Wall clock time and date at job start Tue Mar 9 2021 15:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35990 * 116.99757 * 2 1 4 4 C 1.38530 * 120.07406 * 0.02562 * 3 2 1 5 5 C 1.38287 * 119.99801 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.92402 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.47294 * 255.00122 * 6 5 4 8 8 Si 1.86301 * 109.47146 * 15.00078 * 6 5 4 9 9 H 1.48506 * 109.47302 * 299.99754 * 8 6 5 10 10 H 1.48503 * 109.47334 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47376 * 59.99883 * 8 6 5 12 12 C 1.38200 * 120.14934 * 0.26862 * 5 4 3 13 13 N 1.48004 * 119.93028 * 179.70125 * 12 5 4 14 14 O 1.21796 * 120.00300 * 179.97438 * 13 12 5 15 15 O 1.21800 * 119.99851 * 0.02562 * 13 12 5 16 16 C 1.38296 * 120.14609 * 359.45901 * 12 5 4 17 17 C 1.38521 * 119.99452 * 0.53830 * 16 12 5 18 18 O 1.35995 * 120.06984 * 179.75501 * 17 16 12 19 19 C 1.42897 * 117.00019 * 359.97438 * 18 17 16 20 20 C 1.50702 * 109.47367 * 180.02562 * 19 18 17 21 21 O 1.20832 * 119.99571 * 0.02562 * 20 19 18 22 22 O 1.34225 * 120.00698 * 180.02562 * 20 19 18 23 23 C 1.45194 * 117.00307 * 180.02562 * 22 20 19 24 24 Si 1.86303 * 109.47273 * 75.00214 * 23 22 20 25 25 C 1.86300 * 109.47200 * 59.99793 * 24 23 22 26 26 C 1.86297 * 109.47183 * 180.02562 * 24 23 22 27 27 C 1.86300 * 109.46552 * 299.99762 * 24 23 22 28 28 H 1.08994 * 109.47165 * 299.99066 * 1 2 3 29 29 H 1.09001 * 109.47235 * 59.99954 * 1 2 3 30 30 H 1.09005 * 109.46488 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.99911 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47485 * 135.00031 * 6 5 4 33 33 H 0.96699 * 113.99816 * 179.97438 * 7 6 5 34 34 H 1.08003 * 119.99960 * 180.27647 * 16 12 5 35 35 H 1.08993 * 109.47682 * 300.00581 * 19 18 17 36 36 H 1.08998 * 109.46760 * 60.00661 * 19 18 17 37 37 H 1.09005 * 109.46787 * 195.00102 * 23 22 20 38 38 H 1.08995 * 109.47300 * 314.99403 * 23 22 20 39 39 H 1.09000 * 109.47219 * 60.00386 * 25 24 23 40 40 H 1.09001 * 109.46836 * 180.02562 * 25 24 23 41 41 H 1.08999 * 109.47040 * 300.00105 * 25 24 23 42 42 H 1.08995 * 109.47454 * 59.99149 * 26 24 23 43 43 H 1.08996 * 109.47106 * 180.02562 * 26 24 23 44 44 H 1.09005 * 109.46723 * 299.99793 * 26 24 23 45 45 H 1.09000 * 109.47075 * 60.00589 * 27 24 23 46 46 H 1.09005 * 109.46541 * 180.02562 * 27 24 23 47 47 H 1.08994 * 109.47573 * 299.99918 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3745 0.0005 5 6 1.9227 3.6058 0.0011 6 6 1.1019 4.8696 0.0011 7 8 1.1353 5.4594 -1.3002 8 14 -0.6594 4.4662 0.4549 9 1 -1.2197 3.5121 -0.5355 10 1 -1.4681 5.7117 0.4556 11 1 -0.6942 3.8534 1.8071 12 6 3.3027 3.6800 -0.0045 13 7 3.9713 5.0004 -0.0106 14 8 5.1874 5.0673 -0.0151 15 8 3.3053 6.0202 -0.0102 16 6 4.0605 2.5231 0.0006 17 6 3.4363 1.2864 0.0001 18 8 4.1799 0.1478 0.0001 19 6 5.6007 0.3009 0.0001 20 6 6.2524 -1.0580 -0.0006 21 8 5.5700 -2.0552 -0.0014 22 8 7.5907 -1.1606 -0.0002 23 6 8.1491 -2.5009 -0.0014 24 14 7.9690 -3.2471 -1.6989 25 6 8.8771 -2.1949 -2.9394 26 6 8.6848 -4.9671 -1.7002 27 6 6.1642 -3.3259 -2.1541 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2148 2.3193 0.0005 32 1 1.5131 5.5700 0.7281 33 1 0.6266 6.2784 -1.3740 34 1 5.1388 2.5838 0.0007 35 1 5.9070 0.8507 -0.8898 36 1 5.9069 0.8506 0.8901 37 1 9.2051 -2.4547 0.2650 38 1 7.6179 -3.1165 0.7245 39 1 9.9330 -2.1488 -2.6731 40 1 8.7713 -2.6314 -3.9326 41 1 8.4578 -1.1888 -2.9385 42 1 8.1532 -5.5825 -0.9744 43 1 8.5798 -5.4036 -2.6935 44 1 9.7407 -4.9214 -1.4336 45 1 5.7450 -2.3197 -2.1533 46 1 6.0588 -3.7630 -3.1471 47 1 5.6329 -3.9415 -1.4284 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4066032_4858416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:54:57 Heat of formation + Delta-G solvation = -174.062128 kcal Electronic energy + Delta-G solvation = -32874.905081 eV Core-core repulsion = 28152.622306 eV Total energy + Delta-G solvation = -4722.282775 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 373.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.22221 -42.17171 -41.53788 -39.97343 -39.15439 -37.68586 -37.36362 -37.06441 -32.85360 -32.62469 -30.76466 -29.67203 -29.06959 -28.52659 -28.39066 -27.88679 -27.63946 -25.74951 -24.01146 -23.09992 -22.14185 -20.73317 -19.68590 -19.52066 -18.82943 -18.79951 -18.34777 -18.25088 -18.15052 -17.83991 -17.30668 -17.28079 -16.68691 -16.50889 -16.01768 -15.65690 -15.16581 -14.89366 -14.67025 -14.46167 -14.33418 -14.21937 -14.04601 -14.01156 -13.84419 -13.64737 -13.42607 -13.32105 -13.10989 -13.10228 -13.03827 -12.78322 -12.66433 -12.49762 -12.46304 -12.39317 -12.23274 -12.21594 -11.92630 -11.82188 -11.53189 -10.96663 -10.81594 -10.53994 -10.49991 -10.31845 -9.54691 -1.19525 -0.49819 0.34286 0.44753 0.78263 0.86881 0.99256 1.20845 1.25831 1.43535 1.66397 1.69582 1.71665 1.78176 1.86896 2.19362 2.46771 2.83420 3.09185 3.22202 3.37596 3.54685 3.60408 3.64475 3.67659 3.81704 3.88086 3.92521 3.94184 4.09833 4.15847 4.24564 4.36276 4.55923 4.59037 4.62339 4.64243 4.67482 4.68734 4.70728 4.84857 4.91174 5.20394 5.38582 5.39284 5.46629 5.49309 5.69915 5.89781 6.48678 6.61399 6.81692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.284 6.284 3 C 0.173 3.827 4 C -0.186 4.186 5 C 0.008 3.992 6 C -0.091 4.091 7 O -0.532 6.532 8 Si 0.933 3.067 9 H -0.246 1.246 10 H -0.241 1.241 11 H -0.244 1.244 12 C -0.023 4.023 13 N 0.036 4.964 14 O -0.172 6.172 15 O -0.134 6.134 16 C -0.116 4.116 17 C 0.110 3.890 18 O -0.269 6.269 19 C 0.058 3.942 20 C 0.448 3.552 21 O -0.463 6.463 22 O -0.331 6.331 23 C -0.237 4.237 24 Si 0.999 3.001 25 C -0.446 4.446 26 C -0.446 4.446 27 C -0.437 4.437 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.103 0.897 33 H 0.388 0.612 34 H 0.170 0.830 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 -1.512 0.702 2.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.196 6.196 3 C 0.124 3.876 4 C -0.205 4.205 5 C 0.006 3.994 6 C -0.201 4.201 7 O -0.339 6.339 8 Si 0.753 3.247 9 H -0.169 1.169 10 H -0.164 1.164 11 H -0.167 1.167 12 C -0.107 4.107 13 N 0.555 4.445 14 O -0.383 6.383 15 O -0.354 6.354 16 C -0.136 4.136 17 C 0.063 3.937 18 O -0.182 6.182 19 C -0.018 4.018 20 C 0.288 3.712 21 O -0.348 6.348 22 O -0.247 6.247 23 C -0.356 4.356 24 Si 1.195 2.805 25 C -0.554 4.554 26 C -0.554 4.554 27 C -0.545 4.545 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.176 0.824 32 H 0.121 0.879 33 H 0.237 0.763 34 H 0.187 0.813 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.126 -3.618 0.856 4.858 hybrid contribution 0.292 1.046 0.124 1.093 sum -2.834 -2.573 0.980 3.951 Atomic orbital electron populations 1.23400 0.76906 1.05706 1.02058 1.86327 1.22385 1.24247 1.86595 1.18379 0.88954 0.85808 0.94431 1.21016 1.01208 0.89793 1.08507 1.18895 0.90723 0.95050 0.94748 1.24934 1.09296 0.94399 0.91463 1.86448 1.76562 1.44011 1.26905 0.85979 0.75311 0.82394 0.80971 1.16943 1.16436 1.16744 1.20354 0.91831 0.83235 1.15280 1.43270 1.00962 1.02467 0.97813 1.94556 0.95654 1.93696 1.54384 1.94495 1.64688 1.24186 1.52030 1.20819 1.02345 0.88878 1.01559 1.17728 0.88134 0.85046 1.02819 1.86249 1.16549 1.26576 1.88834 1.22053 0.79691 0.93876 1.06171 1.22657 0.82123 0.91156 0.75219 1.90753 1.63866 1.37980 1.42193 1.86365 1.21089 1.33431 1.83815 1.28448 1.01532 0.84906 1.20672 0.79711 0.68585 0.67393 0.64790 1.26065 1.08259 1.09622 1.11480 1.26034 1.06835 1.17516 1.05064 1.26253 1.18451 1.04898 1.04938 0.91815 0.91665 0.86674 0.82365 0.87897 0.76297 0.81295 0.86935 0.86941 0.86773 0.89856 0.90969 0.90891 0.91088 0.90932 0.90578 0.90996 0.91628 0.91770 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.28 -0.30 10.28 -34.19 -0.35 -0.65 16 3 C 0.17 0.15 6.70 -39.12 -0.26 -0.11 16 4 C -0.19 0.02 7.65 -39.46 -0.30 -0.28 16 5 C 0.01 0.01 5.29 -104.62 -0.55 -0.55 16 6 C -0.09 0.03 1.73 36.01 0.06 0.10 16 7 O -0.53 -0.09 11.75 -55.61 -0.65 -0.75 16 8 Si 0.93 -1.83 25.49 -169.99 -4.33 -6.16 16 9 H -0.25 0.46 6.73 56.52 0.38 0.84 16 10 H -0.24 0.43 7.11 56.52 0.40 0.83 16 11 H -0.24 0.41 7.11 56.52 0.40 0.82 16 12 C -0.02 -0.05 6.85 -79.95 -0.55 -0.59 16 13 N 0.04 0.14 4.45 33.96 0.15 0.30 16 14 O -0.17 -0.82 18.44 -29.46 -0.54 -1.37 16 15 O -0.13 -0.57 14.61 -36.00 -0.53 -1.10 16 16 C -0.12 -0.04 8.54 -39.46 -0.34 -0.38 16 17 C 0.11 0.10 6.70 -39.12 -0.26 -0.16 16 18 O -0.27 -0.43 9.46 -47.37 -0.45 -0.88 16 19 C 0.06 -0.07 5.33 36.01 0.19 0.12 16 20 C 0.45 0.47 6.82 36.01 0.25 0.71 16 21 O -0.46 -1.72 12.18 -25.48 -0.31 -2.03 16 22 O -0.33 -0.06 9.92 -39.24 -0.39 -0.45 16 23 C -0.24 0.26 5.40 101.05 0.55 0.80 16 24 Si 1.00 -1.87 12.12 -169.99 -2.06 -3.93 16 25 C -0.45 0.60 8.65 101.05 0.87 1.47 16 26 C -0.45 0.74 8.65 101.05 0.87 1.62 16 27 C -0.44 -0.38 7.10 101.05 0.72 0.34 16 28 H 0.06 -0.26 7.66 -51.93 -0.40 -0.66 16 29 H 0.06 -0.24 7.66 -51.93 -0.40 -0.64 16 30 H 0.12 -0.48 8.14 -51.93 -0.42 -0.90 16 31 H 0.16 -0.33 3.12 -52.49 -0.16 -0.50 16 32 H 0.10 -0.07 6.09 -51.93 -0.32 -0.39 16 33 H 0.39 -1.59 8.74 45.56 0.40 -1.19 16 34 H 0.17 -0.30 5.85 -52.48 -0.31 -0.60 16 35 H 0.11 -0.41 7.66 -51.93 -0.40 -0.81 16 36 H 0.11 -0.41 7.66 -51.93 -0.40 -0.81 16 37 H 0.11 -0.34 7.96 -51.93 -0.41 -0.75 16 38 H 0.08 -0.05 7.52 -51.93 -0.39 -0.44 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 42 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 43 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 45 H 0.06 0.13 6.28 -51.93 -0.33 -0.19 16 46 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 47 H 0.08 0.17 7.43 -51.93 -0.39 -0.22 16 LS Contribution 392.38 15.07 5.91 5.91 Total: 0.00 -9.28 392.38 -6.94 -16.22 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: -5.63 Total: -9.19 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 2.24 Total: 4.06 kcal Atomic # 7 Polarization: 0.14 SS G_CDS: 0.15 Total: 0.30 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -3.22 Total: -7.20 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: -6.39 Total: -10.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -9.28 -6.94 -16.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4066032_4858416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.843 kcal (2) G-P(sol) polarization free energy of solvation -9.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds