Wall clock time and date at job start Tue Mar 9 2021 15:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86302 * 109.46902 * 2 1 4 4 C 1.50694 * 109.47341 * 120.00077 * 2 1 3 5 5 C 1.38213 * 119.82300 * 64.99956 * 4 2 1 6 6 C 1.38312 * 120.12233 * 180.02562 * 5 4 2 7 7 F 1.35097 * 120.11428 * 180.02562 * 6 5 4 8 8 C 1.39879 * 119.77438 * 0.02562 * 6 5 4 9 9 C 1.47565 * 120.17771 * 179.97438 * 8 6 5 10 10 O 1.21495 * 119.99213 * 0.02562 * 9 8 6 11 11 O 1.34723 * 120.00303 * 179.97438 * 9 8 6 12 12 C 1.45202 * 116.99772 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47240 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47470 * 179.97438 * 13 12 11 15 15 O 1.42968 * 109.47403 * 300.00616 * 13 12 11 16 16 C 1.43085 * 113.77669 * 178.79297 * 15 13 12 17 17 C 1.53266 * 108.93959 * 302.02818 * 16 15 13 18 18 H 1.09001 * 109.57278 * 294.58378 * 17 16 15 19 19 N 1.46505 * 109.57325 * 174.33080 * 17 16 15 20 20 C 1.34528 * 124.45854 * 299.69610 * 19 17 16 21 21 O 1.21450 * 125.70919 * 0.03646 * 20 19 17 22 22 C 1.47810 * 108.57877 * 179.90919 * 20 19 17 23 23 C 1.40948 * 105.87933 * 0.34538 * 22 20 19 24 24 C 1.38568 * 119.81995 * 179.79689 * 23 22 20 25 25 C 1.38610 * 119.71874 * 0.02562 * 24 23 22 26 26 C 1.38224 * 120.46396 * 359.97438 * 25 24 23 27 27 C 1.38567 * 134.30196 * 180.12723 * 22 20 19 28 28 C 1.34520 * 124.45954 * 119.99995 * 19 17 16 29 29 O 1.21445 * 125.70933 * 359.94028 * 28 19 17 30 30 C 1.53253 * 108.84410 * 54.52219 * 17 16 15 31 31 O 1.42973 * 109.47122 * 59.99704 * 13 12 11 32 32 C 1.39726 * 119.65657 * 0.25071 * 8 6 5 33 33 C 1.37839 * 119.86570 * 359.51231 * 32 8 6 34 34 H 0.96697 * 113.99848 * 299.99614 * 1 2 3 35 35 H 1.09002 * 109.47104 * 240.00579 * 2 1 3 36 36 H 1.48495 * 110.00491 * 300.00234 * 3 2 1 37 37 H 1.48507 * 109.99971 * 61.32154 * 3 2 1 38 38 H 1.07994 * 119.93867 * 0.02562 * 5 4 2 39 39 H 1.09001 * 109.47259 * 60.00306 * 12 11 9 40 40 H 1.08998 * 109.47396 * 300.00083 * 12 11 9 41 41 H 1.08996 * 109.56207 * 182.18711 * 16 15 13 42 42 H 1.09004 * 109.55712 * 61.86007 * 16 15 13 43 43 H 1.08002 * 120.13794 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.76730 * 180.02562 * 25 24 23 45 45 H 1.07993 * 119.77579 * 179.97438 * 26 25 24 46 46 H 1.08008 * 120.13300 * 0.24328 * 27 22 20 47 47 H 1.09001 * 109.56508 * 65.31377 * 30 17 16 48 48 H 1.09009 * 109.55905 * 185.63918 * 30 17 16 49 49 H 1.07996 * 120.06600 * 179.72932 * 32 8 6 50 50 H 1.08005 * 119.88251 * 180.22907 * 33 32 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6828 -2.0600 1.3945 6 6 2.1406 -2.7181 2.5217 7 9 1.8979 -4.0374 2.6817 8 6 2.8556 -2.0129 3.4953 9 6 3.3476 -2.7060 4.7016 10 8 3.1323 -3.8924 4.8507 11 8 4.0364 -2.0236 5.6369 12 6 4.4891 -2.7697 6.7974 13 6 5.2462 -1.8339 7.7419 14 1 5.5856 -2.3938 8.6133 15 8 6.3749 -1.2805 7.0610 16 6 7.1364 -0.3659 7.8554 17 6 6.2207 0.7724 8.3186 18 1 5.8909 1.3502 7.4552 19 7 6.9504 1.6441 9.2428 20 6 7.4800 1.2407 10.4118 21 8 7.4304 0.1134 10.8610 22 6 8.1352 2.3983 11.0565 23 6 7.9380 3.4879 10.1844 24 6 8.4397 4.7361 10.5168 25 6 9.1330 4.9037 11.7053 26 6 9.3264 3.8352 12.5606 27 6 8.8301 2.5809 12.2412 28 6 7.1740 2.9545 9.0370 29 8 6.8094 3.5925 8.0700 30 6 5.0051 0.1707 9.0319 31 8 4.3790 -0.7779 8.1627 32 6 3.0967 -0.6475 3.3227 33 6 2.6380 -0.0072 2.1915 34 1 -0.3933 0.4416 0.7651 35 1 1.7924 -0.5138 -0.8901 36 1 1.5615 2.4680 -1.2084 37 1 1.5879 2.4586 1.2243 38 1 1.1301 -2.6017 0.6413 39 1 5.1500 -3.5749 6.4765 40 1 3.6285 -3.1911 7.3168 41 1 7.9532 0.0420 7.2600 42 1 7.5403 -0.8859 8.7241 43 1 8.2913 5.5746 9.8526 44 1 9.5241 5.8763 11.9654 45 1 9.8685 3.9783 13.4835 46 1 8.9842 1.7495 12.9132 47 1 5.3281 -0.3289 9.9452 48 1 4.2975 0.9626 9.2780 49 1 3.6442 -0.0957 4.0723 50 1 2.8274 1.0474 2.0559 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_11946254_13594054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:31:15 Heat of formation + Delta-G solvation = -203.988339 kcal Electronic energy + Delta-G solvation = -43381.257235 eV Core-core repulsion = 37415.308906 eV Total energy + Delta-G solvation = -5965.948329 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 444.124 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -50.17120 -43.69724 -41.86210 -41.16946 -40.37219 -39.93601 -39.46637 -37.87927 -37.60900 -37.16915 -37.09989 -34.56249 -33.30965 -32.15393 -31.95346 -31.71679 -29.95454 -27.84891 -27.49157 -26.33995 -25.46267 -24.60614 -24.10777 -23.55624 -23.46915 -22.43414 -22.04189 -20.98996 -19.44444 -19.17112 -19.08833 -18.95498 -18.73691 -18.23718 -18.02665 -17.75391 -17.64408 -17.43776 -17.24570 -17.02592 -16.77010 -16.75617 -16.46254 -16.20468 -16.16775 -15.92854 -15.82908 -15.47861 -15.38923 -15.31459 -15.05589 -15.00823 -14.78070 -14.69874 -14.52461 -14.47577 -14.26465 -13.79507 -13.61850 -13.42191 -13.30018 -13.27466 -13.03421 -12.82656 -12.68383 -12.47954 -12.39914 -12.24086 -11.93199 -11.80163 -11.72862 -11.68896 -11.60327 -10.97326 -10.85226 -10.75494 -10.34814 -10.25052 -10.23784 -10.04839 -4.88843 -1.10240 -0.76790 -0.05300 -0.04852 0.88417 0.89768 1.17933 1.26092 1.27037 1.62623 1.62812 1.98705 2.17102 2.22136 2.31235 2.45513 2.58040 2.87459 3.08151 3.13734 3.19096 3.23513 3.37112 3.43397 3.48090 3.54499 3.56324 3.69629 3.79633 3.88066 3.94383 4.00781 4.03928 4.04856 4.06736 4.15125 4.15495 4.20923 4.26036 4.37844 4.43595 4.46061 4.53286 4.58518 4.72027 4.79071 4.81130 4.87801 4.88607 5.03250 5.08375 5.18921 5.26000 5.34632 5.41541 5.50477 5.65949 5.70520 5.93270 6.35937 6.43537 6.44293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.090 4.090 3 Si 0.775 3.225 4 C -0.043 4.043 5 C -0.141 4.141 6 C 0.144 3.856 7 F -0.133 7.133 8 C -0.176 4.176 9 C 0.509 3.491 10 O -0.528 6.528 11 O -0.332 6.332 12 C 0.081 3.919 13 C 0.243 3.757 14 H 0.108 0.892 15 O -0.381 6.381 16 C 0.051 3.949 17 C 0.077 3.923 18 H 0.124 0.876 19 N -0.569 5.569 20 C 0.576 3.424 21 O -0.481 6.481 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.044 4.044 25 C -0.084 4.084 26 C -0.085 4.085 27 C -0.044 4.044 28 C 0.577 3.423 29 O -0.486 6.486 30 C 0.050 3.950 31 O -0.383 6.383 32 C -0.016 4.016 33 C -0.133 4.133 34 H 0.390 0.610 35 H 0.137 0.863 36 H -0.302 1.302 37 H -0.272 1.272 38 H 0.155 0.845 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.175 0.825 46 H 0.155 0.845 47 H 0.074 0.926 48 H 0.116 0.884 49 H 0.168 0.832 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.313 9.206 5.616 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.198 4.198 3 Si 0.679 3.321 4 C -0.044 4.044 5 C -0.159 4.159 6 C 0.124 3.876 7 F -0.111 7.111 8 C -0.178 4.178 9 C 0.355 3.645 10 O -0.419 6.419 11 O -0.247 6.247 12 C 0.007 3.993 13 C 0.149 3.851 14 H 0.125 0.875 15 O -0.301 6.301 16 C -0.026 4.026 17 C -0.025 4.025 18 H 0.142 0.858 19 N -0.313 5.313 20 C 0.367 3.633 21 O -0.354 6.354 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.063 4.063 25 C -0.102 4.102 26 C -0.103 4.103 27 C -0.062 4.062 28 C 0.368 3.632 29 O -0.358 6.358 30 C -0.027 4.027 31 O -0.302 6.302 32 C -0.034 4.034 33 C -0.150 4.150 34 H 0.239 0.761 35 H 0.155 0.845 36 H -0.230 1.230 37 H -0.198 1.198 38 H 0.173 0.827 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.091 0.909 43 H 0.172 0.828 44 H 0.193 0.807 45 H 0.193 0.807 46 H 0.172 0.828 47 H 0.092 0.908 48 H 0.134 0.866 49 H 0.186 0.814 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.699 8.912 4.559 12.045 hybrid contribution -1.282 -1.118 0.724 1.849 sum 5.417 7.795 5.283 10.863 Atomic orbital electron populations 1.86622 1.17880 1.80475 1.50297 1.25465 0.83894 1.12509 0.97982 0.93891 0.90078 0.71111 0.77057 1.20587 0.94548 0.92807 0.96439 1.21095 1.02542 0.95463 0.96849 1.18003 0.96758 0.77873 0.94938 1.91570 1.91884 1.32176 1.95470 1.19276 1.07924 0.96389 0.94195 1.21158 0.75162 0.84969 0.83194 1.90908 1.55708 1.17132 1.78133 1.86605 1.65487 1.42358 1.30300 1.23325 0.99701 0.92976 0.83270 1.23803 0.81052 0.87117 0.93163 0.87470 1.88230 1.40202 1.60188 1.41467 1.23043 0.93514 0.88960 0.97107 1.22597 0.93549 0.92852 0.93547 0.85782 1.46460 1.52177 1.11433 1.21276 1.18728 0.76662 0.88119 0.79759 1.90799 1.56157 1.21974 1.66491 1.20456 1.04369 0.92900 0.98621 1.20446 1.03766 0.96723 0.95310 1.21163 0.93209 0.94695 0.97220 1.21953 0.94997 1.01446 0.91800 1.21955 0.96650 0.90827 1.00832 1.21158 0.92474 0.99499 0.93077 1.18726 0.77716 0.80741 0.85974 1.90824 1.50068 1.62663 1.32245 1.23043 0.94338 0.93015 0.92301 1.88230 1.37598 1.38190 1.66222 1.21556 0.93857 0.90514 0.97445 1.21398 0.98776 1.01780 0.93073 0.76071 0.84535 1.23002 1.19773 0.82728 0.87564 0.87725 0.86451 0.90879 0.82808 0.80735 0.80746 0.82755 0.90804 0.86642 0.81437 0.81394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.17 12.83 -148.98 -1.91 -1.74 16 2 C -0.09 0.36 2.80 71.23 0.20 0.56 16 3 Si 0.77 -4.29 29.87 68.60 2.05 -2.25 16 4 C -0.04 0.10 5.36 -19.82 -0.11 -0.01 16 5 C -0.14 -0.26 9.64 22.28 0.21 -0.05 16 6 C 0.14 1.04 7.29 22.68 0.17 1.21 16 7 F -0.13 -1.73 15.55 44.97 0.70 -1.03 16 8 C -0.18 -1.07 5.88 -20.06 -0.12 -1.19 16 9 C 0.51 5.12 7.89 70.28 0.55 5.67 16 10 O -0.53 -8.45 15.13 19.85 0.30 -8.15 16 11 O -0.33 -2.33 9.27 -50.04 -0.46 -2.80 16 12 C 0.08 0.29 5.56 71.98 0.40 0.69 16 13 C 0.24 0.58 3.59 71.98 0.26 0.84 16 14 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 15 O -0.38 -1.53 10.44 -122.14 -1.27 -2.80 16 16 C 0.05 0.07 6.33 72.07 0.46 0.52 16 17 C 0.08 0.13 3.08 45.16 0.14 0.27 16 18 H 0.12 0.35 7.59 -2.39 -0.02 0.33 16 19 N -0.57 -1.09 2.53 -739.55 -1.87 -2.96 16 20 C 0.58 1.25 7.35 86.81 0.64 1.89 16 21 O -0.48 -2.72 15.16 -3.56 -0.05 -2.77 16 22 C -0.16 0.22 6.40 -20.00 -0.13 0.09 16 23 C -0.16 0.16 6.41 -20.00 -0.13 0.04 16 24 C -0.04 0.27 10.09 22.44 0.23 0.50 16 25 C -0.08 0.92 10.03 22.36 0.22 1.15 16 26 C -0.08 0.94 10.04 22.36 0.22 1.16 16 27 C -0.04 0.28 10.09 22.44 0.23 0.51 16 28 C 0.58 1.87 8.02 86.82 0.70 2.56 16 29 O -0.49 -4.03 17.44 -3.54 -0.06 -4.09 16 30 C 0.05 0.08 6.32 72.07 0.46 0.54 16 31 O -0.38 -1.64 10.44 -122.14 -1.27 -2.91 16 32 C -0.02 0.01 9.62 22.53 0.22 0.22 16 33 C -0.13 0.54 8.65 22.23 0.19 0.73 16 34 H 0.39 -2.37 8.70 -74.06 -0.64 -3.01 16 35 H 0.14 -0.82 7.96 -2.39 -0.02 -0.84 16 36 H -0.30 -0.87 7.11 99.48 0.71 -0.16 16 37 H -0.27 0.74 7.00 99.48 0.70 1.44 16 38 H 0.16 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.07 0.12 6.71 -2.39 -0.02 0.11 16 43 H 0.15 -1.32 8.06 -2.91 -0.02 -1.34 16 44 H 0.18 -2.95 8.06 -2.91 -0.02 -2.97 16 45 H 0.18 -2.96 8.06 -2.91 -0.02 -2.98 16 46 H 0.15 -1.40 8.06 -2.91 -0.02 -1.42 16 47 H 0.07 0.15 6.63 -2.39 -0.02 0.13 16 48 H 0.12 -0.01 8.14 -2.38 -0.02 -0.03 16 49 H 0.17 -0.55 7.61 -2.91 -0.02 -0.57 16 50 H 0.17 -1.55 4.81 -2.91 -0.01 -1.56 16 Total: 0.00 -27.87 434.21 1.58 -26.28 By element: Atomic # 1 Polarization: -13.13 SS G_CDS: 0.44 Total: -12.69 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 5.01 Total: 17.91 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -1.87 Total: -2.96 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -4.74 Total: -25.27 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.70 Total: -1.03 kcal Atomic # 14 Polarization: -4.29 SS G_CDS: 2.05 Total: -2.25 kcal Total: -27.87 1.58 -26.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946254_13594054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.706 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds