Wall clock time and date at job start Tue Mar 9 2021 15:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46740 * 2 1 4 4 C 1.53000 * 109.47304 * 240.00296 * 2 1 3 5 5 O 1.42898 * 109.46931 * 119.99463 * 2 1 3 6 6 C 1.42904 * 113.99654 * 60.00733 * 5 2 1 7 7 H 1.09001 * 112.90671 * 341.24461 * 6 5 2 8 8 C 1.53784 * 113.61383 * 112.49963 * 6 5 2 9 9 C 1.53785 * 87.07754 * 139.98042 * 8 6 5 10 10 H 1.08998 * 113.69086 * 89.13269 * 9 8 6 11 11 C 1.53003 * 113.60806 * 220.01881 * 9 8 6 12 12 O 1.45204 * 109.47082 * 272.49564 * 11 9 8 13 13 C 1.34731 * 117.00079 * 180.02562 * 12 11 9 14 14 O 1.21485 * 119.99759 * 0.02562 * 13 12 11 15 15 C 1.47562 * 119.99943 * 180.02562 * 13 12 11 16 16 C 1.39883 * 120.17259 * 179.97438 * 15 13 12 17 17 F 1.35101 * 120.11103 * 359.94968 * 16 15 13 18 18 C 1.38314 * 119.77256 * 179.97438 * 16 15 13 19 19 C 1.38208 * 120.12189 * 359.97438 * 18 16 15 20 20 C 1.50705 * 119.82095 * 179.97438 * 19 18 16 21 21 O 1.42894 * 109.47171 * 300.00299 * 20 19 18 22 22 Si 1.86298 * 109.46780 * 179.97438 * 20 19 18 23 23 C 1.38465 * 120.35353 * 0.27378 * 19 18 16 24 24 C 1.37844 * 120.22478 * 359.44835 * 23 19 18 25 25 C 1.53779 * 113.61045 * 209.99485 * 6 5 2 26 26 H 1.08992 * 109.47632 * 299.99936 * 1 2 3 27 27 H 1.09000 * 109.46976 * 60.00438 * 1 2 3 28 28 H 1.09003 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46761 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47028 * 299.99530 * 3 2 1 31 31 H 1.09003 * 109.47347 * 60.00038 * 3 2 1 32 32 H 1.08998 * 109.47029 * 299.99378 * 4 2 1 33 33 H 1.09000 * 109.47179 * 59.99752 * 4 2 1 34 34 H 1.08997 * 109.46820 * 179.97438 * 4 2 1 35 35 H 1.08998 * 113.61363 * 25.43389 * 8 6 5 36 36 H 1.09003 * 113.61345 * 254.52451 * 8 6 5 37 37 H 1.09001 * 109.46566 * 152.50211 * 11 9 8 38 38 H 1.08992 * 109.47337 * 32.49712 * 11 9 8 39 39 H 1.08001 * 119.93419 * 179.97438 * 18 16 15 40 40 H 1.09004 * 109.46779 * 60.00622 * 20 19 18 41 41 H 0.96709 * 113.99337 * 180.02562 * 21 20 19 42 42 H 1.48506 * 109.99834 * 60.00830 * 22 20 19 43 43 H 1.48502 * 110.00011 * 181.32094 * 22 20 19 44 44 H 1.07995 * 119.88858 * 179.70494 * 23 19 18 45 45 H 1.07992 * 120.06770 * 180.25257 * 24 23 19 46 46 H 1.09008 * 113.60995 * 105.47213 * 25 6 5 47 47 H 1.08994 * 113.61832 * 334.56517 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0063 -0.6735 1.1668 6 6 1.5847 -2.0355 1.2645 7 1 0.7242 -2.2595 0.6341 8 6 2.7335 -3.0477 1.1214 9 6 2.0562 -3.8556 2.2410 10 1 1.3246 -4.5778 1.8788 11 6 3.0421 -4.4600 3.2429 12 8 3.4836 -5.7580 2.7646 13 6 4.3605 -6.4286 3.5369 14 8 4.7454 -5.9424 4.5816 15 6 4.8534 -7.7535 3.1139 16 6 5.7644 -8.4527 3.9127 17 9 6.1974 -7.9168 5.0748 18 6 6.2206 -9.6943 3.5085 19 6 5.7776 -10.2426 2.3197 20 6 6.2796 -11.5957 1.8854 21 8 7.7005 -11.5525 1.7402 22 14 5.5016 -12.0528 0.2556 23 6 4.8799 -9.5528 1.5225 24 6 4.4115 -8.3170 1.9142 25 6 1.4333 -2.5310 2.7124 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9565 0.8900 32 1 1.6768 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7207 -1.2494 35 1 3.7072 -2.6455 1.4009 36 1 2.7464 -3.5604 0.1595 37 1 2.5520 -4.5765 4.2095 38 1 3.9028 -3.7999 3.3490 39 1 6.9242 -10.2362 4.1230 40 1 6.0135 -12.3399 2.6361 41 1 8.0930 -12.3913 1.4616 42 1 5.8564 -11.0458 -0.7767 43 1 5.9639 -13.3989 -0.1681 44 1 4.5424 -9.9862 0.5927 45 1 3.7082 -7.7830 1.2924 46 1 0.3964 -2.6266 3.0349 47 1 2.0515 -1.9876 3.4268 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_11946254_14598394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:31:20 Heat of formation + Delta-G solvation = -155.240827 kcal Electronic energy + Delta-G solvation = -29088.870995 eV Core-core repulsion = 24733.016750 eV Total energy + Delta-G solvation = -4355.854246 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.91643 -41.60022 -40.86710 -40.22764 -38.54379 -37.81047 -37.13298 -33.92060 -33.32160 -31.91516 -29.85182 -28.42160 -28.38808 -27.68825 -26.66944 -24.36714 -24.00925 -23.29155 -21.95167 -20.88295 -20.65701 -19.10704 -18.74870 -18.41379 -17.95465 -17.69033 -17.47903 -17.23125 -16.67573 -16.54272 -16.31896 -15.95952 -15.88903 -15.77160 -15.26922 -14.75442 -14.62461 -14.47916 -14.24105 -14.03801 -14.01488 -13.88695 -13.48749 -13.37499 -13.33436 -13.16483 -13.04367 -12.86326 -12.82268 -12.68998 -12.54444 -12.39899 -12.19351 -11.91219 -11.86807 -11.75767 -11.40118 -11.33949 -11.18005 -10.78796 -10.36226 -10.24503 -9.96510 -5.11209 -0.65711 -0.01452 1.06361 1.39943 1.46469 1.49681 1.81500 2.36156 2.69558 2.92662 3.06467 3.32193 3.41542 3.50355 3.59054 3.62220 3.73442 3.79043 3.86197 3.89793 3.95237 4.02509 4.05858 4.11245 4.12739 4.21428 4.40100 4.48375 4.50107 4.53956 4.61950 4.71785 4.73442 4.75742 4.77209 4.77660 4.80850 4.86641 4.87316 4.89809 4.96904 5.07716 5.08790 5.12865 5.26496 5.28606 5.33592 5.41476 5.53218 6.23732 6.40219 6.72984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.361 6.361 6 C 0.062 3.938 7 H 0.093 0.907 8 C -0.149 4.149 9 C -0.111 4.111 10 H 0.106 0.894 11 C 0.081 3.919 12 O -0.349 6.349 13 C 0.508 3.492 14 O -0.491 6.491 15 C -0.161 4.161 16 C 0.168 3.832 17 F -0.111 7.111 18 C -0.140 4.140 19 C -0.008 4.008 20 C -0.085 4.085 21 O -0.534 6.534 22 Si 0.688 3.312 23 C -0.141 4.141 24 C -0.025 4.025 25 C -0.127 4.127 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.385 0.615 42 H -0.251 1.251 43 H -0.258 1.258 44 H 0.144 0.856 45 H 0.155 0.845 46 H 0.079 0.921 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 -3.363 -4.657 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.065 3.935 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.280 6.280 6 C 0.004 3.996 7 H 0.111 0.889 8 C -0.187 4.187 9 C -0.129 4.129 10 H 0.124 0.876 11 C 0.008 3.992 12 O -0.266 6.266 13 C 0.352 3.648 14 O -0.378 6.378 15 C -0.164 4.164 16 C 0.148 3.852 17 F -0.089 7.089 18 C -0.159 4.159 19 C -0.008 4.008 20 C -0.195 4.195 21 O -0.341 6.341 22 Si 0.588 3.412 23 C -0.158 4.158 24 C -0.043 4.043 25 C -0.164 4.164 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.233 0.767 42 H -0.175 1.175 43 H -0.182 1.182 44 H 0.161 0.839 45 H 0.173 0.827 46 H 0.097 0.903 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.412 -2.638 -4.811 7.041 hybrid contribution 1.151 -0.430 0.372 1.283 sum -3.261 -3.068 -4.440 6.306 Atomic orbital electron populations 1.22470 0.95629 1.02446 1.03090 1.21544 0.93112 0.93268 0.85528 1.21774 1.02043 0.93221 1.02611 1.22468 1.02329 1.00756 0.97810 1.88046 1.73737 1.23367 1.42880 1.23567 0.97011 0.81885 0.97119 0.88922 1.23645 0.99527 0.96537 0.98969 1.22366 0.97951 0.95942 0.96652 0.87556 1.23130 0.97853 0.80496 0.97734 1.86492 1.56865 1.33034 1.50243 1.20762 0.76963 0.85088 0.81979 1.90933 1.55435 1.68150 1.23320 1.19218 1.03861 0.94389 0.98892 1.17689 0.93376 0.91795 0.82335 1.91634 1.87244 1.85524 1.44486 1.20972 1.02302 0.94274 0.98357 1.19389 0.94111 0.94460 0.92873 1.24936 0.86116 0.96834 1.11568 1.86585 1.17864 1.39134 1.90563 0.94977 0.90750 0.79891 0.75547 1.21011 0.99267 0.95237 1.00330 1.21317 0.96063 0.93910 0.93033 1.23235 1.01899 0.94127 0.97180 0.91588 0.91359 0.92218 0.91759 0.91061 0.91750 0.92268 0.91539 0.91673 0.89046 0.90823 0.90598 0.90596 0.83307 0.89580 0.76658 1.17501 1.18248 0.83922 0.82750 0.90266 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.15 8.38 37.16 0.31 0.46 16 2 C 0.10 0.01 1.11 -90.61 -0.10 -0.09 16 3 C -0.14 0.03 8.84 37.16 0.33 0.35 16 4 C -0.18 0.12 8.38 37.16 0.31 0.43 16 5 O -0.36 -0.62 10.00 -35.23 -0.35 -0.97 16 6 C 0.06 -0.02 2.82 -25.92 -0.07 -0.09 16 7 H 0.09 -0.12 5.55 -51.93 -0.29 -0.41 16 8 C -0.15 0.07 7.46 -25.92 -0.19 -0.13 16 9 C -0.11 0.11 4.02 -89.80 -0.36 -0.25 16 10 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 11 C 0.08 0.07 5.31 37.16 0.20 0.27 16 12 O -0.35 -0.65 9.47 -40.58 -0.38 -1.04 16 13 C 0.51 1.98 7.89 34.53 0.27 2.25 16 14 O -0.49 -3.47 15.13 -19.25 -0.29 -3.76 16 15 C -0.16 -0.36 5.88 -104.92 -0.62 -0.98 16 16 C 0.17 0.51 7.29 -38.94 -0.28 0.22 16 17 F -0.11 -0.60 15.55 2.25 0.04 -0.56 16 18 C -0.14 -0.16 9.57 -39.56 -0.38 -0.54 16 19 C -0.01 0.00 5.43 -104.55 -0.57 -0.57 16 20 C -0.09 0.16 2.81 36.01 0.10 0.26 16 21 O -0.53 0.19 12.74 -35.23 -0.45 -0.25 16 22 Si 0.69 -1.91 29.77 -169.99 -5.06 -6.97 16 23 C -0.14 0.20 8.65 -39.64 -0.34 -0.14 16 24 C -0.03 0.02 9.62 -39.17 -0.38 -0.36 16 25 C -0.13 0.10 7.47 -25.92 -0.19 -0.09 16 26 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.06 -0.08 6.25 -51.93 -0.32 -0.40 16 29 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 30 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.06 -0.06 7.02 -51.93 -0.36 -0.42 16 33 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 34 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.09 0.06 7.90 -51.93 -0.41 -0.35 16 36 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 37 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.08 0.11 7.84 -51.93 -0.41 -0.29 16 39 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 40 H 0.09 -0.32 7.96 -51.93 -0.41 -0.73 16 41 H 0.38 -1.66 8.74 45.56 0.40 -1.26 16 42 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 43 H -0.26 0.14 7.11 56.52 0.40 0.54 16 44 H 0.14 -0.55 4.85 -52.49 -0.25 -0.80 16 45 H 0.15 -0.44 7.61 -52.49 -0.40 -0.84 16 46 H 0.08 -0.13 8.14 -51.92 -0.42 -0.56 16 47 H 0.09 0.00 8.10 -51.93 -0.42 -0.42 16 LS Contribution 387.24 15.07 5.84 5.84 Total: 0.00 -7.66 387.24 -9.79 -17.45 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: -7.15 Total: -10.72 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.97 Total: 1.00 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -1.48 Total: -6.02 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.04 Total: -0.56 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: -5.06 Total: -6.97 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -7.66 -9.79 -17.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_11946254_14598394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.796 kcal (2) G-P(sol) polarization free energy of solvation -7.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds