Wall clock time and date at job start Tue Mar 9 2021 14:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 O 1.42896 * 109.47051 * 66.45352 * 7 6 5 9 9 C 1.35909 * 116.99788 * 180.02562 * 8 7 6 10 10 C 1.38695 * 120.04572 * 359.97438 * 9 8 7 11 11 C 1.38247 * 119.93977 * 179.97438 * 10 9 8 12 12 Br 1.89104 * 119.98184 * 180.02562 * 11 10 9 13 13 C 1.38383 * 120.02981 * 359.97438 * 11 10 9 14 14 I 2.09507 * 119.95420 * 180.02562 * 13 11 10 15 15 C 1.38316 * 120.09038 * 359.97438 * 13 11 10 16 16 C 1.38130 * 120.06116 * 359.78966 * 15 13 11 17 17 C 1.50694 * 120.01813 * 180.25812 * 16 15 13 18 18 O 1.42892 * 109.47431 * 105.18616 * 17 16 15 19 19 Si 1.86308 * 109.47003 * 345.18434 * 17 16 15 20 20 H 1.48497 * 109.46899 * 60.00120 * 19 17 16 21 21 H 1.48497 * 109.47183 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47051 * 300.00418 * 19 17 16 23 23 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 24 24 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 28 28 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 30 30 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 31 31 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 32 32 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 33 33 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 34 34 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 35 35 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 36 36 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 37 37 H 1.08001 * 120.02771 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.96977 * 180.02562 * 15 13 11 39 39 H 1.09002 * 109.47263 * 225.19021 * 17 16 15 40 40 H 0.96706 * 114.00236 * 299.99831 * 18 17 16 41 41 H 1.08995 * 111.07416 * 213.38000 * 23 6 5 42 42 H 1.08996 * 111.09205 * 89.35608 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 8 4.9787 -3.8514 -0.9161 9 6 6.0611 -4.4087 -1.5204 10 6 6.6046 -3.8194 -2.6522 11 6 7.7059 -4.3877 -3.2647 12 35 8.4484 -3.5848 -4.8075 13 6 8.2659 -5.5433 -2.7488 14 53 9.9354 -6.4022 -3.6786 15 6 7.7255 -6.1314 -1.6196 16 6 6.6281 -5.5640 -1.0017 17 6 6.0437 -6.2024 0.2320 18 8 6.4037 -5.4343 1.3819 19 14 6.7078 -7.9341 0.4090 20 1 8.1871 -7.8870 0.5295 21 1 6.1315 -8.5634 1.6243 22 1 6.3336 -8.7323 -0.7861 23 6 2.5556 -1.0124 -1.4423 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.1907 2.2612 0.8899 28 1 3.6274 1.7027 -0.0005 29 1 2.1908 2.2612 -0.8900 30 1 2.9328 -0.3695 2.2392 31 1 1.8198 -1.7216 1.8247 32 1 4.5681 -1.0679 0.6057 33 1 4.0203 -2.6213 1.2792 34 1 2.5407 -3.0062 -0.5835 35 1 4.1426 -2.8616 -2.5254 36 1 5.2196 -1.8841 -1.4992 37 1 6.1683 -2.9168 -3.0540 38 1 8.1643 -7.0330 -1.2183 39 1 4.9579 -6.2370 0.1435 40 1 7.3576 -5.3611 1.5231 41 1 1.7543 -1.3787 -2.0838 42 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_7_15786356_18051908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:05:47 Heat of formation + Delta-G solvation = -79.488322 kcal Electronic energy + Delta-G solvation = -23863.166301 eV Core-core repulsion = 20257.914516 eV Total energy + Delta-G solvation = -3605.251785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 483.948 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.76354 -39.39066 -37.78190 -36.80148 -33.94595 -32.84107 -31.20250 -30.74358 -29.29989 -28.84398 -28.55981 -27.32338 -26.46228 -24.45537 -23.27841 -22.34734 -20.82193 -19.42905 -18.30927 -17.36752 -17.16703 -16.82324 -16.14138 -15.98803 -15.72459 -15.45130 -15.28629 -14.74821 -14.66755 -14.30983 -14.05813 -13.98654 -13.96099 -13.61502 -13.53742 -13.35270 -13.15965 -12.94091 -12.81759 -12.44146 -12.31552 -12.25250 -12.18085 -11.86990 -11.81216 -11.75531 -11.67019 -11.48424 -11.06356 -10.94555 -10.65603 -10.54227 -10.46313 -10.35976 -10.13087 -9.40063 -0.36968 -0.13765 -0.10290 0.42683 1.04522 1.32347 1.43960 1.50013 1.80037 1.82476 1.84145 1.98630 2.11969 2.48721 3.32362 3.35157 3.58978 3.65606 3.71993 3.87429 3.93524 4.05920 4.17808 4.24930 4.35366 4.42486 4.47806 4.52991 4.59389 4.63781 4.64132 4.66331 4.67253 4.68412 4.69714 4.84966 5.03818 5.05936 5.15730 5.30486 5.36300 5.41071 5.46074 5.47490 6.12707 6.51226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.967 3.033 3 C -0.442 4.442 4 C -0.396 4.396 5 C -0.113 4.113 6 C -0.077 4.077 7 C 0.057 3.943 8 O -0.290 6.290 9 C 0.187 3.813 10 C -0.182 4.182 11 C -0.017 4.017 12 Br -0.017 7.017 13 C -0.120 4.120 14 I -0.010 7.010 15 C -0.051 4.051 16 C -0.139 4.139 17 C -0.066 4.066 18 O -0.528 6.528 19 Si 0.932 3.068 20 H -0.247 1.247 21 H -0.245 1.245 22 H -0.244 1.244 23 C -0.396 4.396 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.123 0.877 40 H 0.374 0.626 41 H 0.082 0.918 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 1.572 0.690 2.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.165 2.835 3 C -0.550 4.550 4 C -0.482 4.482 5 C -0.150 4.150 6 C -0.096 4.096 7 C -0.018 4.018 8 O -0.202 6.202 9 C 0.138 3.862 10 C -0.205 4.205 11 C -0.101 4.101 12 Br 0.069 6.931 13 C -0.263 4.263 14 I 0.139 6.861 15 C -0.072 4.072 16 C -0.142 4.142 17 C -0.177 4.177 18 O -0.333 6.333 19 Si 0.753 3.247 20 H -0.170 1.170 21 H -0.168 1.168 22 H -0.167 1.167 23 C -0.481 4.481 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.220 0.780 41 H 0.101 0.899 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.092 0.469 -0.246 1.213 hybrid contribution -0.535 0.842 0.341 1.054 sum -1.626 1.311 0.094 2.091 Atomic orbital electron populations 1.26019 1.19957 1.04622 1.04494 0.80512 0.67426 0.67594 0.67993 1.26014 1.06609 1.17868 1.04548 1.26660 1.03789 1.07999 1.09801 1.21921 0.97930 1.01073 0.94093 1.21518 0.95029 0.98524 0.94517 1.23257 0.96380 0.84669 0.97462 1.86225 1.40925 1.40823 1.52195 1.18697 0.86528 0.91274 0.89663 1.21266 0.98272 1.03108 0.97811 1.21605 0.97265 0.95777 0.95409 1.96858 1.83036 1.80674 1.32518 1.24258 1.02227 0.98829 1.00945 1.96951 1.30219 1.80446 1.78510 1.20911 0.94044 0.98980 0.93259 1.19819 0.97778 0.96269 1.00303 1.24817 1.05102 1.04659 0.83127 1.86585 1.28442 1.74742 1.43500 0.85971 0.80662 0.75552 0.82505 1.17047 1.16789 1.16680 1.26683 1.05351 1.05247 1.10843 0.91224 0.91065 0.91017 0.91055 0.91087 0.91152 0.90353 0.90323 0.91914 0.90515 0.89796 0.91540 0.91506 0.83386 0.83940 0.85936 0.77954 0.89864 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.92 8.65 101.05 0.87 1.79 16 2 Si 0.97 -3.11 13.35 -169.99 -2.27 -5.38 16 3 C -0.44 0.93 8.65 101.05 0.87 1.81 16 4 C -0.40 0.63 5.95 38.72 0.23 0.86 16 5 C -0.11 0.09 5.06 -24.87 -0.13 -0.04 16 6 C -0.08 0.11 2.58 -89.07 -0.23 -0.12 16 7 C 0.06 -0.06 3.98 37.16 0.15 0.09 16 8 O -0.29 -0.24 9.23 -19.45 -0.18 -0.42 16 9 C 0.19 0.17 6.66 -39.22 -0.26 -0.09 16 10 C -0.18 -0.10 8.78 -39.41 -0.35 -0.45 16 11 C -0.02 -0.02 6.22 -39.52 -0.25 -0.27 16 12 Br -0.02 -0.02 31.95 -68.01 -2.17 -2.20 16 13 C -0.12 -0.18 6.20 -39.50 -0.25 -0.42 16 14 I -0.01 -0.01 38.57 -73.02 -2.82 -2.83 16 15 C -0.05 -0.03 8.37 -39.59 -0.33 -0.36 16 16 C -0.14 -0.08 5.27 -104.47 -0.55 -0.63 16 17 C -0.07 0.02 2.38 36.00 0.09 0.10 16 18 O -0.53 -0.16 12.88 -35.23 -0.45 -0.62 16 19 Si 0.93 -0.57 25.49 -169.99 -4.33 -4.91 16 20 H -0.25 0.23 6.74 56.52 0.38 0.61 16 21 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 22 H -0.24 0.00 7.11 56.52 0.40 0.40 16 23 C -0.40 1.06 5.28 38.41 0.20 1.26 16 24 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 25 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 30 H 0.08 -0.12 8.06 -51.93 -0.42 -0.53 16 31 H 0.08 -0.10 8.06 -51.93 -0.42 -0.52 16 32 H 0.06 -0.06 8.05 -51.93 -0.42 -0.48 16 33 H 0.08 0.06 8.11 -51.93 -0.42 -0.36 16 34 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 35 H 0.07 -0.12 7.65 -51.92 -0.40 -0.52 16 36 H 0.07 -0.12 7.59 -51.93 -0.39 -0.51 16 37 H 0.15 -0.14 6.30 -52.49 -0.33 -0.48 16 38 H 0.14 -0.06 4.88 -52.48 -0.26 -0.31 16 39 H 0.12 -0.05 7.83 -51.93 -0.41 -0.46 16 40 H 0.37 -1.08 8.70 45.56 0.40 -0.69 16 41 H 0.08 -0.24 8.04 -51.93 -0.42 -0.66 16 42 H 0.08 -0.24 7.85 -51.93 -0.41 -0.65 16 LS Contribution 383.48 15.07 5.78 5.78 Total: 0.00 -3.78 383.48 -11.98 -15.76 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: -5.61 Total: -8.72 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.08 Total: 3.54 kcal Atomic # 8 Polarization: -0.40 SS G_CDS: -0.63 Total: -1.04 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: -6.60 Total: -10.29 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.17 Total: -2.20 kcal Atomic # 53 Polarization: -0.01 SS G_CDS: -2.82 Total: -2.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -3.78 -11.98 -15.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_15786356_18051908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.731 kcal (2) G-P(sol) polarization free energy of solvation -3.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds