Wall clock time and date at job start Tue Mar 9 2021 16:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86295 * 109.47317 * 2 1 4 4 C 1.86298 * 109.47243 * 239.99750 * 2 1 3 5 5 C 1.86802 * 109.46861 * 120.00053 * 2 1 3 6 6 C 1.38242 * 119.99962 * 89.99904 * 5 2 1 7 7 C 1.38232 * 119.99753 * 180.02562 * 6 5 2 8 8 C 1.38232 * 120.00385 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00277 * 179.97438 * 8 7 6 10 10 O 1.45203 * 109.47070 * 90.00321 * 9 8 7 11 11 C 1.34729 * 117.00065 * 180.02562 * 10 9 8 12 12 O 1.21483 * 119.99808 * 359.97438 * 11 10 9 13 13 C 1.47597 * 119.99860 * 180.02562 * 11 10 9 14 14 C 1.39689 * 120.12218 * 0.02562 * 13 11 10 15 15 C 1.37841 * 119.87284 * 180.02562 * 14 13 11 16 16 C 1.38646 * 120.12550 * 0.02562 * 15 14 13 17 17 F 1.35095 * 119.88037 * 179.97438 * 16 15 14 18 18 C 1.38694 * 120.24906 * 359.97438 * 16 15 14 19 19 C 1.50696 * 119.94164 * 179.97438 * 18 16 15 20 20 O 1.42896 * 109.47220 * 194.99959 * 19 18 16 21 21 Si 1.86301 * 109.46719 * 314.99591 * 19 18 16 22 22 H 1.48506 * 109.47302 * 179.97438 * 21 19 18 23 23 H 1.48503 * 109.47334 * 60.00029 * 21 19 18 24 24 H 1.48500 * 109.47376 * 300.00026 * 21 19 18 25 25 C 1.37802 * 120.12165 * 0.25457 * 18 16 15 26 26 C 1.38240 * 119.99937 * 0.26241 * 8 7 6 27 27 C 1.38230 * 120.00272 * 270.02041 * 5 2 1 28 28 H 1.09000 * 109.46823 * 300.00075 * 1 2 3 29 29 H 1.08997 * 109.46787 * 60.00065 * 1 2 3 30 30 H 1.08999 * 109.47481 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46860 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47507 * 300.00117 * 3 2 1 33 33 H 1.09000 * 109.47235 * 60.00177 * 3 2 1 34 34 H 1.08999 * 109.47109 * 300.00506 * 4 2 1 35 35 H 1.09006 * 109.46918 * 59.99768 * 4 2 1 36 36 H 1.08994 * 109.47344 * 180.02562 * 4 2 1 37 37 H 1.08000 * 119.99760 * 0.02562 * 6 5 2 38 38 H 1.08003 * 119.99681 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.47305 * 330.00926 * 9 8 7 40 40 H 1.08994 * 109.47279 * 210.00337 * 9 8 7 41 41 H 1.07994 * 120.06326 * 359.97438 * 14 13 11 42 42 H 1.07997 * 119.93659 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.47524 * 74.99306 * 19 18 16 44 44 H 0.96708 * 114.00095 * 179.97438 * 20 19 18 45 45 H 1.08001 * 120.06400 * 179.74980 * 25 18 16 46 46 H 1.08002 * 120.00087 * 179.72146 * 26 8 7 47 47 H 1.08004 * 119.99795 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2433 1.4910 7 6 3.1762 -2.8950 2.6199 8 6 3.4066 -2.1841 3.7828 9 6 3.9077 -2.8947 5.0136 10 8 5.3598 -2.8958 5.0143 11 6 5.9705 -3.4967 6.0541 12 8 5.3080 -4.0055 6.9361 13 6 7.4444 -3.5359 6.1219 14 6 8.2086 -2.9503 5.1099 15 6 9.5847 -2.9904 5.1782 16 6 10.2105 -3.6109 6.2485 17 9 11.5595 -3.6477 6.3102 18 6 9.4568 -4.1940 7.2562 19 6 10.1442 -4.8671 8.4161 20 8 9.2030 -5.6782 9.1221 21 14 11.5313 -5.9361 7.7803 22 1 12.2092 -6.5990 8.9233 23 1 12.5093 -5.0933 7.0466 24 1 10.9815 -6.9676 6.8644 25 6 8.0804 -4.1640 7.1958 26 6 3.1716 -0.8223 3.8185 27 6 2.7156 -0.1698 2.6883 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5741 1.7563 0.0005 32 1 2.1208 2.2703 -0.8899 33 1 2.1208 2.2702 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1207 -0.3645 -2.4111 36 1 3.5740 -0.8787 -1.5209 37 1 2.5364 -2.7986 0.5823 38 1 3.3558 -3.9597 2.5932 39 1 3.5438 -3.9221 5.0135 40 1 3.5443 -2.3805 5.9033 41 1 7.7221 -2.4678 4.2751 42 1 10.1765 -2.5383 4.3961 43 1 10.5478 -4.1101 9.0883 44 1 9.5772 -6.1430 9.8831 45 1 7.4944 -4.6219 7.9790 46 1 3.3473 -0.2676 4.7284 47 1 2.5349 0.8946 2.7153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_12496220_9435856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:16:55 Heat of formation + Delta-G solvation = -137.217486 kcal Electronic energy + Delta-G solvation = -28611.565217 eV Core-core repulsion = 24376.902428 eV Total energy + Delta-G solvation = -4234.662789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 362.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.47418 -41.84595 -40.32894 -39.79517 -37.77304 -37.59281 -33.41938 -32.84407 -32.09051 -31.89003 -29.43323 -28.27454 -28.25621 -27.76372 -27.00481 -25.24113 -23.49056 -23.29868 -22.18313 -21.85807 -19.29732 -19.11747 -18.42765 -18.27503 -17.68881 -17.49690 -17.27615 -16.89831 -16.12234 -16.03538 -15.98840 -15.74020 -15.31387 -15.02374 -14.74864 -14.41844 -14.34978 -14.22102 -14.18461 -14.06347 -14.02680 -13.81243 -13.70904 -13.39628 -13.30534 -13.14139 -13.09461 -12.94783 -12.85081 -12.69740 -12.47815 -12.10851 -12.01694 -11.83508 -11.74971 -11.41369 -10.95648 -10.91055 -10.77915 -10.73966 -10.16647 -9.81188 -9.72246 -9.70438 -0.71595 -0.03968 0.08801 0.51714 1.03320 1.25011 1.39694 1.48070 1.51843 1.85059 1.89084 2.04478 2.13834 2.41087 2.67944 2.84991 2.92920 3.06091 3.42623 3.44727 3.69094 3.71970 3.76230 3.98105 4.09301 4.15113 4.21051 4.25702 4.33152 4.53425 4.55314 4.70465 4.73722 4.86173 4.86182 4.86315 4.90513 4.91391 4.91841 4.92191 4.92531 4.98031 5.03193 5.15718 5.16581 5.40084 5.52107 5.56253 5.58876 5.61111 5.69611 5.72806 6.10993 6.49682 6.71449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.130 2.870 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.371 4.371 6 C -0.102 4.102 7 C -0.119 4.119 8 C -0.104 4.104 9 C 0.109 3.891 10 O -0.344 6.344 11 C 0.514 3.486 12 O -0.532 6.532 13 C -0.149 4.149 14 C -0.026 4.026 15 C -0.150 4.150 16 C 0.118 3.882 17 F -0.121 7.121 18 C -0.133 4.133 19 C -0.078 4.078 20 O -0.560 6.560 21 Si 0.964 3.036 22 H -0.249 1.249 23 H -0.235 1.235 24 H -0.280 1.280 25 C -0.012 4.012 26 C -0.119 4.119 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.108 0.892 44 H 0.405 0.595 45 H 0.145 0.855 46 H 0.128 0.872 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 2.888 -3.058 4.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.317 2.683 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.410 4.410 6 C -0.119 4.119 7 C -0.137 4.137 8 C -0.104 4.104 9 C 0.036 3.964 10 O -0.261 6.261 11 C 0.360 3.640 12 O -0.423 6.423 13 C -0.150 4.150 14 C -0.044 4.044 15 C -0.169 4.169 16 C 0.099 3.901 17 F -0.100 7.100 18 C -0.134 4.134 19 C -0.187 4.187 20 O -0.369 6.369 21 Si 0.786 3.214 22 H -0.173 1.173 23 H -0.158 1.158 24 H -0.205 1.205 25 C -0.030 4.030 26 C -0.137 4.137 27 C -0.119 4.119 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.186 0.814 42 H 0.195 0.805 43 H 0.125 0.875 44 H 0.256 0.744 45 H 0.163 0.837 46 H 0.146 0.854 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.290 2.418 -3.492 4.439 hybrid contribution -0.023 -0.355 1.165 1.218 sum 1.267 2.062 -2.328 3.358 Atomic orbital electron populations 1.26307 1.21747 1.04440 1.04561 0.77132 0.65038 0.64625 0.61547 1.26277 1.06480 1.19328 1.04875 1.26283 1.06474 1.08480 1.15755 1.28086 1.02088 0.99588 1.11212 1.21395 0.97216 0.95200 0.98120 1.21373 0.99083 1.00460 0.92829 1.19523 1.01917 0.94609 0.94373 1.21961 0.75658 1.01564 0.97233 1.86594 1.23900 1.70738 1.44836 1.21263 0.89323 0.74392 0.79038 1.90857 1.67288 1.44603 1.39539 1.19223 0.88920 1.07349 0.99557 1.21567 0.92796 0.93294 0.96766 1.21422 0.95196 1.01556 0.98680 1.17947 0.77146 0.99309 0.95729 1.91600 1.28497 1.93747 1.96128 1.19457 0.93894 1.02841 0.97191 1.24568 0.99414 0.99298 0.95432 1.86377 1.38028 1.64500 1.48036 0.85729 0.77207 0.77776 0.80655 1.17274 1.15846 1.20508 1.20872 0.93160 0.92932 0.96055 1.21380 0.99056 0.93537 0.99720 1.21397 0.97207 1.00833 0.92467 0.91418 0.90692 0.91444 0.91204 0.90684 0.90902 0.90937 0.90686 0.91215 0.84112 0.85467 0.90053 0.89967 0.81419 0.80518 0.87468 0.74400 0.83685 0.85383 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.91 8.65 113.37 0.98 2.89 16 2 Si 1.13 -7.39 12.32 68.60 0.85 -6.54 16 3 C -0.46 2.39 8.53 113.37 0.97 3.36 16 4 C -0.46 2.35 8.53 113.37 0.97 3.31 16 5 C -0.37 0.54 4.59 22.27 0.10 0.65 16 6 C -0.10 0.01 9.29 22.27 0.21 0.22 16 7 C -0.12 -0.27 9.70 22.27 0.22 -0.05 16 8 C -0.10 -0.36 5.52 -19.87 -0.11 -0.47 16 9 C 0.11 0.47 5.60 71.23 0.40 0.87 16 10 O -0.34 -2.00 9.45 -56.39 -0.53 -2.53 16 11 C 0.51 4.27 7.89 70.29 0.55 4.83 16 12 O -0.53 -7.46 16.13 19.89 0.32 -7.14 16 13 C -0.15 -0.73 5.87 -20.10 -0.12 -0.85 16 14 C -0.03 0.01 9.61 22.53 0.22 0.23 16 15 C -0.15 0.28 10.01 22.27 0.22 0.50 16 16 C 0.12 0.18 6.67 22.48 0.15 0.33 16 17 F -0.12 -0.25 12.82 44.97 0.58 0.33 16 18 C -0.13 -0.43 5.15 -19.86 -0.10 -0.53 16 19 C -0.08 0.03 2.96 71.23 0.21 0.24 16 20 O -0.56 -0.07 11.47 -148.98 -1.71 -1.78 16 21 Si 0.96 0.24 26.09 68.60 1.79 2.03 16 22 H -0.25 0.19 7.11 99.48 0.71 0.90 16 23 H -0.24 -0.35 5.28 99.48 0.53 0.18 16 24 H -0.28 -1.50 7.11 99.48 0.71 -0.79 16 25 C -0.01 -0.07 8.91 22.53 0.20 0.13 16 26 C -0.12 -0.25 9.70 22.27 0.22 -0.03 16 27 C -0.10 0.02 9.29 22.27 0.21 0.23 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.24 16 31 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 33 H 0.07 -0.40 7.69 -2.39 -0.02 -0.42 16 34 H 0.07 -0.39 7.69 -2.39 -0.02 -0.41 16 35 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 37 H 0.14 -0.62 7.43 -2.91 -0.02 -0.64 16 38 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 39 H 0.08 0.33 8.08 -2.39 -0.02 0.31 16 40 H 0.08 0.31 8.08 -2.39 -0.02 0.30 16 41 H 0.17 -0.68 7.61 -2.91 -0.02 -0.70 16 42 H 0.18 -1.31 8.06 -2.91 -0.02 -1.33 16 43 H 0.11 -0.50 7.96 -2.39 -0.02 -0.52 16 44 H 0.40 -3.66 8.74 -74.05 -0.65 -4.31 16 45 H 0.15 1.21 6.71 -2.91 -0.02 1.19 16 46 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 47 H 0.14 -0.65 7.43 -2.91 -0.02 -0.67 16 Total: 0.00 -16.84 401.59 7.69 -9.15 By element: Atomic # 1 Polarization: -10.27 SS G_CDS: 0.91 Total: -9.36 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 5.49 Total: 15.84 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.92 Total: -11.45 kcal Atomic # 9 Polarization: -0.25 SS G_CDS: 0.58 Total: 0.33 kcal Atomic # 14 Polarization: -7.14 SS G_CDS: 2.63 Total: -4.51 kcal Total: -16.84 7.69 -9.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_12496220_9435856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.069 kcal (2) G-P(sol) polarization free energy of solvation -16.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds