Wall clock time and date at job start Tue Mar 9 2021 15:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35990 * 116.99757 * 2 1 4 4 C 1.38530 * 120.07406 * 0.02562 * 3 2 1 5 5 C 1.38287 * 119.99801 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.92402 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.47294 * 255.00122 * 6 5 4 8 8 Si 1.86301 * 109.47146 * 15.00078 * 6 5 4 9 9 H 1.48506 * 109.47302 * 299.99754 * 8 6 5 10 10 H 1.48503 * 109.47334 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47376 * 59.99883 * 8 6 5 12 12 C 1.38200 * 120.14934 * 0.26862 * 5 4 3 13 13 N 1.48004 * 119.93028 * 179.70125 * 12 5 4 14 14 O 1.21796 * 120.00300 * 179.97438 * 13 12 5 15 15 O 1.21800 * 119.99851 * 0.02562 * 13 12 5 16 16 C 1.38296 * 120.14609 * 359.45901 * 12 5 4 17 17 C 1.38521 * 119.99452 * 0.53830 * 16 12 5 18 18 O 1.35995 * 120.06984 * 179.75501 * 17 16 12 19 19 C 1.42897 * 117.00019 * 359.97438 * 18 17 16 20 20 C 1.50702 * 109.47367 * 180.02562 * 19 18 17 21 21 O 1.20832 * 119.99571 * 0.02562 * 20 19 18 22 22 O 1.34225 * 120.00698 * 180.02562 * 20 19 18 23 23 C 1.45194 * 117.00307 * 180.02562 * 22 20 19 24 24 Si 1.86303 * 109.47273 * 75.00214 * 23 22 20 25 25 C 1.86300 * 109.47200 * 59.99793 * 24 23 22 26 26 C 1.86297 * 109.47183 * 180.02562 * 24 23 22 27 27 C 1.86300 * 109.46552 * 299.99762 * 24 23 22 28 28 H 1.08994 * 109.47165 * 299.99066 * 1 2 3 29 29 H 1.09001 * 109.47235 * 59.99954 * 1 2 3 30 30 H 1.09005 * 109.46488 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.99911 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47485 * 135.00031 * 6 5 4 33 33 H 0.96699 * 113.99816 * 179.97438 * 7 6 5 34 34 H 1.08003 * 119.99960 * 180.27647 * 16 12 5 35 35 H 1.08993 * 109.47682 * 300.00581 * 19 18 17 36 36 H 1.08998 * 109.46760 * 60.00661 * 19 18 17 37 37 H 1.09005 * 109.46787 * 195.00102 * 23 22 20 38 38 H 1.08995 * 109.47300 * 314.99403 * 23 22 20 39 39 H 1.09000 * 109.47219 * 60.00386 * 25 24 23 40 40 H 1.09001 * 109.46836 * 180.02562 * 25 24 23 41 41 H 1.08999 * 109.47040 * 300.00105 * 25 24 23 42 42 H 1.08995 * 109.47454 * 59.99149 * 26 24 23 43 43 H 1.08996 * 109.47106 * 180.02562 * 26 24 23 44 44 H 1.09005 * 109.46723 * 299.99793 * 26 24 23 45 45 H 1.09000 * 109.47075 * 60.00589 * 27 24 23 46 46 H 1.09005 * 109.46541 * 180.02562 * 27 24 23 47 47 H 1.08994 * 109.47573 * 299.99918 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3745 0.0005 5 6 1.9227 3.6058 0.0011 6 6 1.1019 4.8696 0.0011 7 8 1.1353 5.4594 -1.3002 8 14 -0.6594 4.4662 0.4549 9 1 -1.2197 3.5121 -0.5355 10 1 -1.4681 5.7117 0.4556 11 1 -0.6942 3.8534 1.8071 12 6 3.3027 3.6800 -0.0045 13 7 3.9713 5.0004 -0.0106 14 8 5.1874 5.0673 -0.0151 15 8 3.3053 6.0202 -0.0102 16 6 4.0605 2.5231 0.0006 17 6 3.4363 1.2864 0.0001 18 8 4.1799 0.1478 0.0001 19 6 5.6007 0.3009 0.0001 20 6 6.2524 -1.0580 -0.0006 21 8 5.5700 -2.0552 -0.0014 22 8 7.5907 -1.1606 -0.0002 23 6 8.1491 -2.5009 -0.0014 24 14 7.9690 -3.2471 -1.6989 25 6 8.8771 -2.1949 -2.9394 26 6 8.6848 -4.9671 -1.7002 27 6 6.1642 -3.3259 -2.1541 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2148 2.3193 0.0005 32 1 1.5131 5.5700 0.7281 33 1 0.6266 6.2784 -1.3740 34 1 5.1388 2.5838 0.0007 35 1 5.9070 0.8507 -0.8898 36 1 5.9069 0.8506 0.8901 37 1 9.2051 -2.4547 0.2650 38 1 7.6179 -3.1165 0.7245 39 1 9.9330 -2.1488 -2.6731 40 1 8.7713 -2.6314 -3.9326 41 1 8.4578 -1.1888 -2.9385 42 1 8.1532 -5.5825 -0.9744 43 1 8.5798 -5.4036 -2.6935 44 1 9.7407 -4.9214 -1.4336 45 1 5.7450 -2.3197 -2.1533 46 1 6.0588 -3.7630 -3.1471 47 1 5.6329 -3.9415 -1.4284 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4066032_4858416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:54:56 Heat of formation + Delta-G solvation = -169.368218 kcal Electronic energy + Delta-G solvation = -32874.701538 eV Core-core repulsion = 28152.622306 eV Total energy + Delta-G solvation = -4722.079232 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 373.133 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.40383 -42.22225 -41.57719 -39.96337 -39.15332 -37.81288 -37.47595 -37.11394 -32.84541 -32.66128 -30.73533 -29.59523 -28.94162 -28.42608 -28.37160 -27.94474 -27.55302 -25.77154 -24.02929 -23.15564 -22.15552 -20.81003 -19.88055 -19.52833 -18.87834 -18.84716 -18.39950 -18.29913 -18.19035 -17.85353 -17.28833 -17.24963 -16.61520 -16.44170 -15.94637 -15.59613 -15.07642 -14.86723 -14.64148 -14.38991 -14.27227 -14.14614 -13.97803 -13.94990 -13.78720 -13.60627 -13.38802 -13.25943 -13.07419 -12.99536 -12.94567 -12.70609 -12.67150 -12.55677 -12.41442 -12.39806 -12.35548 -12.19463 -12.08152 -11.80394 -11.60624 -10.87022 -10.78829 -10.53135 -10.43914 -10.25199 -9.56716 -1.34588 -0.49269 0.16648 0.29558 0.83015 0.96488 1.00533 1.39136 1.44847 1.54939 1.78474 1.82290 1.82940 1.84768 1.87778 2.25275 2.54118 2.88699 3.12597 3.23757 3.39641 3.57883 3.72644 3.82159 3.84003 3.87955 3.98365 4.08754 4.16607 4.21928 4.22182 4.31924 4.59481 4.64676 4.68001 4.69341 4.72230 4.76070 4.79385 4.80651 4.81985 4.86227 5.19932 5.27349 5.45947 5.51805 5.59616 5.62169 5.95039 6.53155 6.58590 6.75601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.305 6.305 3 C 0.170 3.830 4 C -0.182 4.182 5 C 0.002 3.998 6 C -0.103 4.103 7 O -0.551 6.551 8 Si 0.969 3.031 9 H -0.243 1.243 10 H -0.243 1.243 11 H -0.246 1.246 12 C -0.042 4.042 13 N 0.037 4.963 14 O -0.197 6.197 15 O -0.142 6.142 16 C -0.108 4.108 17 C 0.103 3.897 18 O -0.290 6.290 19 C 0.050 3.950 20 C 0.446 3.554 21 O -0.497 6.497 22 O -0.329 6.329 23 C -0.255 4.255 24 Si 1.062 2.938 25 C -0.454 4.454 26 C -0.453 4.453 27 C -0.457 4.457 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.178 0.822 32 H 0.101 0.899 33 H 0.404 0.596 34 H 0.187 0.813 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.064 0.936 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -1.547 0.785 2.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.216 6.216 3 C 0.121 3.879 4 C -0.201 4.201 5 C 0.000 4.000 6 C -0.211 4.211 7 O -0.361 6.361 8 Si 0.788 3.212 9 H -0.167 1.167 10 H -0.166 1.166 11 H -0.170 1.170 12 C -0.127 4.127 13 N 0.552 4.448 14 O -0.403 6.403 15 O -0.363 6.363 16 C -0.128 4.128 17 C 0.056 3.944 18 O -0.203 6.203 19 C -0.025 4.025 20 C 0.288 3.712 21 O -0.385 6.385 22 O -0.245 6.245 23 C -0.372 4.372 24 Si 1.254 2.746 25 C -0.562 4.562 26 C -0.561 4.561 27 C -0.562 4.562 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.195 0.805 32 H 0.119 0.881 33 H 0.255 0.745 34 H 0.204 0.796 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.137 -3.624 0.931 4.883 hybrid contribution 0.242 1.000 0.085 1.033 sum -2.896 -2.624 1.017 4.038 Atomic orbital electron populations 1.23729 0.75112 1.07070 1.03416 1.86310 1.24413 1.24515 1.86411 1.18604 0.89221 0.86167 0.93915 1.21164 1.02031 0.88948 1.07940 1.19206 0.90595 0.96089 0.94114 1.25199 1.10850 0.93889 0.91205 1.86398 1.77327 1.45157 1.27224 0.85465 0.73100 0.82122 0.80521 1.16709 1.16649 1.16973 1.20514 0.92468 0.82449 1.17232 1.43514 1.00849 1.03126 0.97348 1.94535 0.96250 1.94022 1.55517 1.94474 1.64577 1.25068 1.52141 1.20952 1.03177 0.88130 1.00529 1.17801 0.88341 0.84974 1.03282 1.86213 1.17919 1.27142 1.89061 1.22377 0.78472 0.93005 1.08638 1.23131 0.82244 0.91638 0.74144 1.90742 1.64521 1.39250 1.43972 1.86367 1.20618 1.34090 1.83450 1.28736 1.02686 0.84483 1.21286 0.78766 0.65314 0.66898 0.63668 1.26148 1.08910 1.09498 1.11657 1.26097 1.07549 1.17427 1.05063 1.26573 1.21554 1.03531 1.04567 0.90194 0.90527 0.85477 0.80500 0.88108 0.74475 0.79571 0.84414 0.84334 0.84472 0.90523 0.90032 0.90853 0.91430 0.91215 0.90553 0.89893 0.93098 0.91718 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -0.75 10.28 -79.59 -0.82 -1.57 16 3 C 0.17 0.35 6.70 22.57 0.15 0.51 16 4 C -0.18 0.08 7.65 22.35 0.17 0.25 16 5 C 0.00 0.00 5.29 -19.86 -0.11 -0.10 16 6 C -0.10 0.06 1.73 71.24 0.12 0.19 16 7 O -0.55 -0.33 11.75 -129.49 -1.52 -1.85 16 8 Si 0.97 -4.71 25.49 68.60 1.75 -2.96 16 9 H -0.24 1.29 6.73 99.48 0.67 1.96 16 10 H -0.24 1.11 7.11 99.48 0.71 1.82 16 11 H -0.25 1.12 7.11 99.48 0.71 1.83 16 12 C -0.04 -0.20 6.85 36.38 0.25 0.05 16 13 N 0.04 0.33 4.45 -46.46 -0.21 0.12 16 14 O -0.20 -2.10 18.44 18.89 0.35 -1.75 16 15 O -0.14 -1.37 14.61 25.14 0.37 -1.00 16 16 C -0.11 -0.12 8.54 22.35 0.19 0.07 16 17 C 0.10 0.25 6.70 22.57 0.15 0.40 16 18 O -0.29 -1.15 9.46 -67.07 -0.63 -1.79 16 19 C 0.05 -0.11 5.33 71.24 0.38 0.27 16 20 C 0.45 1.28 6.82 71.24 0.49 1.77 16 21 O -0.50 -4.56 12.18 28.38 0.35 -4.22 16 22 O -0.33 -0.12 9.92 -51.37 -0.51 -0.63 16 23 C -0.25 0.58 5.40 113.37 0.61 1.19 16 24 Si 1.06 -3.83 12.12 68.60 0.83 -3.00 16 25 C -0.45 1.47 8.65 113.37 0.98 2.45 16 26 C -0.45 1.70 8.65 113.37 0.98 2.68 16 27 C -0.46 -1.61 7.10 113.37 0.81 -0.80 16 28 H 0.08 -0.75 7.66 -2.39 -0.02 -0.77 16 29 H 0.08 -0.64 7.66 -2.39 -0.02 -0.66 16 30 H 0.13 -1.12 8.14 -2.38 -0.02 -1.14 16 31 H 0.18 -0.91 3.12 -2.91 -0.01 -0.92 16 32 H 0.10 -0.08 6.09 -2.39 -0.01 -0.09 16 33 H 0.40 -3.23 8.74 -74.06 -0.65 -3.88 16 34 H 0.19 -0.67 5.85 -2.91 -0.02 -0.69 16 35 H 0.14 -1.07 7.66 -2.39 -0.02 -1.08 16 36 H 0.14 -1.09 7.66 -2.39 -0.02 -1.11 16 37 H 0.14 -0.99 7.96 -2.38 -0.02 -1.01 16 38 H 0.08 -0.04 7.52 -2.39 -0.02 -0.06 16 39 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 40 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 41 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 42 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 43 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 44 H 0.08 -0.47 7.96 -2.38 -0.02 -0.49 16 45 H 0.05 0.32 6.28 -2.39 -0.01 0.30 16 46 H 0.06 0.15 7.96 -2.38 -0.02 0.13 16 47 H 0.06 0.41 7.43 -2.39 -0.02 0.39 16 Total: 0.00 -22.72 392.38 7.34 -15.38 By element: Atomic # 1 Polarization: -7.88 SS G_CDS: 1.10 Total: -6.78 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.29 Total: 10.03 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -0.21 Total: 0.12 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -2.42 Total: -12.80 kcal Atomic # 14 Polarization: -8.53 SS G_CDS: 2.58 Total: -5.96 kcal Total: -22.72 7.34 -15.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4066032_4858416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.986 kcal (2) G-P(sol) polarization free energy of solvation -22.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds