Wall clock time and date at job start Tue Mar 9 2021 14:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86297 * 111.24103 * 2 1 4 4 C 1.89329 * 111.45651 * 125.06911 * 2 1 3 5 5 C 1.55153 * 101.35050 * 114.13702 * 4 2 1 6 6 C 1.53574 * 111.28550 * 28.58484 * 5 4 2 7 7 C 1.53008 * 109.46821 * 190.93890 * 6 5 4 8 8 O 1.42894 * 109.47241 * 293.54803 * 7 6 5 9 9 C 1.35981 * 117.00285 * 180.02562 * 8 7 6 10 10 C 1.38660 * 119.98094 * 359.97438 * 9 8 7 11 11 C 1.38259 * 120.07992 * 179.97438 * 10 9 8 12 12 C 1.38480 * 120.10343 * 0.02741 * 11 10 9 13 13 O 1.36599 * 131.47654 * 180.02562 * 12 11 10 14 14 C 1.43984 * 105.47801 * 162.68765 * 13 12 11 15 15 O 1.43987 * 103.74252 * 27.14530 * 14 13 12 16 16 C 1.36500 * 105.49938 * 332.84151 * 15 14 13 17 17 C 1.38488 * 131.47622 * 197.66073 * 16 15 14 18 18 C 1.50704 * 120.00587 * 359.93289 * 17 16 15 19 19 O 1.42895 * 109.46922 * 303.76567 * 18 17 16 20 20 Si 1.86296 * 109.47073 * 63.76759 * 18 17 16 21 21 H 1.48497 * 109.47475 * 54.54438 * 20 18 17 22 22 H 1.48504 * 109.47031 * 174.54746 * 20 18 17 23 23 H 1.48502 * 109.46985 * 294.54359 * 20 18 17 24 24 C 1.56063 * 109.55680 * 311.00409 * 6 5 4 25 25 H 1.09004 * 109.47199 * 59.99890 * 1 2 3 26 26 H 1.09003 * 109.47720 * 299.99944 * 1 2 3 27 27 H 1.09002 * 109.47378 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47039 * 59.99904 * 3 2 1 29 29 H 1.08997 * 109.46976 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46980 * 299.99953 * 3 2 1 31 31 H 1.09000 * 111.04520 * 232.15237 * 4 2 1 32 32 H 1.09000 * 111.05418 * 356.11650 * 4 2 1 33 33 H 1.09001 * 109.12525 * 149.06369 * 5 4 2 34 34 H 1.08997 * 109.12237 * 268.10420 * 5 4 2 35 35 H 1.09000 * 109.47577 * 70.99028 * 6 5 4 36 36 H 1.09008 * 109.46636 * 53.54943 * 7 6 5 37 37 H 1.09000 * 109.47188 * 173.54353 * 7 6 5 38 38 H 1.08005 * 119.95964 * 0.02562 * 10 9 8 39 39 H 1.08006 * 119.95151 * 180.02562 * 11 10 9 40 40 H 1.09000 * 110.57205 * 268.58438 * 14 13 12 41 41 H 1.09003 * 110.57385 * 145.70861 * 14 13 12 42 42 H 1.09001 * 109.46808 * 183.76834 * 18 17 16 43 43 H 0.96706 * 114.00484 * 300.00125 * 19 18 17 44 44 H 1.09000 * 111.41395 * 283.05664 * 24 6 5 45 45 H 1.08999 * 111.49223 * 158.07020 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5379 1.7364 0.0000 4 6 2.5555 -1.0124 1.4422 5 6 3.2461 -2.1811 0.6910 6 6 3.7193 -1.7453 -0.7036 7 6 4.1417 -2.9771 -1.5068 8 8 5.3026 -3.5593 -0.9109 9 6 5.8113 -4.6706 -1.5070 10 6 5.2039 -5.1882 -2.6410 11 6 5.7197 -6.3177 -3.2491 12 6 6.8437 -6.9355 -2.7272 13 8 7.5380 -8.0407 -3.1304 14 6 8.8140 -7.9554 -2.4687 15 8 8.5315 -7.1978 -1.2773 16 6 7.4553 -6.4177 -1.5877 17 6 6.9405 -5.2827 -0.9838 18 6 7.6041 -4.7158 0.2448 19 8 7.6735 -5.7230 1.2561 20 14 9.3254 -4.1478 -0.1853 21 1 9.2632 -3.1992 -1.3260 22 1 9.9311 -3.4705 0.9894 23 1 10.1542 -5.3211 -0.5618 24 6 2.5567 -1.0141 -1.4448 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.1906 2.2612 0.8900 29 1 3.6273 1.7027 -0.0005 30 1 2.1906 2.2612 -0.8900 31 1 3.2796 -0.4331 2.0150 32 1 1.7542 -1.3787 2.0839 33 1 4.1054 -2.5196 1.2699 34 1 2.5406 -3.0054 0.5872 35 1 4.5680 -1.0686 -0.6043 36 1 3.3304 -3.7052 -1.5090 37 1 4.3681 -2.6826 -2.5316 38 1 4.3273 -4.7079 -3.0502 39 1 5.2452 -6.7188 -4.1325 40 1 9.5356 -7.4301 -3.0944 41 1 9.1798 -8.9497 -2.2126 42 1 7.0238 -3.8700 0.6136 43 1 6.8117 -6.0658 1.5297 44 1 1.8197 -1.7216 -1.8247 45 1 2.9326 -0.3695 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_15096578_18051908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:04:58 Heat of formation + Delta-G solvation = -148.011742 kcal Electronic energy + Delta-G solvation = -26005.980312 eV Core-core repulsion = 22306.299653 eV Total energy + Delta-G solvation = -3699.680658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.26529 -41.00382 -38.49733 -37.60911 -37.01732 -36.34468 -32.51944 -30.75061 -30.15539 -29.08553 -28.35592 -27.21305 -26.86196 -26.71538 -24.24229 -23.41955 -22.84283 -20.72492 -19.72909 -19.03649 -18.81063 -17.94857 -17.60173 -17.03541 -16.76722 -16.34054 -16.20820 -15.71109 -15.56124 -15.23306 -14.88656 -14.68630 -14.31091 -14.09683 -13.97853 -13.85642 -13.79688 -13.75065 -13.61764 -13.38431 -13.30406 -13.15853 -12.84950 -12.70324 -12.37099 -12.30376 -12.16006 -12.12302 -11.72891 -11.44043 -11.31492 -11.20957 -11.08557 -10.74025 -10.42029 -10.23546 -9.69745 -8.86581 -0.07491 0.07387 1.13830 1.39843 1.44987 1.55281 1.77405 1.92967 2.04088 2.05922 2.17708 2.42744 2.60940 2.69947 3.24954 3.64949 3.72978 3.78661 3.83378 3.91188 3.99997 4.09509 4.13096 4.16633 4.25082 4.36589 4.46464 4.59143 4.62477 4.74223 4.79226 4.80860 4.83161 4.86186 4.87249 4.88010 4.91423 5.02381 5.09063 5.15978 5.19375 5.27100 5.40102 5.53130 5.57483 5.63246 5.66727 5.97240 6.29411 6.63160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.039 2.961 3 C -0.459 4.459 4 C -0.417 4.417 5 C -0.111 4.111 6 C -0.085 4.085 7 C 0.056 3.944 8 O -0.314 6.314 9 C 0.155 3.845 10 C -0.195 4.195 11 C -0.053 4.053 12 C -0.029 4.029 13 O -0.322 6.322 14 C 0.200 3.800 15 O -0.311 6.311 16 C 0.074 3.926 17 C -0.159 4.159 18 C -0.072 4.072 19 O -0.549 6.549 20 Si 1.013 2.987 21 H -0.248 1.248 22 H -0.258 1.258 23 H -0.261 1.261 24 C -0.395 4.395 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.100 0.900 41 H 0.158 0.842 42 H 0.094 0.906 43 H 0.377 0.623 44 H 0.091 0.909 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 3.076 -2.868 5.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.232 2.768 3 C -0.566 4.566 4 C -0.501 4.501 5 C -0.149 4.149 6 C -0.103 4.103 7 C -0.018 4.018 8 O -0.228 6.228 9 C 0.108 3.892 10 C -0.214 4.214 11 C -0.072 4.072 12 C -0.073 4.073 13 O -0.239 6.239 14 C 0.090 3.910 15 O -0.227 6.227 16 C 0.028 3.972 17 C -0.161 4.161 18 C -0.181 4.181 19 O -0.356 6.356 20 Si 0.833 3.167 21 H -0.171 1.171 22 H -0.182 1.182 23 H -0.185 1.185 24 C -0.480 4.480 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.190 0.810 39 H 0.178 0.822 40 H 0.118 0.882 41 H 0.175 0.825 42 H 0.112 0.888 43 H 0.226 0.774 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.636 3.394 -2.890 5.179 hybrid contribution -0.786 -0.803 0.159 1.134 sum -3.421 2.591 -2.731 5.087 Atomic orbital electron populations 1.26191 1.21170 1.04579 1.04453 0.79425 0.65658 0.65651 0.66081 1.26222 1.06687 1.19211 1.04477 1.26724 1.05525 1.06725 1.11153 1.21732 1.00143 0.98491 0.94512 1.21736 0.99163 0.95000 0.94406 1.23345 0.85179 0.95399 0.97869 1.86063 1.45143 1.38400 1.53204 1.18222 0.91301 0.87626 0.92014 1.21309 1.03998 0.98924 0.97160 1.20201 0.92838 0.93808 1.00321 1.19962 0.99636 0.90594 0.97083 1.87352 1.28144 1.40152 1.68227 1.26107 0.85502 0.99703 0.79733 1.87470 1.45716 1.52792 1.36726 1.19318 0.90422 0.93170 0.94259 1.18502 0.98976 0.95917 1.02733 1.24943 1.12737 0.93809 0.86584 1.86684 1.35345 1.57225 1.56306 0.84475 0.73304 0.79060 0.79857 1.17145 1.18166 1.18541 1.26888 1.02238 1.08030 1.10889 0.90956 0.91486 0.91046 0.91430 0.91275 0.90957 0.91061 0.90585 0.92842 0.91830 0.89941 0.90389 0.90165 0.81017 0.82167 0.88217 0.82499 0.88811 0.77381 0.88982 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.53 8.65 113.37 0.98 3.51 16 2 Si 1.04 -8.13 13.35 68.60 0.92 -7.22 16 3 C -0.46 2.29 8.65 113.37 0.98 3.27 16 4 C -0.42 1.58 5.85 72.72 0.43 2.01 16 5 C -0.11 0.29 5.21 31.52 0.16 0.46 16 6 C -0.08 0.39 2.40 -9.54 -0.02 0.37 16 7 C 0.06 -0.23 4.11 71.98 0.30 0.06 16 8 O -0.31 -0.36 8.68 -93.34 -0.81 -1.17 16 9 C 0.15 0.45 6.66 22.48 0.15 0.60 16 10 C -0.20 0.10 9.03 22.38 0.20 0.30 16 11 C -0.05 -0.09 10.05 22.33 0.22 0.14 16 12 C -0.03 -0.19 7.15 22.58 0.16 -0.03 16 13 O -0.32 -2.23 11.41 -77.22 -0.88 -3.11 16 14 C 0.20 0.50 8.89 113.37 1.01 1.51 16 15 O -0.31 -2.82 10.19 -76.06 -0.77 -3.60 16 16 C 0.07 0.61 5.95 22.59 0.13 0.75 16 17 C -0.16 -1.01 4.48 -19.70 -0.09 -1.10 16 18 C -0.07 -0.42 2.71 71.24 0.19 -0.23 16 19 O -0.55 -3.93 12.48 -148.98 -1.86 -5.79 16 20 Si 1.01 6.77 27.33 68.60 1.87 8.64 16 21 H -0.25 -1.40 7.11 99.48 0.71 -0.69 16 22 H -0.26 -1.90 7.11 99.48 0.71 -1.19 16 23 H -0.26 -2.53 6.74 99.48 0.67 -1.86 16 24 C -0.40 3.10 5.30 73.04 0.39 3.48 16 25 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 31 H 0.07 -0.19 8.04 -2.39 -0.02 -0.21 16 32 H 0.08 -0.26 8.04 -2.39 -0.02 -0.28 16 33 H 0.05 0.02 8.12 -2.39 -0.02 0.00 16 34 H 0.06 -0.19 8.04 -2.39 -0.02 -0.21 16 35 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.08 -0.50 7.59 -2.38 -0.02 -0.52 16 37 H 0.08 -0.53 7.66 -2.39 -0.02 -0.55 16 38 H 0.17 -1.15 6.28 -2.91 -0.02 -1.16 16 39 H 0.16 -0.50 8.06 -2.91 -0.02 -0.53 16 40 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.16 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.09 0.31 6.82 -2.39 -0.02 0.30 16 43 H 0.38 0.49 9.08 -74.05 -0.67 -0.18 16 44 H 0.09 -0.84 8.03 -2.39 -0.02 -0.86 16 45 H 0.09 -0.80 8.06 -2.39 -0.02 -0.82 16 Total: 0.00 -13.84 365.48 4.69 -9.15 By element: Atomic # 1 Polarization: -13.02 SS G_CDS: 1.03 Total: -11.99 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 5.20 Total: 15.09 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -4.33 Total: -13.67 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.79 Total: 1.43 kcal Total: -13.84 4.69 -9.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_15096578_18051908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.867 kcal (2) G-P(sol) polarization free energy of solvation -13.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds