Wall clock time and date at job start Tue Mar 9 2021 16:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86313 * 1 3 3 C 1.86301 * 109.47014 * 2 1 4 4 C 1.86293 * 109.47106 * 239.99953 * 2 1 3 5 5 C 1.86303 * 109.46815 * 119.99987 * 2 1 3 6 6 O 1.45196 * 109.47005 * 60.00010 * 5 2 1 7 7 C 1.34768 * 116.99741 * 75.00283 * 6 5 2 8 8 O 1.21536 * 120.00486 * 359.97438 * 7 6 5 9 9 C 1.47236 * 119.99740 * 179.97438 * 7 6 5 10 10 C 1.36497 * 127.20084 * 179.97438 * 9 7 6 11 11 C 1.50696 * 125.80966 * 0.03250 * 10 9 7 12 12 O 1.42908 * 109.46950 * 89.99989 * 11 10 9 13 13 C 1.35897 * 117.00027 * 179.97438 * 12 11 10 14 14 C 1.38736 * 120.05684 * 359.73231 * 13 12 11 15 15 C 1.38146 * 119.94515 * 179.74340 * 14 13 12 16 16 C 1.38268 * 120.05328 * 0.50816 * 15 14 13 17 17 C 1.50698 * 119.94630 * 179.74867 * 16 15 14 18 18 O 1.42901 * 109.46979 * 245.01899 * 17 16 15 19 19 Si 1.86306 * 109.46675 * 5.01544 * 17 16 15 20 20 H 1.48497 * 109.47169 * 60.00530 * 19 17 16 21 21 H 1.48504 * 109.46762 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47268 * 300.00032 * 19 17 16 23 23 C 1.38268 * 120.11363 * 359.76465 * 16 15 14 24 24 C 1.38152 * 120.05377 * 359.97438 * 23 16 15 25 25 O 1.33630 * 108.38305 * 179.75635 * 10 9 7 26 26 C 1.34217 * 110.92467 * 0.41342 * 25 10 9 27 27 C 1.34160 * 109.14291 * 359.58202 * 26 25 10 28 28 H 1.09000 * 109.46904 * 300.00017 * 1 2 3 29 29 H 1.09001 * 109.46646 * 60.00211 * 1 2 3 30 30 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46878 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46945 * 300.00299 * 3 2 1 33 33 H 1.08999 * 109.46832 * 59.99614 * 3 2 1 34 34 H 1.09004 * 109.47510 * 300.00216 * 4 2 1 35 35 H 1.08997 * 109.47489 * 59.99851 * 4 2 1 36 36 H 1.09003 * 109.47352 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.46919 * 299.99929 * 5 2 1 38 38 H 1.08999 * 109.46790 * 180.02562 * 5 2 1 39 39 H 1.08997 * 109.47819 * 210.00195 * 11 10 9 40 40 H 1.08998 * 109.47446 * 330.00841 * 11 10 9 41 41 H 1.08002 * 120.02495 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.97619 * 180.22628 * 15 14 13 43 43 H 1.08998 * 109.47631 * 125.01755 * 17 16 15 44 44 H 0.96705 * 114.00116 * 60.00035 * 18 17 16 45 45 H 1.07993 * 119.97505 * 179.97438 * 23 16 15 46 46 H 1.08003 * 120.02606 * 179.97438 * 24 23 16 47 47 H 1.08002 * 125.43126 * 179.85527 * 26 25 10 48 48 H 1.08000 * 127.02223 * 180.28492 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5212 6 8 2.0000 -2.2472 1.5211 7 6 2.5967 -3.1070 0.6721 8 8 3.4966 -2.7231 -0.0489 9 6 2.1583 -4.5115 0.6180 10 6 2.6549 -5.5009 -0.1805 11 6 3.7706 -5.3490 -1.1821 12 8 5.0216 -5.6187 -0.5462 13 6 6.1377 -5.5254 -1.3159 14 6 6.0306 -5.1867 -2.6570 15 6 7.1672 -5.0873 -3.4360 16 6 8.4098 -5.3353 -2.8826 17 6 9.6475 -5.2317 -3.7360 18 8 10.2553 -6.5198 -3.8521 19 14 9.1837 -4.6090 -5.4296 20 1 8.5522 -3.2705 -5.3090 21 1 10.4033 -4.5075 -6.2708 22 1 8.2260 -5.5534 -6.0591 23 6 8.5188 -5.6785 -1.5477 24 6 7.3856 -5.7740 -0.7631 25 8 1.9876 -6.6287 0.0813 26 6 1.0534 -6.4251 1.0233 27 6 1.0937 -5.1420 1.4129 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1208 -1.9059 -1.5211 35 1 2.1208 -0.3645 -2.4111 36 1 3.5741 -0.8778 -1.5213 37 1 2.1207 -0.3644 2.4111 38 1 3.5740 -0.8779 1.5214 39 1 3.6210 -6.0513 -2.0022 40 1 3.7731 -4.3309 -1.5715 41 1 5.0598 -4.9973 -3.0907 42 1 7.0847 -4.8201 -4.4791 43 1 10.3505 -4.5386 -3.2740 44 1 9.6854 -7.1887 -4.2559 45 1 9.4904 -5.8722 -1.1179 46 1 7.4712 -6.0425 0.2795 47 1 0.3799 -7.1758 1.4096 48 1 0.4718 -4.6689 2.1584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4549110_4858416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:16:13 Heat of formation + Delta-G solvation = -128.841990 kcal Electronic energy + Delta-G solvation = -30644.281261 eV Core-core repulsion = 26370.297393 eV Total energy + Delta-G solvation = -4273.983869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.83218 -41.38804 -41.25837 -39.27819 -37.50736 -37.17048 -34.29111 -32.94168 -32.03788 -31.44678 -29.74249 -28.76905 -28.41200 -28.37956 -27.54484 -26.18205 -24.76559 -23.87150 -22.62765 -22.33561 -20.97479 -19.58252 -19.31905 -18.41407 -18.05598 -17.62378 -17.38036 -17.07655 -17.02548 -16.80719 -16.41194 -16.02723 -15.74142 -15.39761 -15.06878 -14.62677 -14.53902 -14.49305 -14.34787 -14.08438 -13.95598 -13.93815 -13.80989 -13.74654 -13.52187 -13.42338 -13.25978 -13.20052 -13.07689 -12.96199 -12.59605 -12.31578 -12.23653 -12.12670 -12.08090 -11.63936 -11.58338 -11.06836 -10.87624 -10.79188 -10.42034 -10.38925 -10.08792 -9.95797 -9.28559 -0.26774 0.22529 0.25852 0.89752 1.18696 1.29345 1.44502 1.48933 1.52288 1.60499 1.82676 1.89282 1.91232 2.05412 2.35589 2.54259 2.60987 3.24393 3.53244 3.56419 3.62229 3.73289 3.78678 3.85596 3.89525 4.03407 4.20913 4.24039 4.38691 4.40759 4.50743 4.55585 4.66751 4.68846 4.73216 4.74181 4.76282 4.79097 4.79876 4.81138 4.85962 4.91685 5.10694 5.19801 5.20450 5.23746 5.44740 5.50408 5.58567 5.61311 5.65295 5.78952 6.20144 6.63243 6.72232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.057 2.943 3 C -0.451 4.451 4 C -0.453 4.453 5 C -0.258 4.258 6 O -0.331 6.331 7 C 0.518 3.482 8 O -0.506 6.506 9 C -0.215 4.215 10 C 0.058 3.942 11 C 0.130 3.870 12 O -0.322 6.322 13 C 0.124 3.876 14 C -0.206 4.206 15 C -0.090 4.090 16 C -0.159 4.159 17 C -0.073 4.073 18 O -0.553 6.553 19 Si 0.979 3.021 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.249 1.249 23 C -0.053 4.053 24 C -0.160 4.160 25 O -0.169 6.169 26 C -0.009 4.009 27 C -0.188 4.188 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.146 0.854 42 H 0.137 0.863 43 H 0.123 0.877 44 H 0.388 0.612 45 H 0.146 0.854 46 H 0.135 0.865 47 H 0.258 0.742 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 0.284 0.165 4.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.249 2.751 3 C -0.559 4.559 4 C -0.559 4.559 5 C -0.375 4.375 6 O -0.247 6.247 7 C 0.364 3.636 8 O -0.397 6.397 9 C -0.218 4.218 10 C 0.005 3.995 11 C 0.056 3.944 12 O -0.236 6.236 13 C 0.079 3.921 14 C -0.224 4.224 15 C -0.107 4.107 16 C -0.160 4.160 17 C -0.184 4.184 18 O -0.360 6.360 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.173 1.173 23 C -0.071 4.071 24 C -0.179 4.179 25 O -0.064 6.064 26 C -0.074 4.074 27 C -0.207 4.207 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.141 0.859 44 H 0.238 0.762 45 H 0.164 0.836 46 H 0.153 0.847 47 H 0.273 0.727 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.955 0.682 -0.465 4.040 hybrid contribution -0.355 -0.183 0.399 0.565 sum -4.310 0.498 -0.066 4.339 Atomic orbital electron populations 1.26136 1.20295 1.04439 1.05196 0.78835 0.66757 0.66146 0.63357 1.26075 1.06434 1.17935 1.05500 1.26485 1.06216 1.07002 1.16176 1.28788 1.05191 0.83033 1.20497 1.86467 1.58688 1.21952 1.57558 1.20129 0.79888 0.85810 0.77734 1.90834 1.29304 1.78286 1.41259 1.20527 1.04740 0.92114 1.04442 1.22037 0.95375 0.83595 0.98443 1.21237 0.77377 1.04460 0.91341 1.86054 1.13285 1.85295 1.38972 1.19153 0.86331 0.96431 0.90196 1.21376 1.00816 1.07273 0.92958 1.21044 0.91792 0.97886 1.00023 1.20371 0.95163 1.04645 0.95772 1.24936 0.95264 0.89973 1.08205 1.86485 1.44171 1.20115 1.85196 0.85280 0.79089 0.80130 0.75173 1.18427 1.19985 1.17304 1.20989 0.98294 0.95183 0.92618 1.20676 0.89678 1.05940 1.01600 1.83822 1.40424 1.33653 1.48493 1.24950 0.93211 0.99123 0.90127 1.23262 0.99881 0.94335 1.03211 0.90200 0.90616 0.91764 0.91190 0.90338 0.90049 0.92966 0.91365 0.91771 0.85059 0.90826 0.87598 0.87013 0.83636 0.84560 0.85876 0.76247 0.83628 0.84668 0.72675 0.79825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.99 8.65 113.37 0.98 1.97 16 2 Si 1.06 -2.70 12.12 68.60 0.83 -1.86 16 3 C -0.45 1.44 8.65 113.37 0.98 2.42 16 4 C -0.45 -1.26 7.10 113.37 0.80 -0.46 16 5 C -0.26 -0.13 5.40 113.37 0.61 0.49 16 6 O -0.33 -1.67 9.83 -56.79 -0.56 -2.23 16 7 C 0.52 3.95 6.73 70.19 0.47 4.43 16 8 O -0.51 -5.04 10.55 19.72 0.21 -4.83 16 9 C -0.22 -1.23 6.32 -19.00 -0.12 -1.35 16 10 C 0.06 0.30 7.01 25.28 0.18 0.47 16 11 C 0.13 0.51 4.74 71.23 0.34 0.85 16 12 O -0.32 -2.68 10.12 -92.39 -0.93 -3.61 16 13 C 0.12 0.83 6.69 22.51 0.15 0.98 16 14 C -0.21 -0.75 9.04 22.37 0.20 -0.55 16 15 C -0.09 -0.21 8.66 22.25 0.19 -0.01 16 16 C -0.16 -0.36 5.35 -19.85 -0.11 -0.46 16 17 C -0.07 0.01 2.80 71.24 0.20 0.21 16 18 O -0.55 -0.52 12.83 -148.98 -1.91 -2.43 16 19 Si 0.98 -0.54 25.13 68.60 1.72 1.18 16 20 H -0.26 -0.26 7.11 99.48 0.71 0.45 16 21 H -0.27 -0.78 7.11 99.48 0.71 -0.07 16 22 H -0.25 0.29 7.04 99.48 0.70 0.99 16 23 C -0.05 -0.17 9.68 22.26 0.22 0.04 16 24 C -0.16 -0.90 9.99 22.37 0.22 -0.67 16 25 O -0.17 -0.42 10.52 4.65 0.05 -0.37 16 26 C -0.01 0.03 12.03 66.89 0.80 0.83 16 27 C -0.19 0.01 11.05 23.65 0.26 0.27 16 28 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 30 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 31 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 32 H 0.08 -0.27 7.96 -2.38 -0.02 -0.29 16 33 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H 0.05 0.27 6.28 -2.39 -0.01 0.26 16 35 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 36 H 0.06 0.35 7.42 -2.39 -0.02 0.34 16 37 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 38 H 0.07 0.17 7.53 -2.39 -0.02 0.15 16 39 H 0.11 -0.11 7.65 -2.39 -0.02 -0.13 16 40 H 0.11 0.47 6.02 -2.39 -0.01 0.45 16 41 H 0.15 -0.06 6.30 -2.91 -0.02 -0.07 16 42 H 0.14 -0.15 4.86 -2.91 -0.01 -0.16 16 43 H 0.12 -0.21 7.96 -2.39 -0.02 -0.23 16 44 H 0.39 -2.08 8.70 -74.05 -0.64 -2.72 16 45 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 46 H 0.14 0.57 8.06 -2.91 -0.02 0.55 16 47 H 0.26 -3.26 8.06 -2.91 -0.02 -3.29 16 48 H 0.18 -0.77 8.06 -2.91 -0.02 -0.79 16 Total: 0.00 -17.80 400.88 6.89 -10.91 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: 1.09 Total: -6.23 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.39 Total: 9.47 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -3.15 Total: -13.47 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.56 Total: -0.68 kcal Total: -17.80 6.89 -10.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549110_4858416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.932 kcal (2) G-P(sol) polarization free energy of solvation -17.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds