Wall clock time and date at job start Tue Mar 9 2021 14:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52995 * 109.47643 * 190.93802 * 6 5 4 8 8 O 1.42901 * 109.47074 * 293.54788 * 7 6 5 9 9 C 1.35900 * 117.00200 * 179.97438 * 8 7 6 10 10 C 1.38689 * 120.04731 * 359.72762 * 9 8 7 11 11 C 1.38282 * 119.92828 * 179.72727 * 10 9 8 12 12 Cl 1.73606 * 119.98397 * 180.24960 * 11 10 9 13 13 C 1.38367 * 120.03276 * 0.54104 * 11 10 9 14 14 C 1.38269 * 120.09382 * 359.73096 * 13 11 10 15 15 C 1.38123 * 120.06969 * 359.97438 * 14 13 11 16 16 C 1.50703 * 120.01555 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47204 * 105.01923 * 16 15 14 18 18 Si 1.86293 * 109.46956 * 345.02010 * 16 15 14 19 19 H 1.48502 * 109.47326 * 60.00106 * 18 16 15 20 20 H 1.48500 * 109.47226 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47518 * 300.00115 * 18 16 15 22 22 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 30 30 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 31 31 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 32 32 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 33 33 H 1.09004 * 109.47418 * 70.93608 * 6 5 4 34 34 H 1.09007 * 109.46916 * 53.54343 * 7 6 5 35 35 H 1.09005 * 109.47687 * 173.54545 * 7 6 5 36 36 H 1.08001 * 120.03511 * 359.97438 * 10 9 8 37 37 H 1.07996 * 119.94913 * 179.70543 * 13 11 10 38 38 H 1.08000 * 119.96034 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.47400 * 225.01717 * 16 15 14 40 40 H 0.96699 * 113.99879 * 300.00478 * 17 16 15 41 41 H 1.08996 * 111.41269 * 283.05303 * 22 6 5 42 42 H 1.09006 * 111.49251 * 158.06559 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1417 -2.9771 -1.5067 8 8 5.3027 -3.5593 -0.9107 9 6 5.8104 -4.6706 -1.5059 10 6 5.2004 -5.1929 -2.6366 11 6 5.7225 -6.3205 -3.2436 12 17 4.9638 -6.9718 -4.6628 13 6 6.8456 -6.9333 -2.7168 14 6 7.4514 -6.4168 -1.5863 15 6 6.9370 -5.2873 -0.9803 16 6 7.5978 -4.7257 0.2522 17 8 8.3275 -3.5467 -0.0938 18 14 8.7648 -5.9921 0.9627 19 1 9.8021 -6.3298 -0.0449 20 1 9.4156 -5.4390 2.1775 21 1 8.0067 -7.2173 1.3223 22 6 2.5568 -1.0142 -1.4447 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 3.2797 -0.4330 2.0151 30 1 1.7543 -1.3786 2.0840 31 1 4.1055 -2.5196 1.2701 32 1 2.5407 -3.0054 0.5873 33 1 4.5675 -1.0680 -0.6042 34 1 3.3305 -3.7052 -1.5088 35 1 4.3683 -2.6826 -2.5315 36 1 4.3210 -4.7173 -3.0450 37 1 7.2493 -7.8166 -3.1892 38 1 8.3277 -6.8972 -1.1767 39 1 6.8365 -4.4777 0.9917 40 1 9.0233 -3.6929 -0.7493 41 1 1.8198 -1.7216 -1.8246 42 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_13616168_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:00:38 Heat of formation + Delta-G solvation = -96.268354 kcal Electronic energy + Delta-G solvation = -22044.984647 eV Core-core repulsion = 18753.338482 eV Total energy + Delta-G solvation = -3291.646165 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54255 -39.17918 -37.98725 -37.17513 -36.55457 -32.63564 -31.39806 -30.45308 -29.11408 -28.38032 -27.32517 -26.66487 -24.34605 -23.33932 -22.64239 -20.71507 -19.51941 -18.26523 -17.40195 -17.18143 -16.80184 -16.30954 -16.06146 -15.59391 -15.34345 -15.22102 -14.91123 -14.53486 -14.20605 -13.99438 -13.84841 -13.79065 -13.51809 -13.48103 -13.37277 -13.18217 -12.87250 -12.85791 -12.49089 -12.25788 -12.18702 -12.16320 -12.01560 -11.92120 -11.65456 -11.56117 -11.36483 -10.76850 -10.46191 -10.37984 -10.27599 -10.02796 -9.31991 -0.12091 0.19023 0.97902 1.15870 1.43282 1.53673 1.68871 1.91919 2.00522 2.02943 2.16766 2.39558 2.64347 3.52044 3.58808 3.74320 3.78310 3.91465 3.98034 4.05386 4.06568 4.28597 4.38360 4.42282 4.54140 4.55891 4.69243 4.69848 4.75185 4.81281 4.83784 4.85210 4.85981 4.92798 5.08061 5.11721 5.13609 5.21738 5.34421 5.43501 5.50582 5.53593 5.60279 5.64462 6.27951 6.73895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.040 2.960 3 C -0.457 4.457 4 C -0.415 4.415 5 C -0.110 4.110 6 C -0.082 4.082 7 C 0.057 3.943 8 O -0.309 6.309 9 C 0.159 3.841 10 C -0.210 4.210 11 C 0.000 4.000 12 Cl -0.065 7.065 13 C -0.147 4.147 14 C -0.076 4.076 15 C -0.159 4.159 16 C -0.073 4.073 17 O -0.550 6.550 18 Si 0.984 3.016 19 H -0.235 1.235 20 H -0.275 1.275 21 H -0.255 1.255 22 C -0.400 4.400 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.109 0.891 40 H 0.386 0.614 41 H 0.088 0.912 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 0.333 -0.421 0.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.234 2.766 3 C -0.565 4.565 4 C -0.500 4.500 5 C -0.147 4.147 6 C -0.100 4.100 7 C -0.017 4.017 8 O -0.222 6.222 9 C 0.112 3.888 10 C -0.230 4.230 11 C -0.026 4.026 12 Cl -0.036 7.036 13 C -0.166 4.166 14 C -0.094 4.094 15 C -0.160 4.160 16 C -0.183 4.183 17 O -0.356 6.356 18 Si 0.806 3.194 19 H -0.158 1.158 20 H -0.200 1.200 21 H -0.178 1.178 22 C -0.485 4.485 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.127 0.873 40 H 0.235 0.765 41 H 0.107 0.893 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.584 0.074 0.395 0.709 hybrid contribution -0.182 -0.126 -0.902 0.929 sum -0.765 -0.052 -0.507 0.920 Atomic orbital electron populations 1.26152 1.20749 1.04631 1.04624 0.79418 0.65898 0.65674 0.65659 1.26196 1.06601 1.19026 1.04640 1.26717 1.05547 1.06547 1.11153 1.21706 1.00051 0.98616 0.94369 1.21694 0.99028 0.94761 0.94530 1.23239 0.85450 0.95508 0.97505 1.86188 1.44562 1.38573 1.52855 1.18763 0.92398 0.86802 0.90874 1.21270 1.04153 0.99161 0.98380 1.20846 0.95727 0.95555 0.90513 1.98397 1.81257 1.85490 1.38440 1.21169 0.95566 1.02263 0.97613 1.21144 0.99596 0.94070 0.94546 1.19965 0.97027 0.98064 1.00970 1.24970 1.00939 0.95748 0.96601 1.86534 1.51782 1.32444 1.64869 0.85250 0.78338 0.76211 0.79584 1.15849 1.19981 1.17847 1.26960 1.02228 1.08113 1.11181 0.90879 0.91173 0.91063 0.91125 0.91414 0.90877 0.90968 0.90275 0.92987 0.91934 0.90334 0.91149 0.91274 0.83480 0.82701 0.82515 0.87332 0.76516 0.89305 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.93 8.65 113.37 0.98 2.91 16 2 Si 1.04 -6.01 13.35 68.60 0.92 -5.10 16 3 C -0.46 1.54 8.65 113.37 0.98 2.52 16 4 C -0.42 0.73 5.85 72.72 0.43 1.15 16 5 C -0.11 -0.05 5.21 31.52 0.16 0.11 16 6 C -0.08 0.05 2.40 -9.54 -0.02 0.02 16 7 C 0.06 0.04 4.11 71.98 0.30 0.34 16 8 O -0.31 -1.61 9.25 -92.42 -0.85 -2.46 16 9 C 0.16 0.71 6.66 22.50 0.15 0.86 16 10 C -0.21 -0.66 8.82 22.39 0.20 -0.47 16 11 C 0.00 0.00 6.32 22.31 0.14 0.14 16 12 Cl -0.06 -0.18 28.95 -2.72 -0.08 -0.26 16 13 C -0.15 -0.07 9.83 22.31 0.22 0.15 16 14 C -0.08 0.02 8.65 22.25 0.19 0.21 16 15 C -0.16 -0.40 5.27 -19.76 -0.10 -0.50 16 16 C -0.07 -0.11 2.38 71.24 0.17 0.06 16 17 O -0.55 -1.63 12.88 -148.98 -1.92 -3.55 16 18 Si 0.98 -1.31 25.49 68.60 1.75 0.44 16 19 H -0.24 0.91 6.73 99.48 0.67 1.58 16 20 H -0.27 -0.70 7.11 99.48 0.71 0.01 16 21 H -0.25 0.07 7.11 99.48 0.71 0.78 16 22 C -0.40 1.75 5.30 73.05 0.39 2.13 16 23 H 0.07 -0.33 7.96 -2.39 -0.02 -0.34 16 24 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 25 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 26 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 27 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.07 -0.06 8.04 -2.39 -0.02 -0.08 16 30 H 0.08 -0.16 8.04 -2.39 -0.02 -0.18 16 31 H 0.05 0.20 8.12 -2.39 -0.02 0.18 16 32 H 0.06 -0.01 8.04 -2.39 -0.02 -0.02 16 33 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.07 -0.07 7.58 -2.38 -0.02 -0.08 16 35 H 0.07 -0.03 7.68 -2.38 -0.02 -0.05 16 36 H 0.15 0.12 6.30 -2.91 -0.02 0.10 16 37 H 0.16 -0.51 8.06 -2.91 -0.02 -0.54 16 38 H 0.16 -0.74 4.89 -2.91 -0.01 -0.75 16 39 H 0.11 0.30 7.83 -2.39 -0.02 0.28 16 40 H 0.39 -1.66 8.70 -74.06 -0.64 -2.30 16 41 H 0.09 -0.48 8.03 -2.39 -0.02 -0.50 16 42 H 0.09 -0.46 8.06 -2.38 -0.02 -0.47 16 Total: 0.00 -9.99 354.24 5.07 -4.93 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: 1.08 Total: -3.65 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.18 Total: 9.65 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: -2.77 Total: -6.01 kcal Atomic # 14 Polarization: -7.32 SS G_CDS: 2.66 Total: -4.66 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -9.99 5.07 -4.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13616168_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.342 kcal (2) G-P(sol) polarization free energy of solvation -9.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds