Wall clock time and date at job start Tue Mar 9 2021 16:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47050 * 2 1 4 4 C 1.86301 * 109.46988 * 240.00414 * 2 1 3 5 5 C 1.86298 * 109.47350 * 120.00086 * 2 1 3 6 6 O 1.45201 * 109.46818 * 60.00310 * 5 2 1 7 7 C 1.34223 * 117.00249 * 74.99943 * 6 5 2 8 8 O 1.20829 * 120.00053 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99981 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.47561 * 180.02562 * 9 7 6 11 11 C 1.35894 * 117.00434 * 180.02562 * 10 9 7 12 12 C 1.38709 * 120.05744 * 359.97438 * 11 10 9 13 13 C 1.38159 * 119.94698 * 180.02562 * 12 11 10 14 14 C 1.38241 * 120.05581 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.94735 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47147 * 245.00352 * 15 14 13 17 17 Si 1.86299 * 109.46748 * 4.99994 * 15 14 13 18 18 H 1.48503 * 109.47188 * 60.00070 * 17 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47505 * 299.99883 * 17 15 14 21 21 C 1.38293 * 120.11270 * 0.27563 * 14 13 12 22 22 C 1.38126 * 120.05159 * 359.45046 * 21 14 13 23 23 N 1.48002 * 120.02520 * 180.29946 * 22 21 14 24 24 O 1.21798 * 120.00044 * 0.24677 * 23 22 21 25 25 O 1.21801 * 119.99648 * 180.25377 * 23 22 21 26 26 H 1.09000 * 109.47165 * 299.99922 * 1 2 3 27 27 H 1.09003 * 109.47620 * 59.99864 * 1 2 3 28 28 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47537 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47517 * 300.00594 * 3 2 1 31 31 H 1.09000 * 109.47073 * 60.00022 * 3 2 1 32 32 H 1.08995 * 109.47277 * 299.99906 * 4 2 1 33 33 H 1.09003 * 109.47167 * 59.99445 * 4 2 1 34 34 H 1.08995 * 109.47406 * 179.97438 * 4 2 1 35 35 H 1.08992 * 109.47006 * 299.99787 * 5 2 1 36 36 H 1.08998 * 109.46757 * 180.02562 * 5 2 1 37 37 H 1.08998 * 109.47376 * 59.99672 * 9 7 6 38 38 H 1.09005 * 109.46967 * 300.00262 * 9 7 6 39 39 H 1.08008 * 120.02343 * 359.97438 * 12 11 10 40 40 H 1.08008 * 119.97393 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.47318 * 124.99465 * 15 14 13 42 42 H 0.96695 * 114.00385 * 59.99326 * 16 15 14 43 43 H 1.08002 * 119.97160 * 179.70751 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 2.0001 -2.2472 1.5210 7 6 2.5942 -3.1036 0.6753 8 8 3.4889 -2.7218 -0.0416 9 6 2.1456 -4.5411 0.6199 10 8 2.9244 -5.2463 -0.3488 11 6 2.6446 -6.5644 -0.5244 12 6 1.6416 -7.1670 0.2205 13 6 1.3594 -8.5075 0.0404 14 6 2.0753 -9.2480 -0.8816 15 6 1.7659 -10.7101 -1.0756 16 8 2.8903 -11.4929 -0.6698 17 14 0.2834 -11.1728 -0.0466 18 1 -0.8853 -10.3593 -0.4682 19 1 -0.0221 -12.6134 -0.2381 20 1 0.5752 -10.9145 1.3864 21 6 3.0793 -8.6509 -1.6218 22 6 3.3614 -7.3097 -1.4496 23 7 4.4316 -6.6697 -2.2469 24 8 5.0608 -7.3246 -3.0585 25 8 4.6830 -5.4882 -2.0913 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5739 1.7566 -0.0005 30 1 2.1205 2.2704 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1206 -1.9057 -1.5213 33 1 2.1205 -0.3643 -2.4112 34 1 3.5739 -0.8778 -1.5215 35 1 2.1208 -0.3644 2.4110 36 1 3.5740 -0.8778 1.5212 37 1 1.0929 -4.5827 0.3403 38 1 2.2800 -5.0017 1.5987 39 1 1.0822 -6.5890 0.9413 40 1 0.5788 -8.9772 0.6205 41 1 1.5515 -10.8997 -2.1273 42 1 3.1383 -11.3743 0.2573 43 1 3.6404 -9.2327 -2.3382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4549112_4858416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:23:42 Heat of formation + Delta-G solvation = -146.822307 kcal Electronic energy + Delta-G solvation = -28217.305650 eV Core-core repulsion = 23970.423893 eV Total energy + Delta-G solvation = -4246.881757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.08098 -41.96848 -41.28780 -39.76916 -37.70611 -37.35668 -37.15200 -33.58808 -32.48661 -30.91355 -29.66700 -28.53145 -28.35628 -27.80785 -27.62426 -26.69659 -24.25340 -22.90567 -22.12116 -20.58618 -19.53410 -19.31840 -18.68153 -18.48704 -18.45193 -18.08495 -17.92590 -17.04631 -16.85087 -16.56253 -16.33098 -15.86564 -15.55650 -15.03095 -14.70907 -14.31433 -14.28089 -14.11775 -14.00266 -13.95315 -13.83291 -13.49166 -13.37041 -13.29434 -13.07392 -13.03908 -12.76492 -12.57579 -12.45342 -12.38670 -12.24663 -11.99524 -11.90461 -11.78175 -11.51329 -10.97498 -10.96326 -10.79225 -10.77268 -10.49943 -9.98414 -1.18430 -0.43510 0.33364 0.45254 0.70687 0.87158 0.99205 1.15499 1.23536 1.43810 1.67042 1.68437 1.79075 1.88116 2.11182 2.48045 2.93012 2.99073 3.15002 3.24454 3.42115 3.51970 3.52598 3.57833 3.66299 4.09534 4.10264 4.13271 4.31552 4.38295 4.55623 4.62241 4.62769 4.64554 4.67083 4.69498 4.88186 4.89363 4.96861 5.19860 5.34803 5.38511 5.45376 5.63749 5.76528 6.27592 6.61612 6.89033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 0.999 3.001 3 C -0.446 4.446 4 C -0.437 4.437 5 C -0.237 4.237 6 O -0.333 6.333 7 C 0.443 3.557 8 O -0.450 6.450 9 C 0.058 3.942 10 O -0.258 6.258 11 C 0.201 3.799 12 C -0.208 4.208 13 C -0.033 4.033 14 C -0.156 4.156 15 C -0.079 4.079 16 O -0.533 6.533 17 Si 0.947 3.053 18 H -0.246 1.246 19 H -0.245 1.245 20 H -0.248 1.248 21 C 0.012 3.988 22 C -0.073 4.073 23 N 0.029 4.971 24 O -0.174 6.174 25 O -0.120 6.120 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.158 0.842 40 H 0.144 0.856 41 H 0.126 0.874 42 H 0.378 0.622 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -1.033 5.678 9.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.195 2.805 3 C -0.555 4.555 4 C -0.546 4.546 5 C -0.355 4.355 6 O -0.250 6.250 7 C 0.282 3.718 8 O -0.334 6.334 9 C -0.018 4.018 10 O -0.169 6.169 11 C 0.151 3.849 12 C -0.227 4.227 13 C -0.051 4.051 14 C -0.157 4.157 15 C -0.189 4.189 16 O -0.339 6.339 17 Si 0.769 3.231 18 H -0.170 1.170 19 H -0.169 1.169 20 H -0.172 1.172 21 C -0.007 4.007 22 C -0.158 4.158 23 N 0.549 4.451 24 O -0.383 6.383 25 O -0.343 6.343 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.176 0.824 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.226 0.774 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.816 -1.536 5.646 9.763 hybrid contribution 0.653 0.606 0.344 0.955 sum -7.163 -0.930 5.989 9.383 Atomic orbital electron populations 1.26064 1.20035 1.04574 1.04683 0.79720 0.67586 0.67332 0.65882 1.26036 1.06624 1.17929 1.04878 1.26255 1.07386 1.07098 1.13812 1.28441 1.05637 0.82933 1.18478 1.86342 1.59134 1.21545 1.57997 1.22585 0.81944 0.88050 0.79229 1.90811 1.27009 1.77194 1.38384 1.22101 0.96817 0.88505 0.94331 1.86417 1.56654 1.17636 1.56158 1.18604 0.91630 0.83358 0.91277 1.21290 1.00509 0.96710 1.04161 1.21324 0.96405 0.93312 0.94015 1.20312 0.98287 0.98085 0.99028 1.25027 0.99110 0.86419 1.08331 1.86579 1.48874 1.65696 1.32706 0.85713 0.76259 0.82263 0.78882 1.16981 1.16860 1.17199 1.20860 0.93827 0.90042 0.95947 1.20597 0.98423 0.94315 1.02453 1.43326 1.00559 1.01234 0.99991 1.94563 1.49490 1.64158 1.30106 1.94688 1.70537 0.97893 1.71211 0.91043 0.90873 0.91216 0.90855 0.90571 0.91060 0.91677 0.91785 0.90146 0.86850 0.89754 0.86797 0.86822 0.82433 0.83843 0.85648 0.77425 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.76 8.65 101.05 0.87 1.64 16 2 Si 1.00 -1.94 12.12 -169.99 -2.06 -4.00 16 3 C -0.45 0.71 8.65 101.05 0.87 1.59 16 4 C -0.44 -0.52 7.10 101.05 0.72 0.19 16 5 C -0.24 0.32 5.40 101.05 0.55 0.86 16 6 O -0.33 0.15 9.92 -39.24 -0.39 -0.24 16 7 C 0.44 0.29 6.82 36.00 0.25 0.53 16 8 O -0.45 -1.80 12.17 -25.48 -0.31 -2.11 16 9 C 0.06 -0.13 5.33 36.00 0.19 0.06 16 10 O -0.26 -0.39 7.68 -49.77 -0.38 -0.77 16 11 C 0.20 0.05 6.67 -39.22 -0.26 -0.21 16 12 C -0.21 0.68 9.04 -39.44 -0.36 0.32 16 13 C -0.03 0.12 8.66 -39.61 -0.34 -0.23 16 14 C -0.16 0.37 5.35 -104.60 -0.56 -0.19 16 15 C -0.08 0.25 2.80 36.01 0.10 0.35 16 16 O -0.53 1.07 12.83 -35.23 -0.45 0.62 16 17 Si 0.95 -3.47 25.13 -169.99 -4.27 -7.74 16 18 H -0.25 0.83 7.11 56.52 0.40 1.23 16 19 H -0.25 0.40 7.11 56.52 0.40 0.80 16 20 H -0.25 0.99 7.04 56.52 0.40 1.39 16 21 C 0.01 0.00 9.18 -39.60 -0.36 -0.37 16 22 C -0.07 -0.16 6.87 -79.81 -0.55 -0.71 16 23 N 0.03 0.17 4.45 34.03 0.15 0.32 16 24 O -0.17 -1.14 18.45 -29.46 -0.54 -1.68 16 25 O -0.12 -0.93 17.24 -36.49 -0.63 -1.56 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.06 0.15 6.28 -51.93 -0.33 -0.18 16 33 H 0.06 0.05 7.96 -51.93 -0.41 -0.37 16 34 H 0.08 0.22 7.43 -51.93 -0.39 -0.16 16 35 H 0.11 -0.38 7.96 -51.93 -0.41 -0.79 16 36 H 0.08 -0.05 7.52 -51.93 -0.39 -0.44 16 37 H 0.11 -0.63 7.66 -51.93 -0.40 -1.03 16 38 H 0.11 -0.61 7.66 -51.93 -0.40 -1.00 16 39 H 0.16 -1.05 6.30 -52.48 -0.33 -1.38 16 40 H 0.14 -0.82 4.86 -52.48 -0.25 -1.07 16 41 H 0.13 -0.49 7.96 -51.93 -0.41 -0.90 16 42 H 0.38 -2.02 8.70 45.56 0.40 -1.62 16 43 H 0.17 -0.06 7.61 -52.49 -0.40 -0.46 16 LS Contribution 367.47 15.07 5.54 5.54 Total: 0.00 -9.76 367.47 -7.24 -17.00 By element: Atomic # 1 Polarization: -4.21 SS G_CDS: -5.01 Total: -9.22 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 1.12 Total: 3.85 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: 0.15 Total: 0.32 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: -2.71 Total: -5.75 kcal Atomic # 14 Polarization: -5.41 SS G_CDS: -6.33 Total: -11.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -9.76 -7.24 -17.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549112_4858416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.818 kcal (2) G-P(sol) polarization free energy of solvation -9.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds