Wall clock time and date at job start Tue Mar 9 2021 16:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47050 * 2 1 4 4 C 1.86301 * 109.46988 * 240.00414 * 2 1 3 5 5 C 1.86298 * 109.47350 * 120.00086 * 2 1 3 6 6 O 1.45201 * 109.46818 * 60.00310 * 5 2 1 7 7 C 1.34223 * 117.00249 * 74.99943 * 6 5 2 8 8 O 1.20829 * 120.00053 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99981 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.47561 * 180.02562 * 9 7 6 11 11 C 1.35894 * 117.00434 * 180.02562 * 10 9 7 12 12 C 1.38709 * 120.05744 * 359.97438 * 11 10 9 13 13 C 1.38159 * 119.94698 * 180.02562 * 12 11 10 14 14 C 1.38241 * 120.05581 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.94735 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47147 * 245.00352 * 15 14 13 17 17 Si 1.86299 * 109.46748 * 4.99994 * 15 14 13 18 18 H 1.48503 * 109.47188 * 60.00070 * 17 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47505 * 299.99883 * 17 15 14 21 21 C 1.38293 * 120.11270 * 0.27563 * 14 13 12 22 22 C 1.38126 * 120.05159 * 359.45046 * 21 14 13 23 23 N 1.48002 * 120.02520 * 180.29946 * 22 21 14 24 24 O 1.21798 * 120.00044 * 0.24677 * 23 22 21 25 25 O 1.21801 * 119.99648 * 180.25377 * 23 22 21 26 26 H 1.09000 * 109.47165 * 299.99922 * 1 2 3 27 27 H 1.09003 * 109.47620 * 59.99864 * 1 2 3 28 28 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47537 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47517 * 300.00594 * 3 2 1 31 31 H 1.09000 * 109.47073 * 60.00022 * 3 2 1 32 32 H 1.08995 * 109.47277 * 299.99906 * 4 2 1 33 33 H 1.09003 * 109.47167 * 59.99445 * 4 2 1 34 34 H 1.08995 * 109.47406 * 179.97438 * 4 2 1 35 35 H 1.08992 * 109.47006 * 299.99787 * 5 2 1 36 36 H 1.08998 * 109.46757 * 180.02562 * 5 2 1 37 37 H 1.08998 * 109.47376 * 59.99672 * 9 7 6 38 38 H 1.09005 * 109.46967 * 300.00262 * 9 7 6 39 39 H 1.08008 * 120.02343 * 359.97438 * 12 11 10 40 40 H 1.08008 * 119.97393 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.47318 * 124.99465 * 15 14 13 42 42 H 0.96695 * 114.00385 * 59.99326 * 16 15 14 43 43 H 1.08002 * 119.97160 * 179.70751 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 2.0001 -2.2472 1.5210 7 6 2.5942 -3.1036 0.6753 8 8 3.4889 -2.7218 -0.0416 9 6 2.1456 -4.5411 0.6199 10 8 2.9244 -5.2463 -0.3488 11 6 2.6446 -6.5644 -0.5244 12 6 1.6416 -7.1670 0.2205 13 6 1.3594 -8.5075 0.0404 14 6 2.0753 -9.2480 -0.8816 15 6 1.7659 -10.7101 -1.0756 16 8 2.8903 -11.4929 -0.6698 17 14 0.2834 -11.1728 -0.0466 18 1 -0.8853 -10.3593 -0.4682 19 1 -0.0221 -12.6134 -0.2381 20 1 0.5752 -10.9145 1.3864 21 6 3.0793 -8.6509 -1.6218 22 6 3.3614 -7.3097 -1.4496 23 7 4.4316 -6.6697 -2.2469 24 8 5.0608 -7.3246 -3.0585 25 8 4.6830 -5.4882 -2.0913 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5739 1.7566 -0.0005 30 1 2.1205 2.2704 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1206 -1.9057 -1.5213 33 1 2.1205 -0.3643 -2.4112 34 1 3.5739 -0.8778 -1.5215 35 1 2.1208 -0.3644 2.4110 36 1 3.5740 -0.8778 1.5212 37 1 1.0929 -4.5827 0.3403 38 1 2.2800 -5.0017 1.5987 39 1 1.0822 -6.5890 0.9413 40 1 0.5788 -8.9772 0.6205 41 1 1.5515 -10.8997 -2.1273 42 1 3.1383 -11.3743 0.2573 43 1 3.6404 -9.2327 -2.3382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4549112_4858416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:23:41 Heat of formation + Delta-G solvation = -143.663794 kcal Electronic energy + Delta-G solvation = -28217.168686 eV Core-core repulsion = 23970.423893 eV Total energy + Delta-G solvation = -4246.744793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.32180 -41.98267 -41.27288 -39.65444 -37.61817 -37.58825 -37.26260 -33.54183 -32.33430 -30.79095 -29.58041 -28.42135 -28.35701 -27.84726 -27.65196 -26.50193 -24.20949 -22.91679 -22.05548 -20.60974 -19.81066 -19.29426 -18.68225 -18.67003 -18.33544 -18.10273 -17.84880 -16.94131 -16.79203 -16.32843 -16.11667 -15.69720 -15.29502 -14.91574 -14.64366 -14.18554 -14.16138 -13.96549 -13.90386 -13.82880 -13.75105 -13.42513 -13.28196 -13.24494 -13.06104 -12.96474 -12.71715 -12.63853 -12.37571 -12.31619 -12.28199 -12.21706 -12.08588 -11.74246 -11.53580 -10.86955 -10.86052 -10.77405 -10.52622 -10.41845 -9.85380 -1.34132 -0.28339 0.12774 0.31091 0.83155 1.02624 1.15034 1.48133 1.55239 1.56691 1.81211 1.89774 1.98813 1.99976 2.23222 2.55657 3.08483 3.19963 3.36122 3.53292 3.63032 3.67280 3.76606 3.87319 3.88438 4.24490 4.26606 4.37087 4.55037 4.60961 4.69600 4.72781 4.75910 4.78838 4.79876 4.81174 4.84216 4.87757 5.04642 5.15520 5.24958 5.52706 5.60164 5.63756 5.66149 6.40939 6.64800 6.68366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.063 2.937 3 C -0.456 4.456 4 C -0.461 4.461 5 C -0.252 4.252 6 O -0.327 6.327 7 C 0.437 3.563 8 O -0.497 6.497 9 C 0.050 3.950 10 O -0.292 6.292 11 C 0.194 3.806 12 C -0.190 4.190 13 C -0.018 4.018 14 C -0.148 4.148 15 C -0.086 4.086 16 O -0.554 6.554 17 Si 0.985 3.015 18 H -0.242 1.242 19 H -0.280 1.280 20 H -0.231 1.231 21 C 0.003 3.997 22 C -0.100 4.100 23 N 0.034 4.966 24 O -0.197 6.197 25 O -0.174 6.174 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.140 0.860 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.203 0.797 40 H 0.177 0.823 41 H 0.126 0.874 42 H 0.392 0.608 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -1.457 8.559 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.254 2.746 3 C -0.564 4.564 4 C -0.565 4.565 5 C -0.370 4.370 6 O -0.243 6.243 7 C 0.279 3.721 8 O -0.384 6.384 9 C -0.025 4.025 10 O -0.203 6.203 11 C 0.145 3.855 12 C -0.208 4.208 13 C -0.035 4.035 14 C -0.149 4.149 15 C -0.195 4.195 16 O -0.361 6.361 17 Si 0.806 3.194 18 H -0.165 1.165 19 H -0.205 1.205 20 H -0.154 1.154 21 C -0.017 4.017 22 C -0.185 4.185 23 N 0.545 4.455 24 O -0.405 6.405 25 O -0.388 6.388 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.091 0.909 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.220 0.780 40 H 0.194 0.806 41 H 0.144 0.856 42 H 0.241 0.759 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.931 -1.901 8.517 13.987 hybrid contribution 1.580 0.612 -0.539 1.778 sum -9.352 -1.289 7.978 12.360 Atomic orbital electron populations 1.26076 1.19472 1.04903 1.05263 0.78759 0.67122 0.65796 0.62893 1.26132 1.06319 1.18448 1.05477 1.26650 1.05849 1.07084 1.16908 1.28658 1.05181 0.82956 1.20170 1.86347 1.58756 1.21755 1.57439 1.23341 0.81140 0.89371 0.78259 1.90813 1.29188 1.78158 1.40208 1.22568 0.98075 0.86301 0.95515 1.86382 1.58041 1.18434 1.57455 1.18845 0.92251 0.83104 0.91340 1.21774 0.98751 0.96952 1.03333 1.21732 0.95923 0.93075 0.92786 1.20482 0.97322 0.98544 0.98564 1.25271 0.99406 0.85632 1.09148 1.86552 1.49476 1.65990 1.34123 0.85212 0.75082 0.79913 0.79196 1.16500 1.20548 1.15382 1.20903 0.94889 0.89158 0.96700 1.20863 0.98471 0.95402 1.03793 1.43858 1.00978 1.00894 0.99768 1.94510 1.50799 1.63949 1.31284 1.94671 1.72300 0.99208 1.72577 0.89799 0.90949 0.91038 0.91506 0.90683 0.89728 0.93130 0.92024 0.92684 0.84238 0.90921 0.82901 0.83031 0.78033 0.80619 0.85577 0.75868 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.11 8.65 113.37 0.98 3.09 16 2 Si 1.06 -3.82 12.12 68.60 0.83 -2.98 16 3 C -0.46 1.43 8.65 113.37 0.98 2.41 16 4 C -0.46 -2.43 7.10 113.37 0.81 -1.62 16 5 C -0.25 0.73 5.40 113.37 0.61 1.35 16 6 O -0.33 0.55 9.92 -51.35 -0.51 0.04 16 7 C 0.44 0.75 6.82 71.23 0.49 1.23 16 8 O -0.50 -5.32 12.17 28.39 0.35 -4.98 16 9 C 0.05 -0.31 5.33 71.23 0.38 0.07 16 10 O -0.29 -1.08 7.68 -63.33 -0.49 -1.57 16 11 C 0.19 0.05 6.67 22.51 0.15 0.20 16 12 C -0.19 1.88 9.04 22.36 0.20 2.08 16 13 C -0.02 0.19 8.66 22.25 0.19 0.38 16 14 C -0.15 0.89 5.35 -19.85 -0.11 0.78 16 15 C -0.09 0.63 2.80 71.24 0.20 0.83 16 16 O -0.55 2.40 12.83 -148.98 -1.91 0.49 16 17 Si 0.98 -9.53 25.13 68.60 1.72 -7.81 16 18 H -0.24 2.46 7.11 99.48 0.71 3.16 16 19 H -0.28 1.02 7.11 99.48 0.71 1.73 16 20 H -0.23 2.82 7.04 99.48 0.70 3.52 16 21 C 0.00 0.00 9.18 22.26 0.20 0.21 16 22 C -0.10 -0.60 6.87 36.48 0.25 -0.35 16 23 N 0.03 0.52 4.45 -46.24 -0.21 0.32 16 24 O -0.20 -3.38 18.45 18.89 0.35 -3.04 16 25 O -0.17 -3.50 17.24 25.61 0.44 -3.06 16 26 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 27 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 29 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 30 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 31 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 32 H 0.05 0.39 6.28 -2.39 -0.02 0.37 16 33 H 0.06 0.26 7.96 -2.39 -0.02 0.25 16 34 H 0.05 0.54 7.43 -2.39 -0.02 0.53 16 35 H 0.14 -1.17 7.96 -2.39 -0.02 -1.19 16 36 H 0.07 -0.01 7.52 -2.39 -0.02 -0.03 16 37 H 0.15 -2.20 7.66 -2.39 -0.02 -2.22 16 38 H 0.15 -2.14 7.66 -2.38 -0.02 -2.16 16 39 H 0.20 -3.85 6.30 -2.91 -0.02 -3.87 16 40 H 0.18 -2.94 4.86 -2.91 -0.01 -2.95 16 41 H 0.13 -1.00 7.96 -2.39 -0.02 -1.02 16 42 H 0.39 -4.51 8.70 -74.06 -0.64 -5.16 16 43 H 0.16 0.27 7.61 -2.91 -0.02 0.25 16 Total: 0.00 -29.86 367.47 7.07 -22.79 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: 1.16 Total: -10.87 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 5.34 Total: 10.65 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -0.21 Total: 0.32 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.77 Total: -12.11 kcal Atomic # 14 Polarization: -13.35 SS G_CDS: 2.56 Total: -10.79 kcal Total: -29.86 7.07 -22.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549112_4858416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.872 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds