Wall clock time and date at job start Tue Mar 9 2021 15:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35635 * 116.99850 * 2 1 4 4 C 1.38663 * 120.15664 * 0.02562 * 3 2 1 5 5 C 1.38099 * 120.08818 * 179.97438 * 4 3 2 6 6 C 1.38513 * 120.40446 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.84798 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.46938 * 119.99663 * 7 6 5 9 9 Si 1.86299 * 109.46748 * 359.97438 * 7 6 5 10 10 H 1.48503 * 109.47188 * 60.00070 * 9 7 6 11 11 H 1.48506 * 109.47139 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47505 * 299.99883 * 9 7 6 13 13 C 1.37808 * 120.31063 * 0.25038 * 6 5 4 14 14 C 1.39736 * 119.89961 * 359.49579 * 13 6 5 15 15 C 1.47392 * 120.19920 * 180.22503 * 14 13 6 16 16 O 1.21507 * 120.00457 * 180.27338 * 15 14 13 17 17 O 1.34753 * 119.99964 * 0.28143 * 15 14 13 18 18 C 1.45205 * 117.00097 * 179.97438 * 17 15 14 19 19 C 1.47198 * 109.47056 * 179.97438 * 18 17 15 20 20 C 7.12658 * 134.54393 * 359.97438 * 3 1 2 21 21 C 8.43941 * 138.77109 * 359.97438 * 3 1 2 22 22 C 1.39258 * 120.05616 * 38.67855 * 21 20 19 23 23 C 1.39422 * 119.75098 * 179.97438 * 22 21 20 24 24 C 1.43198 * 120.06889 * 179.97438 * 23 22 21 25 25 N 9.27942 * 158.49372 * 359.82706 * 17 1 2 26 26 C 1.39667 * 119.86292 * 0.02562 * 23 22 21 27 27 C 1.38304 * 120.10583 * 359.97438 * 26 23 22 28 28 F 1.35095 * 119.87126 * 179.97438 * 27 26 23 29 29 C 1.38300 * 120.24718 * 359.72694 * 27 26 23 30 30 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47463 * 299.99710 * 1 2 3 32 32 H 1.09001 * 109.47148 * 59.99800 * 1 2 3 33 33 H 1.08002 * 119.95420 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.79596 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47161 * 239.99929 * 7 6 5 36 36 H 0.96709 * 113.99981 * 180.02562 * 8 7 6 37 37 H 1.08001 * 120.05289 * 179.72591 * 13 6 5 38 38 H 1.08994 * 109.46831 * 299.99505 * 18 17 15 39 39 H 1.08998 * 109.47047 * 59.99421 * 18 17 15 40 40 H 1.07998 * 120.12744 * 359.97438 * 22 21 20 41 41 H 1.07994 * 119.94520 * 179.97438 * 26 23 22 42 42 H 1.07995 * 119.92847 * 180.27955 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2926 2.3735 0.0005 5 6 1.9210 3.6032 0.0011 6 6 3.3038 3.6839 0.0005 7 6 3.9765 5.0325 0.0005 8 8 4.7923 5.1578 1.1670 9 14 2.6818 6.3721 0.0005 10 1 1.8345 6.2416 1.2131 11 1 3.3446 7.7011 0.0012 12 1 1.8344 6.2417 -1.2120 13 6 4.0674 2.5367 -0.0057 14 6 3.4450 1.2856 -0.0009 15 6 4.2553 0.0544 -0.0026 16 8 3.7103 -1.0316 -0.0034 17 8 5.6005 0.1332 -0.0030 18 6 6.3342 -1.1199 -0.0041 19 6 7.7797 -0.8420 -0.0050 20 6 8.9326 -0.6204 0.0023 21 6 10.3389 -0.3502 0.0025 22 6 11.2015 -1.1426 -0.7507 23 6 12.5695 -0.8735 -0.7463 24 6 13.4627 -1.6843 -1.5178 25 7 14.3123 -3.0614 0.0790 26 6 13.0670 0.1879 0.0131 27 6 12.2051 0.9712 0.7590 28 9 12.6915 1.9963 1.4922 29 6 10.8466 0.7120 0.7530 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2140 2.3190 0.0005 34 1 1.3307 4.5076 0.0011 35 1 4.5981 5.1284 -0.8897 36 1 5.2565 6.0036 1.2334 37 1 5.1453 2.6045 -0.0106 38 1 6.0748 -1.6935 0.8857 39 1 6.0740 -1.6925 -0.8942 40 1 10.8123 -1.9625 -1.3360 41 1 14.1265 0.3972 0.0178 42 1 10.1777 1.3298 1.3338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12496218_15358960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:43:17 Heat of formation + Delta-G solvation = 231.818511 kcal Electronic energy + Delta-G solvation = -30069.183088 eV Core-core repulsion = 25375.598837 eV Total energy + Delta-G solvation = -4693.584251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 369.102 amu Computer time = 20.14 seconds Orbital eigenvalues (eV) -50.29949 -42.04383 -40.88344 -40.72100 -39.19013 -37.80844 -37.23846 -35.71877 -33.54645 -33.02841 -32.18635 -31.99366 -29.01402 -28.51379 -26.63339 -26.16033 -25.63367 -24.52206 -24.05340 -23.01101 -21.81977 -21.66982 -19.58536 -18.97704 -18.78793 -18.39229 -18.09499 -17.90698 -17.77094 -17.68570 -17.43196 -17.04563 -17.02234 -16.77369 -16.24931 -15.89560 -15.79905 -15.13618 -15.12475 -14.97254 -14.85560 -14.53490 -14.42489 -14.05860 -13.88352 -13.73462 -13.61117 -13.38390 -13.03404 -12.77824 -12.52471 -12.51113 -12.33627 -12.12075 -11.98010 -11.97238 -11.75648 -11.67804 -11.44341 -10.93407 -10.34591 -10.32122 -10.06073 -9.62053 -9.39524 -8.88737 -1.42624 -0.89639 -0.68083 -0.52119 -0.11319 0.13396 0.37654 0.69453 1.16870 1.31127 1.35575 1.47159 1.53679 1.79885 1.92461 2.12543 2.32587 2.44219 2.46855 2.82473 3.16812 3.37140 3.37771 3.45728 3.46111 3.59351 3.62692 3.69081 3.75258 3.94969 4.00745 4.07940 4.12323 4.17312 4.24734 4.31257 4.34258 4.37924 4.46230 4.52396 4.52918 4.65891 4.70512 4.71350 4.82693 4.93322 5.09181 5.19479 5.21911 5.45718 5.99776 6.17950 6.54823 6.82888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.185 3.815 4 C -0.211 4.211 5 C -0.045 4.045 6 C -0.137 4.137 7 C -0.079 4.079 8 O -0.564 6.564 9 Si 0.973 3.027 10 H -0.266 1.266 11 H -0.257 1.257 12 H -0.249 1.249 13 C 0.005 3.995 14 C -0.188 4.188 15 C 0.517 3.483 16 O -0.512 6.512 17 O -0.354 6.354 18 C 0.179 3.821 19 C -0.133 4.133 20 C -0.122 4.122 21 C 0.035 3.965 22 C -0.042 4.042 23 C -0.282 4.282 24 C 0.533 3.467 25 N -0.427 5.427 26 C -0.089 4.089 27 C 0.094 3.906 28 F -0.132 7.132 29 C -0.094 4.094 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.148 0.852 35 H 0.098 0.902 36 H 0.399 0.601 37 H 0.151 0.849 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 6.376 -5.256 9.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.222 6.222 3 C 0.136 3.864 4 C -0.229 4.229 5 C -0.062 4.062 6 C -0.137 4.137 7 C -0.189 4.189 8 O -0.373 6.373 9 Si 0.797 3.203 10 H -0.191 1.191 11 H -0.181 1.181 12 H -0.173 1.173 13 C -0.013 4.013 14 C -0.190 4.190 15 C 0.363 3.637 16 O -0.401 6.401 17 O -0.272 6.272 18 C 0.107 3.893 19 C -0.133 4.133 20 C -0.123 4.123 21 C 0.034 3.966 22 C -0.063 4.063 23 C -0.282 4.282 24 C 0.459 3.541 25 N -0.343 5.343 26 C -0.112 4.112 27 C 0.075 3.925 28 F -0.110 7.110 29 C -0.114 4.114 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.188 0.812 34 H 0.166 0.834 35 H 0.116 0.884 36 H 0.249 0.751 37 H 0.169 0.831 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.190 0.810 41 H 0.187 0.813 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.033 5.343 -4.495 8.607 hybrid contribution -0.320 0.894 1.387 1.681 sum -5.353 6.237 -3.108 8.788 Atomic orbital electron populations 1.23525 0.75889 1.05924 1.03112 1.86298 1.23774 1.25844 1.86289 1.19235 0.90466 0.85914 0.90748 1.21425 1.01989 0.90403 1.09122 1.21343 0.93849 0.98427 0.92617 1.19424 0.93306 0.94863 1.06148 1.24737 1.02199 1.00196 0.91723 1.86462 1.64851 1.43490 1.42538 0.85365 0.77849 0.76569 0.80514 1.19067 1.18118 1.17326 1.21208 1.01172 0.88996 0.89912 1.18538 0.89968 0.91875 1.18571 1.20971 0.80453 0.89462 0.72764 1.90897 1.72792 1.30142 1.46265 1.86553 1.19509 1.36336 1.84762 1.19680 0.80128 0.83564 1.05924 1.21504 0.92653 1.00658 0.98467 1.18771 0.91287 0.98587 1.03629 1.15464 0.86867 0.95894 0.98339 1.21417 0.89757 0.98764 0.96359 1.22192 0.98541 1.02568 1.04925 1.82722 0.41529 0.46338 0.83507 1.99363 1.26063 1.39482 0.69413 1.21386 1.02119 0.94029 0.93626 1.17358 0.91969 0.88216 0.94979 1.91581 1.88267 1.56291 1.74903 1.21647 0.94173 0.97332 0.98275 0.86869 0.90769 0.90488 0.81232 0.83446 0.88405 0.75063 0.83126 0.87015 0.86457 0.81012 0.81317 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 396. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.31 -1.90 8.57 -68.57 -0.59 -2.49 16 3 C 0.18 0.88 6.70 22.86 0.15 1.03 16 4 C -0.21 0.17 9.03 22.34 0.20 0.38 16 5 C -0.04 0.06 8.66 22.30 0.19 0.25 16 6 C -0.14 -0.05 5.42 -19.90 -0.11 -0.16 16 7 C -0.08 0.31 2.80 71.24 0.20 0.51 16 8 O -0.56 1.32 12.74 -148.98 -1.90 -0.58 16 9 Si 0.97 -4.65 25.05 68.60 1.72 -2.93 16 10 H -0.27 0.41 7.11 99.48 0.71 1.12 16 11 H -0.26 1.08 7.11 99.48 0.71 1.79 16 12 H -0.25 1.16 7.11 99.48 0.71 1.87 16 13 C 0.01 0.02 9.17 22.53 0.21 0.22 16 14 C -0.19 -1.18 5.89 -20.02 -0.12 -1.30 16 15 C 0.52 4.47 7.89 70.23 0.55 5.02 16 16 O -0.51 -6.77 14.95 26.81 0.40 -6.37 16 17 O -0.35 -1.95 9.43 -56.64 -0.53 -2.48 16 18 C 0.18 0.28 5.95 70.18 0.42 0.69 16 19 C -0.13 -0.30 13.74 31.12 0.43 0.12 16 20 C -0.12 -0.24 13.23 30.02 0.40 0.15 16 21 C 0.03 -0.01 5.72 -21.45 -0.12 -0.13 16 22 C -0.04 0.14 9.45 22.80 0.22 0.36 16 23 C -0.28 1.14 5.47 -21.40 -0.12 1.03 16 24 C 0.53 -3.84 20.42 69.07 1.41 -2.43 16 25 N -0.43 -3.97 24.93 37.02 0.92 -3.05 16 26 C -0.09 0.22 9.72 22.63 0.22 0.44 16 27 C 0.09 0.02 7.28 22.30 0.16 0.18 16 28 F -0.13 -0.37 17.26 44.97 0.78 0.40 16 29 C -0.09 0.03 9.72 22.62 0.22 0.25 16 30 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.07 -0.48 7.66 -2.38 -0.02 -0.50 16 32 H 0.08 -0.54 7.66 -2.39 -0.02 -0.56 16 33 H 0.17 -1.16 6.30 -2.91 -0.02 -1.18 16 34 H 0.15 -0.79 4.85 -2.91 -0.01 -0.81 16 35 H 0.10 -0.78 7.96 -2.39 -0.02 -0.80 16 36 H 0.40 -4.42 8.74 -74.05 -0.65 -5.07 16 37 H 0.15 0.22 7.61 -2.91 -0.02 0.20 16 38 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.17 -1.36 8.06 -2.91 -0.02 -1.39 16 41 H 0.17 -0.97 8.06 -2.91 -0.02 -0.99 16 42 H 0.16 -0.37 8.06 -2.91 -0.02 -0.39 16 Total: 0.00 -24.93 399.68 7.66 -17.27 By element: Atomic # 1 Polarization: -8.72 SS G_CDS: 1.23 Total: -7.49 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.62 Total: 7.70 kcal Atomic # 7 Polarization: -3.97 SS G_CDS: 0.92 Total: -3.05 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -2.62 Total: -11.91 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.78 Total: 0.40 kcal Atomic # 14 Polarization: -4.65 SS G_CDS: 1.72 Total: -2.93 kcal Total: -24.93 7.66 -17.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12496218_15358960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.092 kcal (2) G-P(sol) polarization free energy of solvation -24.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 224.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 231.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.14 seconds