Wall clock time and date at job start Tue Mar 9 2021 14:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53005 * 109.12306 * 169.41478 * 6 5 4 8 8 O 1.42894 * 109.46845 * 66.45284 * 7 6 5 9 9 C 1.35834 * 116.99827 * 179.97438 * 8 7 6 10 10 C 1.36612 * 120.22230 * 269.72087 * 9 8 7 11 11 C 1.50702 * 119.52202 * 0.02562 * 10 9 8 12 12 O 1.42896 * 109.47066 * 284.99251 * 11 10 9 13 13 Si 1.86306 * 109.47039 * 164.99720 * 11 10 9 14 14 H 1.48500 * 109.47145 * 59.99494 * 13 11 10 15 15 H 1.48498 * 109.46939 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46940 * 299.99866 * 13 11 10 17 17 C 1.39247 * 120.94727 * 179.76270 * 10 9 8 18 18 C 1.36234 * 121.04212 * 0.52455 * 17 10 9 19 19 Cl 1.73600 * 120.12502 * 179.72386 * 18 17 10 20 20 C 1.40654 * 119.74648 * 359.73819 * 18 17 10 21 21 C 1.40481 * 121.27255 * 179.97438 * 20 18 17 22 22 C 1.36147 * 119.65126 * 180.02562 * 21 20 18 23 23 C 1.39308 * 120.97188 * 359.97438 * 22 21 20 24 24 C 1.36174 * 120.97697 * 359.97438 * 23 22 21 25 25 C 1.40380 * 119.65470 * 359.97438 * 24 23 22 26 26 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 34 34 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 35 35 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 36 36 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 37 37 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 38 38 H 1.09000 * 109.46644 * 186.45324 * 7 6 5 39 39 H 1.09000 * 109.46972 * 306.45125 * 7 6 5 40 40 H 1.08996 * 109.47711 * 44.99485 * 11 10 9 41 41 H 0.96705 * 114.00507 * 300.00377 * 12 11 10 42 42 H 1.07999 * 119.47885 * 180.26202 * 17 10 9 43 43 H 1.07995 * 120.17435 * 0.02562 * 21 20 18 44 44 H 1.08003 * 119.51275 * 180.02562 * 22 21 20 45 45 H 1.08010 * 119.51356 * 180.02562 * 23 22 21 46 46 H 1.07999 * 120.17159 * 180.02562 * 24 23 22 47 47 H 1.08995 * 111.07416 * 213.38000 * 26 6 5 48 48 H 1.08996 * 111.09205 * 89.35608 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4527 -2.6558 -1.5012 8 8 4.9813 -3.8484 -0.9180 9 6 6.0631 -4.4038 -1.5234 10 6 5.8969 -5.3381 -2.5060 11 6 4.5050 -5.7476 -2.9137 12 8 3.9471 -6.6010 -1.9125 13 14 4.5762 -6.6589 -4.5371 14 1 5.4247 -7.8686 -4.3889 15 1 3.2047 -7.0629 -4.9384 16 1 5.1560 -5.7720 -5.5775 17 6 6.9950 -5.9136 -3.1401 18 6 8.2666 -5.5701 -2.7923 19 17 9.6184 -6.3078 -3.5937 20 6 8.4800 -4.6157 -1.7814 21 6 9.7774 -4.2381 -1.3971 22 6 9.9458 -3.3113 -0.4142 23 6 8.8493 -2.7294 0.2180 24 6 7.5776 -3.0705 -0.1295 25 6 7.3650 -4.0219 -1.1396 26 6 2.5556 -1.0124 -1.4423 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 2.9328 -0.3695 2.2392 34 1 1.8198 -1.7216 1.8247 35 1 4.5681 -1.0679 0.6057 36 1 4.0203 -2.6213 1.2792 37 1 2.5407 -3.0062 -0.5835 38 1 4.1428 -2.8590 -2.5262 39 1 5.2187 -1.8803 -1.5001 40 1 3.8822 -4.8597 -3.0224 41 1 4.4508 -7.4127 -1.7622 42 1 6.8361 -6.6469 -3.9168 43 1 10.6367 -4.6807 -1.8789 44 1 10.9443 -3.0224 -0.1208 45 1 9.0101 -1.9962 0.9946 46 1 6.7369 -2.6108 0.3689 47 1 1.7543 -1.3787 -2.0838 48 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_7_8272892_18051908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:28:47 Heat of formation + Delta-G solvation = -71.240785 kcal Electronic energy + Delta-G solvation = -28784.294821 eV Core-core repulsion = 24953.517893 eV Total energy + Delta-G solvation = -3830.776928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08339 -39.71385 -38.57255 -37.83968 -36.87183 -36.28782 -32.98757 -32.10940 -30.71643 -30.03818 -29.09404 -28.36381 -27.44926 -26.42100 -24.66547 -23.92355 -23.21410 -22.81545 -20.75588 -19.30648 -18.80508 -18.70350 -17.56045 -17.06269 -16.62802 -16.31829 -15.94882 -15.89537 -15.70512 -15.35730 -15.02013 -14.94261 -14.71884 -14.48586 -14.17319 -14.10532 -13.82210 -13.76812 -13.70984 -13.37718 -13.31325 -13.25461 -13.14677 -12.75450 -12.55638 -12.49007 -12.34328 -12.26880 -12.13346 -12.03153 -11.86704 -11.84332 -11.62667 -11.40098 -11.03003 -10.77426 -10.74930 -10.43115 -10.39838 -10.20672 -9.85803 -8.89590 -0.81938 -0.31118 0.71670 0.89651 1.06357 1.35102 1.44959 1.58846 1.75057 1.82970 2.02783 2.06568 2.45358 2.67822 2.87089 3.30241 3.42053 3.59134 3.76266 3.82525 3.89163 3.99019 4.02452 4.07233 4.20714 4.28826 4.30684 4.37516 4.45099 4.53273 4.63758 4.65444 4.70641 4.75242 4.80999 4.82710 4.85492 4.86522 4.87464 4.91736 4.95079 5.03734 5.20352 5.20843 5.27647 5.37951 5.40435 5.44555 5.53191 5.56739 5.62683 5.66035 5.81082 6.40439 6.65020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.038 2.962 3 C -0.453 4.453 4 C -0.412 4.412 5 C -0.111 4.111 6 C -0.077 4.077 7 C 0.066 3.934 8 O -0.329 6.329 9 C 0.146 3.854 10 C -0.145 4.145 11 C -0.070 4.070 12 O -0.543 6.543 13 Si 0.966 3.034 14 H -0.242 1.242 15 H -0.263 1.263 16 H -0.251 1.251 17 C -0.105 4.105 18 C -0.034 4.034 19 Cl -0.053 7.053 20 C -0.045 4.045 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.110 4.110 24 C -0.104 4.104 25 C -0.078 4.078 26 C -0.404 4.404 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.116 0.884 41 H 0.386 0.614 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.140 0.860 47 H 0.086 0.914 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 3.541 0.020 3.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.231 2.769 3 C -0.561 4.561 4 C -0.497 4.497 5 C -0.149 4.149 6 C -0.096 4.096 7 C -0.007 4.007 8 O -0.247 6.247 9 C 0.101 3.899 10 C -0.146 4.146 11 C -0.180 4.180 12 O -0.349 6.349 13 Si 0.789 3.211 14 H -0.166 1.166 15 H -0.188 1.188 16 H -0.175 1.175 17 C -0.124 4.124 18 C -0.061 4.061 19 Cl -0.024 7.024 20 C -0.046 4.046 21 C -0.139 4.139 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.079 4.079 26 C -0.488 4.488 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.133 0.867 41 H 0.235 0.765 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.105 0.895 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.200 3.476 -0.661 3.544 hybrid contribution 0.761 -0.551 0.145 0.951 sum 0.561 2.925 -0.515 3.022 Atomic orbital electron populations 1.26202 1.21320 1.04446 1.04522 0.79449 0.65639 0.65938 0.65855 1.26145 1.06748 1.18574 1.04615 1.26855 1.03690 1.08363 1.10808 1.21899 0.98532 1.00224 0.94225 1.21510 0.95001 0.98607 0.94458 1.23219 0.96049 0.84315 0.97136 1.86049 1.42903 1.42541 1.53186 1.18288 0.85937 0.93771 0.91888 1.20262 0.96533 1.00214 0.97600 1.24948 0.91346 0.99661 1.02026 1.86539 1.53393 1.35569 1.59427 0.85471 0.80446 0.80239 0.74956 1.16603 1.18790 1.17487 1.20708 0.90275 1.00667 1.00708 1.20665 0.89256 0.98660 0.97531 1.98379 1.44714 1.81035 1.78294 1.17871 0.94446 0.96437 0.95866 1.21291 0.95419 0.98621 0.98542 1.21315 1.00707 0.95036 0.94710 1.21312 0.91852 0.99737 0.99903 1.21152 0.98815 0.96331 0.95846 1.18440 0.91833 0.98920 0.98677 1.26816 1.05580 1.05008 1.11397 0.91023 0.91192 0.91342 0.91127 0.91051 0.90957 0.90243 0.90960 0.91215 0.92693 0.90819 0.92271 0.92055 0.86659 0.76489 0.83525 0.84042 0.82911 0.82992 0.84196 0.89516 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.67 8.65 113.37 0.98 2.65 16 2 Si 1.04 -6.35 13.35 68.60 0.92 -5.44 16 3 C -0.45 2.11 8.65 113.37 0.98 3.09 16 4 C -0.41 1.00 5.95 72.99 0.43 1.44 16 5 C -0.11 0.07 5.06 31.80 0.16 0.23 16 6 C -0.08 0.05 2.58 -9.79 -0.03 0.03 16 7 C 0.07 0.07 5.02 71.98 0.36 0.43 16 8 O -0.33 -1.76 8.36 -91.68 -0.77 -2.52 16 9 C 0.15 0.83 5.67 22.57 0.13 0.96 16 10 C -0.14 -0.58 5.24 -20.00 -0.10 -0.69 16 11 C -0.07 -0.13 2.32 71.24 0.17 0.04 16 12 O -0.54 -1.87 12.88 -148.98 -1.92 -3.79 16 13 Si 0.97 0.15 25.44 68.60 1.75 1.89 16 14 H -0.24 0.18 6.72 99.48 0.67 0.85 16 15 H -0.26 -0.71 7.11 99.48 0.71 0.00 16 16 H -0.25 -0.25 7.11 99.48 0.71 0.46 16 17 C -0.11 -0.38 8.33 22.05 0.18 -0.19 16 18 C -0.03 -0.17 6.32 22.39 0.14 -0.03 16 19 Cl -0.05 -0.19 27.50 -2.72 -0.07 -0.26 16 20 C -0.05 -0.24 5.74 -21.29 -0.12 -0.37 16 21 C -0.12 -0.30 9.44 22.33 0.21 -0.09 16 22 C -0.10 0.06 9.95 22.04 0.22 0.28 16 23 C -0.11 0.06 9.95 22.05 0.22 0.28 16 24 C -0.10 -0.26 9.56 22.31 0.21 -0.05 16 25 C -0.08 -0.43 5.75 -21.23 -0.12 -0.56 16 26 C -0.40 1.75 5.28 72.79 0.38 2.13 16 27 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 32 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.08 -0.23 8.06 -2.39 -0.02 -0.25 16 34 H 0.07 -0.08 8.06 -2.39 -0.02 -0.10 16 35 H 0.07 -0.17 8.05 -2.39 -0.02 -0.19 16 36 H 0.05 0.16 8.12 -2.39 -0.02 0.14 16 37 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.06 0.00 7.05 -2.39 -0.02 -0.02 16 39 H 0.06 -0.03 8.07 -2.39 -0.02 -0.04 16 40 H 0.12 0.13 6.44 -2.39 -0.02 0.11 16 41 H 0.39 -1.13 8.70 -74.05 -0.64 -1.77 16 42 H 0.15 0.11 4.78 -2.91 -0.01 0.10 16 43 H 0.14 0.06 6.98 -2.91 -0.02 0.04 16 44 H 0.15 -0.87 8.06 -2.91 -0.02 -0.90 16 45 H 0.15 -0.86 8.06 -2.91 -0.02 -0.89 16 46 H 0.14 0.11 7.62 -2.91 -0.02 0.09 16 47 H 0.09 -0.42 8.04 -2.39 -0.02 -0.44 16 48 H 0.09 -0.47 7.84 -2.39 -0.02 -0.49 16 Total: 0.00 -10.86 397.77 5.35 -5.51 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: 1.03 Total: -4.98 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 4.41 Total: 9.58 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -2.69 Total: -6.31 kcal Atomic # 14 Polarization: -6.21 SS G_CDS: 2.66 Total: -3.54 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.07 Total: -0.26 kcal Total: -10.86 5.35 -5.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_7_8272892_18051908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.728 kcal (2) G-P(sol) polarization free energy of solvation -10.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds