267 17 Si 1.051 2.949 18 C -0.462 4.462 19 C -0.452 4.452 20 C -0.463 4.463 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.121 0.879 24 H 0.141 0.859 25 H 0.122 0.878 26 H 0.388 0.612 27 H 0.141 0.859 28 H 0.163 0.837 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 2.508 -0.698 3.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.103 5.897 3 C -0.248 4.248 4 C -0.099 4.099 5 C -0.143 4.143 6 C -0.185 4.185 7 O -0.360 6.360 8 Si 0.801 3.199 9 H -0.170 1.170 10 H -0.202 1.202 11 H -0.178 1.178 12 C -0.117 4.117 13 C -0.203 4.203 14 C 0.082 3.918 15 O -0.214 6.214 16 C -0.386 4.386 17 Si 1.243 2.757 18 C -0.569 4.569 19 C -0.561 4.561 20 C -0.569 4.569 21 H 0.109 0.891 22 H 0.110 0.890 23 H 0.139 0.861 24 H 0.159 0.841 25 H 0.140 0.860 26 H 0.237 0.763 27 H 0.158 0.842 28 H 0.180 0.820 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.406 1.910 -0.195 3.078 hybrid contribution -0.542 0.564 -0.255 0.823 sum 1.865 2.475 -0.450 3.131 Atomic orbital electron populations 1.23782 0.92633 1.08233 1.06325 1.85858 1.08485 1.02695 1.92711 1.21187 0.93857 0.97815 1.11896 1.20953 0.98209 0.91844 0.98940 1.20221 0.94872 0.94613 1.04607 1.24980 0.95329 1.06225 0.92009 1.86474 1.38373 1.94988 1.16136 0.85295 0.78518 0.74445 0.81599 1.16993 1.20189 1.17794 1.21069 0.91888 0.99984 0.98722 1.21435 1.01854 0.90780 1.06229 1.18592 0.87201 0.88940 0.97116 1.86094 1.14842 1.33097 1.87362 1.28597 0.82136 1.05950 1.21903 0.78907 0.67255 0.66129 0.63370 1.26587 1.09362 1.14490 1.06430 1.26096 1.18516 1.06024 1.05422 1.26279 1.04687 1.15465 1.10481 0.89072 0.89032 0.86094 0.84116 0.85988 0.76274 0.84204 0.82025 0.89634 0.86406 0.89844 0.90644 0.91920 0.90775 0.90617 0.90183 0.92492 0.90956 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.11 9.15 113.37 1.04 1.15 16 2 S -0.14 -0.89 22.05 -56.49 -1.25 -2.14 16 3 C -0.13 -0.84 6.12 22.68 0.14 -0.70 16 4 C -0.08 -0.25 8.92 22.39 0.20 -0.05 16 5 C -0.14 -0.16 5.39 -19.87 -0.11 -0.26 16 6 C -0.08 0.10 2.82 71.24 0.20 0.30 16 7 O -0.55 0.05 12.77 -148.98 -1.90 -1.85 16 8 Si 0.98 -1.98 25.06 68.60 1.72 -0.26 16 9 H -0.25 0.64 7.11 99.48 0.71 1.35 16 10 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 11 H -0.25 0.36 7.11 99.48 0.71 1.06 16 12 C -0.10 -0.01 8.67 22.29 0.19 0.18 16 13 C -0.18 -0.15 5.62 22.34 0.13 -0.03 16 14 C 0.13 0.69 5.79 22.60 0.13 0.82 16 15 O -0.30 -1.64 9.17 -93.70 -0.86 -2.50 16 16 C -0.27 0.53 5.31 113.37 0.60 1.13 16 17 Si 1.05 -5.19 11.67 68.60 0.80 -4.39 16 18 C -0.46 1.62 7.03 113.37 0.80 2.41 16 19 C -0.45 2.55 8.65 113.37 0.98 3.53 16 20 C -0.46 -0.10 8.65 113.37 0.98 0.88 16 21 H 0.09 -0.19 7.75 -2.39 -0.02 -0.21 16 22 H 0.09 -0.18 7.75 -2.39 -0.02 -0.20 16 23 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 24 H 0.14 0.18 5.88 -2.91 -0.02 0.16 16 25 H 0.12 -0.33 7.96 -2.39 -0.02 -0.35 16 26 H 0.39 -2.36 8.70 -74.06 -0.64 -3.00 16 27 H 0.14 -0.51 4.86 -2.91 -0.01 -0.52 16 28 H 0.16 -0.72 4.23 -2.91 -0.01 -0.73 16 29 H 0.09 -0.43 6.08 -2.39 -0.01 -0.45 16 30 H 0.12 -0.47 7.96 -2.39 -0.02 -0.49 16 31 H 0.08 -0.49 6.52 -2.39 -0.02 -0.51 16 32 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 33 H 0.06 -0.01 6.50 -2.38 -0.02 -0.03 16 34 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 35 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 36 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 37 H 0.06 0.21 7.96 -2.39 -0.02 0.19 16 38 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 39 H 0.07 0.02 7.96 -2.39 -0.02 0.01 16 Total: 0.00 -12.46 322.23 4.95 -7.51 By element: Atomic # 1 Polarization: -6.89 SS G_CDS: 1.16 Total: -5.73 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.28 Total: 9.36 kcal Atomic # 8 Polarization: -1.59 SS G_CDS: -2.76 Total: -4.35 kcal Atomic # 14 Polarization: -7.17 SS G_CDS: 2.52 Total: -4.65 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -1.25 Total: -2.14 kcal Total: -12.46 4.95 -7.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13446734_3095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.467 kcal (2) G-P(sol) polarization free energy of solvation -12.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds