Wall clock time and date at job start Tue Mar 9 2021 16:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86313 * 1 3 3 C 1.86301 * 109.47014 * 2 1 4 4 C 1.86293 * 109.47106 * 239.99953 * 2 1 3 5 5 C 1.86303 * 109.46815 * 119.99987 * 2 1 3 6 6 O 1.45196 * 109.47005 * 60.00010 * 5 2 1 7 7 C 1.34768 * 116.99741 * 75.00283 * 6 5 2 8 8 O 1.21536 * 120.00486 * 359.97438 * 7 6 5 9 9 C 1.47236 * 119.99740 * 179.97438 * 7 6 5 10 10 C 1.36497 * 127.20084 * 179.97438 * 9 7 6 11 11 C 1.50696 * 125.80966 * 0.03250 * 10 9 7 12 12 O 1.42908 * 109.46950 * 89.99989 * 11 10 9 13 13 C 1.35897 * 117.00027 * 179.97438 * 12 11 10 14 14 C 1.38736 * 120.05684 * 359.73231 * 13 12 11 15 15 C 1.38146 * 119.94515 * 179.74340 * 14 13 12 16 16 C 1.38268 * 120.05328 * 0.50816 * 15 14 13 17 17 C 1.50698 * 119.94630 * 179.74867 * 16 15 14 18 18 O 1.42901 * 109.46979 * 245.01899 * 17 16 15 19 19 Si 1.86306 * 109.46675 * 5.01544 * 17 16 15 20 20 H 1.48497 * 109.47169 * 60.00530 * 19 17 16 21 21 H 1.48504 * 109.46762 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47268 * 300.00032 * 19 17 16 23 23 C 1.38268 * 120.11363 * 359.76465 * 16 15 14 24 24 C 1.38152 * 120.05377 * 359.97438 * 23 16 15 25 25 O 1.33630 * 108.38305 * 179.75635 * 10 9 7 26 26 C 1.34217 * 110.92467 * 0.41342 * 25 10 9 27 27 C 1.34160 * 109.14291 * 359.58202 * 26 25 10 28 28 H 1.09000 * 109.46904 * 300.00017 * 1 2 3 29 29 H 1.09001 * 109.46646 * 60.00211 * 1 2 3 30 30 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46878 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46945 * 300.00299 * 3 2 1 33 33 H 1.08999 * 109.46832 * 59.99614 * 3 2 1 34 34 H 1.09004 * 109.47510 * 300.00216 * 4 2 1 35 35 H 1.08997 * 109.47489 * 59.99851 * 4 2 1 36 36 H 1.09003 * 109.47352 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.46919 * 299.99929 * 5 2 1 38 38 H 1.08999 * 109.46790 * 180.02562 * 5 2 1 39 39 H 1.08997 * 109.47819 * 210.00195 * 11 10 9 40 40 H 1.08998 * 109.47446 * 330.00841 * 11 10 9 41 41 H 1.08002 * 120.02495 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.97619 * 180.22628 * 15 14 13 43 43 H 1.08998 * 109.47631 * 125.01755 * 17 16 15 44 44 H 0.96705 * 114.00116 * 60.00035 * 18 17 16 45 45 H 1.07993 * 119.97505 * 179.97438 * 23 16 15 46 46 H 1.08003 * 120.02606 * 179.97438 * 24 23 16 47 47 H 1.08002 * 125.43126 * 179.85527 * 26 25 10 48 48 H 1.08000 * 127.02223 * 180.28492 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5212 6 8 2.0000 -2.2472 1.5211 7 6 2.5967 -3.1070 0.6721 8 8 3.4966 -2.7231 -0.0489 9 6 2.1583 -4.5115 0.6180 10 6 2.6549 -5.5009 -0.1805 11 6 3.7706 -5.3490 -1.1821 12 8 5.0216 -5.6187 -0.5462 13 6 6.1377 -5.5254 -1.3159 14 6 6.0306 -5.1867 -2.6570 15 6 7.1672 -5.0873 -3.4360 16 6 8.4098 -5.3353 -2.8826 17 6 9.6475 -5.2317 -3.7360 18 8 10.2553 -6.5198 -3.8521 19 14 9.1837 -4.6090 -5.4296 20 1 8.5522 -3.2705 -5.3090 21 1 10.4033 -4.5075 -6.2708 22 1 8.2260 -5.5534 -6.0591 23 6 8.5188 -5.6785 -1.5477 24 6 7.3856 -5.7740 -0.7631 25 8 1.9876 -6.6287 0.0813 26 6 1.0534 -6.4251 1.0233 27 6 1.0937 -5.1420 1.4129 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1208 -1.9059 -1.5211 35 1 2.1208 -0.3645 -2.4111 36 1 3.5741 -0.8778 -1.5213 37 1 2.1207 -0.3644 2.4111 38 1 3.5740 -0.8779 1.5214 39 1 3.6210 -6.0513 -2.0022 40 1 3.7731 -4.3309 -1.5715 41 1 5.0598 -4.9973 -3.0907 42 1 7.0847 -4.8201 -4.4791 43 1 10.3505 -4.5386 -3.2740 44 1 9.6854 -7.1887 -4.2559 45 1 9.4904 -5.8722 -1.1179 46 1 7.4712 -6.0425 0.2795 47 1 0.3799 -7.1758 1.4096 48 1 0.4718 -4.6689 2.1584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4549110_4858416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:16:14 Heat of formation + Delta-G solvation = -135.673132 kcal Electronic energy + Delta-G solvation = -30644.577482 eV Core-core repulsion = 26370.297393 eV Total energy + Delta-G solvation = -4274.280089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.81784 -41.27802 -41.12416 -39.19871 -37.37129 -37.11694 -34.24863 -32.90417 -31.96827 -31.38693 -29.78554 -28.74210 -28.49329 -28.39099 -27.52532 -26.13876 -24.68756 -23.80450 -22.60260 -22.26303 -20.90881 -19.48641 -19.27482 -18.35685 -17.96125 -17.53011 -17.31609 -16.99615 -16.96366 -16.73415 -16.38411 -16.02289 -15.69840 -15.36764 -15.03630 -14.57973 -14.49556 -14.41560 -14.33128 -14.14105 -13.98250 -13.96065 -13.83561 -13.71570 -13.46495 -13.43733 -13.30455 -13.16477 -13.09531 -12.95610 -12.54034 -12.27247 -12.19120 -12.06047 -12.03668 -11.55054 -11.48309 -11.01753 -10.94315 -10.80725 -10.40847 -10.37755 -9.99385 -9.96552 -9.17490 -0.16197 0.33099 0.35222 0.86230 1.17745 1.31378 1.43543 1.44206 1.52925 1.57493 1.79503 1.92703 1.94833 2.02530 2.41750 2.50098 2.70581 3.23066 3.51254 3.54113 3.66880 3.76838 3.80618 3.87273 3.92765 4.08153 4.18910 4.30382 4.35737 4.47559 4.50621 4.57846 4.62674 4.64077 4.65126 4.66546 4.70946 4.71525 4.73707 4.84098 4.90447 4.98303 5.10296 5.19166 5.29905 5.35376 5.40857 5.48186 5.53587 5.67709 5.72553 5.79084 6.30614 6.58042 6.78490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 0.999 3.001 3 C -0.446 4.446 4 C -0.436 4.436 5 C -0.238 4.238 6 O -0.327 6.327 7 C 0.524 3.476 8 O -0.489 6.489 9 C -0.195 4.195 10 C 0.073 3.927 11 C 0.132 3.868 12 O -0.304 6.304 13 C 0.141 3.859 14 C -0.201 4.201 15 C -0.083 4.083 16 C -0.158 4.158 17 C -0.075 4.075 18 O -0.539 6.539 19 Si 0.947 3.053 20 H -0.250 1.250 21 H -0.254 1.254 22 H -0.253 1.253 23 C -0.049 4.049 24 C -0.147 4.147 25 O -0.160 6.160 26 C -0.021 4.021 27 C -0.175 4.175 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.376 0.624 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.217 0.783 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 0.246 -0.009 3.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.195 2.805 3 C -0.554 4.554 4 C -0.544 4.544 5 C -0.357 4.357 6 O -0.243 6.243 7 C 0.369 3.631 8 O -0.378 6.378 9 C -0.198 4.198 10 C 0.020 3.980 11 C 0.057 3.943 12 O -0.217 6.217 13 C 0.096 3.904 14 C -0.220 4.220 15 C -0.101 4.101 16 C -0.158 4.158 17 C -0.186 4.186 18 O -0.344 6.344 19 Si 0.770 3.230 20 H -0.174 1.174 21 H -0.178 1.178 22 H -0.176 1.176 23 C -0.067 4.067 24 C -0.166 4.166 25 O -0.056 6.056 26 C -0.087 4.087 27 C -0.194 4.194 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.223 0.777 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.234 0.766 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.028 0.674 -0.637 3.166 hybrid contribution -0.639 -0.160 0.437 0.790 sum -3.666 0.514 -0.200 3.708 Atomic orbital electron populations 1.26062 1.20041 1.04686 1.04593 0.79706 0.67685 0.67137 0.66003 1.26038 1.06530 1.18015 1.04858 1.26238 1.07090 1.07150 1.13949 1.28394 1.05434 0.83658 1.18213 1.86483 1.58721 1.21173 1.57886 1.19892 0.80036 0.85302 0.77892 1.90850 1.28524 1.77883 1.40589 1.20278 1.03645 0.92284 1.03560 1.21928 0.94870 0.83278 0.97911 1.21157 0.78081 1.04135 0.90918 1.86093 1.12575 1.85038 1.38043 1.18951 0.86291 0.95579 0.89585 1.21158 0.99836 1.07710 0.93292 1.20827 0.91885 0.98057 0.99339 1.20201 0.94704 1.05185 0.95748 1.24889 0.95571 0.89941 1.08170 1.86516 1.43376 1.19600 1.84948 0.85728 0.80337 0.80843 0.76066 1.17391 1.17814 1.17637 1.20834 0.98125 0.95295 0.92409 1.20512 0.89362 1.05500 1.01233 1.83815 1.39979 1.33896 1.47863 1.24134 0.94171 0.98627 0.91764 1.22999 0.99899 0.93811 1.02672 0.91045 0.90976 0.91085 0.90934 0.90641 0.91028 0.91702 0.91836 0.90314 0.87129 0.89977 0.89516 0.86571 0.85099 0.85908 0.86515 0.77703 0.84643 0.84813 0.76611 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.41 8.65 101.05 0.87 1.29 16 2 Si 1.00 -1.42 12.12 -169.99 -2.06 -3.48 16 3 C -0.45 0.61 8.65 101.05 0.87 1.48 16 4 C -0.44 -0.26 7.10 101.05 0.72 0.45 16 5 C -0.24 0.01 5.40 101.05 0.55 0.56 16 6 O -0.33 -0.66 9.83 -40.68 -0.40 -1.06 16 7 C 0.52 1.55 6.73 34.39 0.23 1.78 16 8 O -0.49 -1.87 10.55 -19.29 -0.20 -2.08 16 9 C -0.19 -0.43 6.32 -103.29 -0.65 -1.08 16 10 C 0.07 0.14 7.01 -34.94 -0.24 -0.11 16 11 C 0.13 0.15 4.74 36.00 0.17 0.32 16 12 O -0.30 -0.98 10.12 -19.42 -0.20 -1.18 16 13 C 0.14 0.37 6.69 -39.22 -0.26 0.11 16 14 C -0.20 -0.27 9.04 -39.43 -0.36 -0.63 16 15 C -0.08 -0.08 8.66 -39.60 -0.34 -0.43 16 16 C -0.16 -0.15 5.35 -104.60 -0.56 -0.71 16 17 C -0.07 0.00 2.80 36.00 0.10 0.11 16 18 O -0.54 -0.31 12.83 -35.23 -0.45 -0.76 16 19 Si 0.95 -0.24 25.13 -169.99 -4.27 -4.51 16 20 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 21 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 22 H -0.25 0.06 7.04 56.52 0.40 0.46 16 23 C -0.05 -0.06 9.68 -39.60 -0.38 -0.44 16 24 C -0.15 -0.31 9.99 -39.43 -0.39 -0.70 16 25 O -0.16 -0.18 10.52 7.70 0.08 -0.10 16 26 C -0.02 0.02 12.03 29.30 0.35 0.38 16 27 C -0.17 0.01 11.05 -37.44 -0.41 -0.41 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 34 H 0.06 0.10 6.28 -51.93 -0.33 -0.23 16 35 H 0.06 0.00 7.96 -51.93 -0.41 -0.42 16 36 H 0.08 0.13 7.42 -51.93 -0.39 -0.26 16 37 H 0.11 -0.21 7.96 -51.93 -0.41 -0.63 16 38 H 0.08 0.04 7.53 -51.93 -0.39 -0.35 16 39 H 0.09 -0.09 7.65 -51.93 -0.40 -0.49 16 40 H 0.12 0.11 6.02 -51.93 -0.31 -0.20 16 41 H 0.13 -0.08 6.30 -52.49 -0.33 -0.41 16 42 H 0.12 -0.05 4.86 -52.49 -0.25 -0.31 16 43 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 44 H 0.38 -0.96 8.70 45.56 0.40 -0.56 16 45 H 0.14 0.00 8.06 -52.49 -0.42 -0.42 16 46 H 0.13 0.16 8.06 -52.48 -0.42 -0.26 16 47 H 0.22 -1.13 8.06 -52.49 -0.42 -1.55 16 48 H 0.17 -0.32 8.06 -52.49 -0.42 -0.74 16 LS Contribution 400.88 15.07 6.04 6.04 Total: 0.00 -7.24 400.88 -7.42 -14.66 By element: Atomic # 1 Polarization: -3.27 SS G_CDS: -6.21 Total: -9.48 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 0.26 Total: 1.96 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -1.17 Total: -5.18 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -6.33 Total: -8.00 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -7.24 -7.42 -14.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549110_4858416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.016 kcal (2) G-P(sol) polarization free energy of solvation -7.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds