Wall clock time and date at job start Tue Mar 9 2021 14:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 C 1.50699 * 109.47447 * 120.00018 * 2 1 3 5 5 C 1.38242 * 119.94354 * 300.02377 * 4 2 1 6 6 C 1.38166 * 120.05422 * 179.74038 * 5 4 2 7 7 C 1.38716 * 119.94490 * 0.53478 * 6 5 4 8 8 O 1.35900 * 120.05639 * 179.71962 * 7 6 5 9 9 C 1.42901 * 117.00200 * 359.72293 * 8 7 6 10 10 C 1.52995 * 109.47074 * 179.97438 * 9 8 7 11 11 C 1.53566 * 109.47643 * 293.54788 * 10 9 8 12 12 C 1.55147 * 111.29010 * 190.93802 * 11 10 9 13 13 Si 1.89333 * 101.34989 * 28.58791 * 12 11 10 14 14 C 1.86301 * 111.45813 * 114.13512 * 13 12 11 15 15 C 1.86297 * 111.45926 * 239.08100 * 13 12 11 16 16 C 1.56066 * 109.48114 * 173.43596 * 10 9 8 17 17 C 1.38751 * 119.88265 * 359.44621 * 7 6 5 18 18 C 1.50705 * 120.02621 * 180.25528 * 17 7 6 19 19 O 1.42903 * 109.46971 * 285.00081 * 18 17 7 20 20 Si 1.86294 * 109.47492 * 164.99907 * 18 17 7 21 21 H 1.48497 * 109.47021 * 59.99755 * 20 18 17 22 22 H 1.48496 * 109.47263 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46959 * 300.00270 * 20 18 17 24 24 C 1.38122 * 119.94922 * 0.27391 * 17 7 6 25 25 H 1.08999 * 109.46651 * 299.99500 * 1 2 3 26 26 H 1.09001 * 109.47015 * 60.00108 * 1 2 3 27 27 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47107 * 240.00562 * 2 1 3 29 29 H 1.09001 * 109.47001 * 59.99898 * 3 2 1 30 30 H 1.08997 * 109.47577 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47329 * 300.00595 * 3 2 1 32 32 H 1.07999 * 119.97576 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.02918 * 180.25095 * 6 5 4 34 34 H 1.09007 * 109.46885 * 60.00180 * 9 8 7 35 35 H 1.09005 * 109.47062 * 300.00380 * 9 8 7 36 36 H 1.09004 * 109.46872 * 53.55317 * 10 9 8 37 37 H 1.09003 * 109.12206 * 70.45930 * 11 10 9 38 38 H 1.08996 * 109.12221 * 311.42400 * 11 10 9 39 39 H 1.09002 * 111.04815 * 270.56954 * 12 11 10 40 40 H 1.08999 * 111.04827 * 146.61077 * 12 11 10 41 41 H 1.09002 * 109.47148 * 185.06678 * 14 13 12 42 42 H 1.09001 * 109.46900 * 65.06830 * 14 13 12 43 43 H 1.09004 * 109.47198 * 305.06808 * 14 13 12 44 44 H 1.08995 * 109.47233 * 294.93123 * 15 13 12 45 45 H 1.08997 * 109.47080 * 54.93469 * 15 13 12 46 46 H 1.08998 * 109.47258 * 174.93080 * 15 13 12 47 47 H 1.08996 * 111.41269 * 43.11689 * 16 10 9 48 48 H 1.09006 * 111.49251 * 278.12945 * 16 10 9 49 49 H 1.09003 * 109.46738 * 44.99742 * 18 17 7 50 50 H 0.96704 * 114.00342 * 59.99888 * 19 18 17 51 51 H 1.07997 * 119.97122 * 180.02562 * 24 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6974 -0.2374 2.4855 6 6 2.1523 -0.8900 3.6151 7 6 2.9550 -2.0143 3.4892 8 8 3.4084 -2.6547 4.5988 9 6 3.0245 -2.1117 5.8636 10 6 3.6246 -2.9604 6.9862 11 6 2.9868 -4.3573 6.9689 12 6 3.3558 -5.1609 8.2438 13 14 3.6040 -3.7688 9.5029 14 6 2.3158 -3.8283 10.8474 15 6 5.3251 -3.7933 10.2155 16 6 3.3468 -2.2764 8.3612 17 6 3.2895 -2.4872 2.2283 18 6 4.1566 -3.7118 2.0878 19 8 5.5116 -3.3732 2.3902 20 14 4.0511 -4.3503 0.3409 21 1 4.5206 -3.3008 -0.5990 22 1 4.9051 -5.5573 0.2026 23 1 2.6430 -4.7021 0.0266 24 6 2.8274 -1.8346 1.1021 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.0764 0.6408 2.5831 33 1 1.8870 -0.5225 4.5954 34 1 1.9376 -2.1166 5.9462 35 1 3.3906 -1.0883 5.9459 36 1 4.7008 -3.0505 6.8380 37 1 3.3381 -4.8994 6.0910 38 1 1.9032 -4.2543 6.9128 39 1 4.2767 -5.7255 8.0977 40 1 2.5390 -5.8179 8.5424 41 1 2.4331 -2.9643 11.5015 42 1 2.4384 -4.7428 11.4278 43 1 1.3221 -3.8127 10.3996 44 1 5.4667 -4.7075 10.7919 45 1 6.0541 -3.7576 9.4060 46 1 5.4615 -2.9291 10.8656 47 1 2.3251 -1.9015 8.4200 48 1 4.0702 -1.4875 8.5682 49 1 3.8120 -4.4821 2.7777 50 1 5.6415 -3.0328 3.2860 51 1 3.0871 -2.2026 0.1206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_13942222_18051908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:00:55 Heat of formation + Delta-G solvation = -107.040442 kcal Electronic energy + Delta-G solvation = -25785.465710 eV Core-core repulsion = 22386.539368 eV Total energy + Delta-G solvation = -3398.926342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.188 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.55832 -39.40729 -37.87509 -36.78255 -35.47760 -32.66066 -30.85878 -29.99380 -29.11022 -28.38037 -27.99405 -27.28360 -26.62557 -24.30604 -23.73963 -22.98376 -20.77872 -20.58493 -19.26122 -18.19718 -17.61521 -17.02539 -16.53744 -16.03108 -15.84888 -15.57146 -15.51284 -15.29530 -14.84373 -14.49577 -14.30266 -14.20824 -14.06026 -13.84297 -13.80339 -13.57798 -13.47796 -13.43852 -13.22061 -13.16660 -12.95106 -12.85252 -12.56756 -12.28887 -12.23920 -12.15181 -11.98387 -11.89638 -11.87010 -11.65224 -11.55052 -11.35757 -11.12242 -11.00316 -10.76813 -10.45305 -10.27258 -9.98042 -9.06072 0.20129 0.35401 1.16190 1.44529 1.47504 1.70043 1.90118 2.00846 2.03176 2.21453 2.61897 2.64852 3.54526 3.66393 3.75132 3.81999 3.95166 3.97685 4.06141 4.12379 4.16252 4.28319 4.30411 4.35885 4.43574 4.49161 4.55157 4.58800 4.67194 4.72901 4.76686 4.79374 4.81163 4.82205 4.83983 4.84858 4.85716 4.98181 5.03077 5.08677 5.12926 5.22061 5.24146 5.28764 5.35269 5.36751 5.37202 5.48577 5.52931 5.60006 5.63353 5.64390 5.75106 6.38720 6.60367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.112 4.112 5 C -0.073 4.073 6 C -0.206 4.206 7 C 0.129 3.871 8 O -0.323 6.323 9 C 0.062 3.938 10 C -0.082 4.082 11 C -0.110 4.110 12 C -0.416 4.416 13 Si 1.041 2.959 14 C -0.456 4.456 15 C -0.458 4.458 16 C -0.399 4.399 17 C -0.158 4.158 18 C -0.084 4.084 19 O -0.551 6.551 20 Si 1.032 2.968 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.242 1.242 24 C -0.098 4.098 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.375 0.625 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 2.143 3.242 4.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.113 4.113 5 C -0.091 4.091 6 C -0.225 4.225 7 C 0.084 3.916 8 O -0.237 6.237 9 C -0.012 4.012 10 C -0.100 4.100 11 C -0.147 4.147 12 C -0.500 4.500 13 Si 1.234 2.766 14 C -0.563 4.563 15 C -0.565 4.565 16 C -0.483 4.483 17 C -0.159 4.159 18 C -0.192 4.192 19 O -0.358 6.358 20 Si 0.853 3.147 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.165 1.165 24 C -0.116 4.116 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.096 0.904 50 H 0.224 0.776 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.431 1.455 1.870 3.395 hybrid contribution -0.084 0.418 1.048 1.131 sum -2.515 1.873 2.918 4.284 Atomic orbital electron populations 1.21859 0.93552 1.01963 1.02653 1.20140 0.96531 0.96272 0.94552 1.21855 1.00829 0.94699 1.02653 1.19931 0.99304 0.96231 0.95791 1.21037 0.97863 0.99191 0.90965 1.21490 1.02700 0.97463 1.00845 1.18874 0.94240 0.92077 0.86448 1.86026 1.70801 1.53477 1.13381 1.23170 1.00092 0.98025 0.79921 1.21703 1.01088 0.94189 0.93047 1.21708 1.00412 0.94299 0.98317 1.26725 1.04224 1.10153 1.08940 0.79400 0.65905 0.65773 0.65498 1.26178 1.12413 1.04573 1.13167 1.26200 1.18747 1.04575 1.06955 1.26929 1.05293 1.12140 1.03971 1.19683 1.04197 1.00886 0.91123 1.25236 0.82945 0.96293 1.14698 1.86638 1.24637 1.86994 1.37520 0.84244 0.80180 0.78335 0.71956 1.18436 1.19623 1.16499 1.21017 0.97321 0.95628 0.97637 0.92020 0.91459 0.92979 0.90451 0.92012 0.93236 0.91441 0.83957 0.83694 0.91426 0.91121 0.89941 0.92993 0.92162 0.90940 0.90497 0.90900 0.91293 0.91119 0.91255 0.91288 0.90906 0.89364 0.89258 0.90406 0.77628 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.21 9.01 71.98 0.65 0.86 16 2 C -0.06 -0.01 3.09 -11.54 -0.04 -0.05 16 3 C -0.14 0.14 9.01 71.98 0.65 0.79 16 4 C -0.11 -0.36 4.78 -19.85 -0.09 -0.46 16 5 C -0.07 -0.12 8.70 22.25 0.19 0.07 16 6 C -0.21 -0.47 9.04 22.37 0.20 -0.27 16 7 C 0.13 0.63 6.62 22.51 0.15 0.78 16 8 O -0.32 -1.10 8.83 -92.42 -0.82 -1.92 16 9 C 0.06 -0.07 4.11 71.98 0.30 0.22 16 10 C -0.08 0.21 2.40 -9.54 -0.02 0.19 16 11 C -0.11 0.08 5.21 31.52 0.16 0.25 16 12 C -0.42 1.10 5.85 72.72 0.43 1.53 16 13 Si 1.04 -7.02 13.35 68.60 0.92 -6.10 16 14 C -0.46 2.16 8.65 113.37 0.98 3.14 16 15 C -0.46 1.96 8.65 113.37 0.98 2.94 16 16 C -0.40 2.33 5.30 73.05 0.39 2.72 16 17 C -0.16 -0.97 5.28 -19.77 -0.10 -1.07 16 18 C -0.08 -0.46 2.33 71.24 0.17 -0.30 16 19 O -0.55 -3.96 12.65 -148.98 -1.89 -5.84 16 20 Si 1.03 4.59 25.75 68.60 1.77 6.35 16 21 H -0.26 -1.41 6.73 99.48 0.67 -0.74 16 22 H -0.27 -1.78 7.11 99.48 0.71 -1.07 16 23 H -0.24 -0.72 7.11 99.48 0.71 -0.02 16 24 C -0.10 -0.53 8.28 22.25 0.18 -0.35 16 25 H 0.06 -0.14 7.38 -2.39 -0.02 -0.16 16 26 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.08 0.01 7.87 -2.39 -0.02 -0.01 16 29 H 0.06 -0.12 7.38 -2.39 -0.02 -0.14 16 30 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.14 -0.32 7.09 -2.91 -0.02 -0.34 16 33 H 0.15 -0.25 6.30 -2.91 -0.02 -0.27 16 34 H 0.07 -0.15 7.58 -2.38 -0.02 -0.17 16 35 H 0.07 -0.19 7.67 -2.38 -0.02 -0.21 16 36 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.05 0.13 8.12 -2.39 -0.02 0.11 16 38 H 0.06 -0.05 8.04 -2.39 -0.02 -0.07 16 39 H 0.07 -0.13 8.04 -2.39 -0.02 -0.15 16 40 H 0.08 -0.19 8.04 -2.39 -0.02 -0.21 16 41 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 42 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 43 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 44 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 45 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 46 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 47 H 0.09 -0.59 8.03 -2.39 -0.02 -0.61 16 48 H 0.09 -0.61 8.06 -2.38 -0.02 -0.63 16 49 H 0.08 0.33 7.83 -2.39 -0.02 0.31 16 50 H 0.37 1.19 8.61 -74.05 -0.64 0.56 16 51 H 0.13 0.50 4.77 -2.91 -0.01 0.48 16 Total: 0.00 -8.46 397.14 6.11 -2.36 By element: Atomic # 1 Polarization: -6.80 SS G_CDS: 0.96 Total: -5.84 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.17 Total: 11.00 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -2.70 Total: -7.76 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.68 Total: 0.25 kcal Total: -8.46 6.11 -2.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_13942222_18051908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.684 kcal (2) G-P(sol) polarization free energy of solvation -8.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds