Wall clock time and date at job start Tue Mar 9 2021 16:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47317 * 2 1 4 4 C 1.86298 * 109.47243 * 239.99750 * 2 1 3 5 5 C 1.86802 * 109.46861 * 120.00053 * 2 1 3 6 6 C 1.38242 * 119.99962 * 89.99904 * 5 2 1 7 7 C 1.38232 * 119.99753 * 180.02562 * 6 5 2 8 8 C 1.38232 * 120.00385 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00277 * 179.97438 * 8 7 6 10 10 O 1.45203 * 109.47070 * 90.00321 * 9 8 7 11 11 C 1.34729 * 117.00065 * 180.02562 * 10 9 8 12 12 O 1.21483 * 119.99808 * 359.97438 * 11 10 9 13 13 C 1.47597 * 119.99860 * 180.02562 * 11 10 9 14 14 C 1.39689 * 120.12218 * 0.02562 * 13 11 10 15 15 C 1.37841 * 119.87284 * 180.02562 * 14 13 11 16 16 C 1.38646 * 120.12550 * 0.02562 * 15 14 13 17 17 F 1.35095 * 119.88037 * 179.97438 * 16 15 14 18 18 C 1.38694 * 120.24906 * 359.97438 * 16 15 14 19 19 C 1.50696 * 119.94164 * 179.97438 * 18 16 15 20 20 O 1.42896 * 109.47220 * 194.99959 * 19 18 16 21 21 Si 1.86301 * 109.46719 * 314.99591 * 19 18 16 22 22 H 1.48506 * 109.47302 * 179.97438 * 21 19 18 23 23 H 1.48503 * 109.47334 * 60.00029 * 21 19 18 24 24 H 1.48500 * 109.47376 * 300.00026 * 21 19 18 25 25 C 1.37802 * 120.12165 * 0.25457 * 18 16 15 26 26 C 1.38240 * 119.99937 * 0.26241 * 8 7 6 27 27 C 1.38230 * 120.00272 * 270.02041 * 5 2 1 28 28 H 1.09000 * 109.46823 * 300.00075 * 1 2 3 29 29 H 1.08997 * 109.46787 * 60.00065 * 1 2 3 30 30 H 1.08999 * 109.47481 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46860 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47507 * 300.00117 * 3 2 1 33 33 H 1.09000 * 109.47235 * 60.00177 * 3 2 1 34 34 H 1.08999 * 109.47109 * 300.00506 * 4 2 1 35 35 H 1.09006 * 109.46918 * 59.99768 * 4 2 1 36 36 H 1.08994 * 109.47344 * 180.02562 * 4 2 1 37 37 H 1.08000 * 119.99760 * 0.02562 * 6 5 2 38 38 H 1.08003 * 119.99681 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.47305 * 330.00926 * 9 8 7 40 40 H 1.08994 * 109.47279 * 210.00337 * 9 8 7 41 41 H 1.07994 * 120.06326 * 359.97438 * 14 13 11 42 42 H 1.07997 * 119.93659 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.47524 * 74.99306 * 19 18 16 44 44 H 0.96708 * 114.00095 * 179.97438 * 20 19 18 45 45 H 1.08001 * 120.06400 * 179.74980 * 25 18 16 46 46 H 1.08002 * 120.00087 * 179.72146 * 26 8 7 47 47 H 1.08004 * 119.99795 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2433 1.4910 7 6 3.1762 -2.8950 2.6199 8 6 3.4066 -2.1841 3.7828 9 6 3.9077 -2.8947 5.0136 10 8 5.3598 -2.8958 5.0143 11 6 5.9705 -3.4967 6.0541 12 8 5.3080 -4.0055 6.9361 13 6 7.4444 -3.5359 6.1219 14 6 8.2086 -2.9503 5.1099 15 6 9.5847 -2.9904 5.1782 16 6 10.2105 -3.6109 6.2485 17 9 11.5595 -3.6477 6.3102 18 6 9.4568 -4.1940 7.2562 19 6 10.1442 -4.8671 8.4161 20 8 9.2030 -5.6782 9.1221 21 14 11.5313 -5.9361 7.7803 22 1 12.2092 -6.5990 8.9233 23 1 12.5093 -5.0933 7.0466 24 1 10.9815 -6.9676 6.8644 25 6 8.0804 -4.1640 7.1958 26 6 3.1716 -0.8223 3.8185 27 6 2.7156 -0.1698 2.6883 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5741 1.7563 0.0005 32 1 2.1208 2.2703 -0.8899 33 1 2.1208 2.2702 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1207 -0.3645 -2.4111 36 1 3.5740 -0.8787 -1.5209 37 1 2.5364 -2.7986 0.5823 38 1 3.3558 -3.9597 2.5932 39 1 3.5438 -3.9221 5.0135 40 1 3.5443 -2.3805 5.9033 41 1 7.7221 -2.4678 4.2751 42 1 10.1765 -2.5383 4.3961 43 1 10.5478 -4.1101 9.0883 44 1 9.5772 -6.1430 9.8831 45 1 7.4944 -4.6219 7.9790 46 1 3.3473 -0.2676 4.7284 47 1 2.5349 0.8946 2.7153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_12496220_9435856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:16:56 Heat of formation + Delta-G solvation = -147.210210 kcal Electronic energy + Delta-G solvation = -28611.998534 eV Core-core repulsion = 24376.902428 eV Total energy + Delta-G solvation = -4235.096106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 362.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.40899 -41.64718 -40.30027 -39.74742 -37.78986 -37.36873 -33.37146 -32.82414 -32.02293 -31.91779 -29.61232 -28.47207 -28.43776 -27.70327 -26.99462 -25.12572 -23.51222 -23.26511 -22.16577 -21.71787 -19.25485 -18.99386 -18.37792 -18.18018 -17.55884 -17.38368 -17.25078 -16.84863 -16.12642 -16.03709 -15.92747 -15.73773 -15.27010 -15.00950 -14.70314 -14.41900 -14.33312 -14.26203 -14.18606 -14.13340 -14.07515 -13.86627 -13.84665 -13.44650 -13.29192 -13.28870 -13.21011 -13.12773 -12.81904 -12.70830 -12.43531 -12.08080 -11.95182 -11.62386 -11.61350 -11.37278 -11.06498 -10.96443 -10.93415 -10.86450 -10.10612 -9.81410 -9.72381 -9.70308 -0.61008 -0.00010 0.09787 0.51381 1.05360 1.37730 1.43254 1.51459 1.61455 1.67987 1.82028 1.92317 1.98207 2.49751 2.51353 2.82383 2.92260 3.05118 3.42503 3.53677 3.69417 3.80350 3.81006 4.00265 4.08388 4.14281 4.22767 4.25327 4.33248 4.47676 4.58601 4.64539 4.67669 4.68921 4.72920 4.73437 4.74101 4.74116 4.74294 4.88371 4.96569 5.01643 5.08582 5.12214 5.31543 5.40415 5.44912 5.47391 5.51563 5.55390 5.59023 5.59184 6.07584 6.43352 6.72800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.110 3.890 10 O -0.347 6.347 11 C 0.511 3.489 12 O -0.499 6.499 13 C -0.137 4.137 14 C -0.034 4.034 15 C -0.159 4.159 16 C 0.124 3.876 17 F -0.120 7.120 18 C -0.124 4.124 19 C -0.078 4.078 20 O -0.544 6.544 21 Si 0.934 3.066 22 H -0.254 1.254 23 H -0.226 1.226 24 H -0.248 1.248 25 C 0.000 4.000 26 C -0.105 4.105 27 C -0.092 4.092 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.087 0.913 44 H 0.387 0.613 45 H 0.160 0.840 46 H 0.122 0.878 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 1.920 -2.086 2.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.091 4.091 9 C 0.037 3.963 10 O -0.264 6.264 11 C 0.356 3.644 12 O -0.387 6.387 13 C -0.138 4.138 14 C -0.052 4.052 15 C -0.178 4.178 16 C 0.105 3.895 17 F -0.098 7.098 18 C -0.125 4.125 19 C -0.188 4.188 20 O -0.350 6.350 21 Si 0.754 3.246 22 H -0.178 1.178 23 H -0.149 1.149 24 H -0.171 1.171 25 C -0.018 4.018 26 C -0.124 4.124 27 C -0.109 4.109 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.105 0.895 44 H 0.236 0.764 45 H 0.177 0.823 46 H 0.140 0.860 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.768 1.453 -2.545 3.029 hybrid contribution 0.143 -0.045 0.897 0.909 sum 0.910 1.408 -1.648 2.351 Atomic orbital electron populations 1.26127 1.20436 1.04606 1.04524 0.78178 0.66862 0.66114 0.63656 1.26135 1.06486 1.18542 1.04592 1.26137 1.06485 1.08061 1.15078 1.27495 1.02896 0.99525 1.10246 1.21086 0.97470 0.94664 0.97727 1.21167 0.98711 0.99930 0.92538 1.19472 1.01075 0.94206 0.94345 1.21896 0.76150 1.01458 0.96817 1.86595 1.23305 1.71148 1.45335 1.20972 0.88762 0.75196 0.79478 1.90881 1.66498 1.43001 1.38329 1.19184 0.89630 1.06309 0.98683 1.21401 0.92656 0.94029 0.97085 1.21129 0.95300 1.02612 0.98708 1.17801 0.77204 0.99100 0.95399 1.91602 1.28401 1.93705 1.96091 1.19258 0.94143 1.02726 0.96385 1.24532 0.99923 0.98933 0.95367 1.86400 1.37371 1.64174 1.47073 0.86134 0.77820 0.79079 0.81600 1.17806 1.14906 1.17106 1.20961 0.92739 0.92138 0.95963 1.21169 0.98738 0.93523 0.98921 1.21084 0.97491 0.99783 0.92588 0.91153 0.91006 0.91155 0.91031 0.90927 0.91162 0.91163 0.90928 0.91031 0.85837 0.86048 0.89968 0.89970 0.83105 0.83166 0.89510 0.76417 0.82280 0.86048 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.78 8.65 101.05 0.87 1.66 16 2 Si 1.06 -3.00 12.32 -169.99 -2.09 -5.09 16 3 C -0.45 0.94 8.53 101.05 0.86 1.81 16 4 C -0.45 0.94 8.53 101.05 0.86 1.80 16 5 C -0.36 0.19 4.59 -39.58 -0.18 0.00 16 6 C -0.09 0.00 9.29 -39.58 -0.37 -0.37 16 7 C -0.11 -0.09 9.70 -39.59 -0.38 -0.47 16 8 C -0.09 -0.11 5.52 -104.62 -0.58 -0.69 16 9 C 0.11 0.15 5.60 36.00 0.20 0.36 16 10 O -0.35 -0.81 9.45 -40.57 -0.38 -1.19 16 11 C 0.51 1.71 7.89 34.55 0.27 1.99 16 12 O -0.50 -2.92 16.13 -19.25 -0.31 -3.23 16 13 C -0.14 -0.27 5.87 -104.98 -0.62 -0.88 16 14 C -0.03 0.00 9.61 -39.18 -0.38 -0.38 16 15 C -0.16 0.07 10.01 -39.58 -0.40 -0.32 16 16 C 0.12 0.11 6.67 -39.26 -0.26 -0.15 16 17 F -0.12 -0.15 12.82 2.25 0.03 -0.12 16 18 C -0.12 -0.16 5.15 -104.61 -0.54 -0.70 16 19 C -0.08 0.02 2.96 36.00 0.11 0.13 16 20 O -0.54 0.13 11.47 -35.23 -0.40 -0.27 16 21 Si 0.93 -0.01 26.09 -169.99 -4.43 -4.44 16 22 H -0.25 0.04 7.11 56.52 0.40 0.44 16 23 H -0.23 -0.17 5.28 56.52 0.30 0.13 16 24 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 25 C 0.00 0.00 8.91 -39.19 -0.35 -0.35 16 26 C -0.11 -0.08 9.70 -39.58 -0.38 -0.47 16 27 C -0.09 0.00 9.29 -39.59 -0.37 -0.37 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 34 H 0.07 -0.16 7.69 -51.93 -0.40 -0.55 16 35 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 38 H 0.12 -0.05 8.06 -52.48 -0.42 -0.47 16 39 H 0.08 0.09 8.08 -51.93 -0.42 -0.33 16 40 H 0.08 0.08 8.08 -51.93 -0.42 -0.34 16 41 H 0.15 -0.24 7.61 -52.49 -0.40 -0.64 16 42 H 0.15 -0.40 8.06 -52.49 -0.42 -0.82 16 43 H 0.09 -0.18 7.96 -51.93 -0.41 -0.59 16 44 H 0.39 -1.78 8.74 45.56 0.40 -1.38 16 45 H 0.16 0.47 6.71 -52.49 -0.35 0.12 16 46 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 47 H 0.12 -0.24 7.43 -52.48 -0.39 -0.63 16 LS Contribution 401.59 15.07 6.05 6.05 Total: 0.00 -6.92 401.59 -9.41 -16.33 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: -6.25 Total: -10.61 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.62 Total: 2.58 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -1.10 Total: -4.70 kcal Atomic # 9 Polarization: -0.15 SS G_CDS: 0.03 Total: -0.12 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: -6.53 Total: -9.53 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -6.92 -9.41 -16.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12496220_9435856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.878 kcal (2) G-P(sol) polarization free energy of solvation -6.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds