Wall clock time and date at job start Tue Mar 9 2021 17:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47025 * 2 1 4 4 C 1.50701 * 109.47238 * 240.00062 * 2 1 3 5 5 C 1.38371 * 119.84457 * 299.99803 * 4 2 1 6 6 C 1.37947 * 120.14741 * 180.02562 * 5 4 2 7 7 C 1.39631 * 119.84808 * 0.02562 * 6 5 4 8 8 C 1.47719 * 120.14976 * 179.97438 * 7 6 5 9 9 O 1.21475 * 120.00339 * 0.02562 * 8 7 6 10 10 O 1.34710 * 120.00411 * 180.02562 * 8 7 6 11 11 C 1.45199 * 117.00466 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47011 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47655 * 54.99363 * 12 11 10 14 14 C 1.52998 * 109.47106 * 174.99979 * 12 11 10 15 15 C 1.52998 * 109.47429 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46788 * 299.99799 * 15 14 12 17 17 H 1.09008 * 109.47201 * 299.99563 * 16 15 14 18 18 O 1.42903 * 109.47256 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47329 * 59.99953 * 16 15 14 20 20 C 1.52998 * 109.46901 * 299.99578 * 19 16 15 21 21 C 1.39628 * 119.70107 * 0.27615 * 7 6 5 22 22 C 1.37953 * 119.84606 * 359.44166 * 21 7 6 23 23 H 0.96702 * 114.00127 * 60.00478 * 1 2 3 24 24 H 1.09000 * 109.46870 * 120.00060 * 2 1 3 25 25 H 1.48504 * 110.00172 * 59.99960 * 3 2 1 26 26 H 1.48505 * 109.99946 * 181.31951 * 3 2 1 27 27 H 1.08000 * 119.92881 * 0.02562 * 5 4 2 28 28 H 1.08001 * 120.07517 * 179.97438 * 6 5 4 29 29 H 1.08993 * 109.47569 * 59.99547 * 11 10 8 30 30 H 1.09006 * 109.46757 * 299.99738 * 11 10 8 31 31 H 1.08997 * 109.47366 * 59.99207 * 14 12 11 32 32 H 1.09009 * 109.46785 * 299.99476 * 14 12 11 33 33 H 1.08997 * 109.47384 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.47329 * 59.99386 * 15 14 12 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 16 15 36 36 H 1.08997 * 109.47215 * 60.00152 * 19 16 15 37 37 H 1.08999 * 109.47164 * 180.02562 * 19 16 15 38 38 H 1.08997 * 109.47655 * 300.00305 * 20 19 16 39 39 H 1.09005 * 109.46908 * 179.97438 * 20 19 16 40 40 H 1.07992 * 120.07597 * 179.72528 * 21 7 6 41 41 H 1.07993 * 119.92184 * 180.25423 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5952 -2.0352 -1.4462 6 6 2.0520 -2.6917 -2.5702 7 6 2.8558 -2.0164 -3.4908 8 6 3.3492 -2.7131 -4.6964 9 8 3.0554 -3.8760 -4.8889 10 8 4.1249 -2.0590 -5.5824 11 6 4.5728 -2.8060 -6.7441 12 6 5.4362 -1.9041 -7.6285 13 1 6.2525 -1.4893 -7.0372 14 6 6.0100 -2.7235 -8.7861 15 6 6.8729 -1.8216 -9.6709 16 6 6.0160 -0.6829 -10.2277 17 1 5.1996 -1.0981 -10.8188 18 8 6.8217 0.1592 -11.0546 19 6 5.4421 0.1365 -9.0701 20 6 4.5792 -0.7654 -8.1854 21 6 3.1964 -0.6815 -3.2636 22 6 2.7279 -0.0354 -2.1384 23 1 -0.3933 0.4416 -0.7651 24 1 1.7923 -0.5138 0.8900 25 1 1.5614 2.4679 1.2085 26 1 3.5346 1.7703 -0.0321 27 1 0.9737 -2.5564 -0.7331 28 1 1.7892 -3.7258 -2.7372 29 1 3.7076 -3.1502 -7.3106 30 1 5.1597 -3.6652 -6.4194 31 1 5.1937 -3.1384 -9.3774 32 1 6.6202 -3.5350 -8.3894 33 1 7.2821 -2.4054 -10.4954 34 1 7.6892 -1.4064 -9.0799 35 1 6.3427 0.9045 -11.4421 36 1 6.2584 0.5517 -8.4791 37 1 4.8312 0.9475 -9.4667 38 1 3.7629 -1.1806 -8.7764 39 1 4.1707 -0.1817 -7.3604 40 1 3.8214 -0.1547 -3.9694 41 1 2.9871 0.9983 -1.9636 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_479212_16737258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:16:20 Heat of formation + Delta-G solvation = -155.249248 kcal Electronic energy + Delta-G solvation = -23063.062590 eV Core-core repulsion = 19487.737193 eV Total energy + Delta-G solvation = -3575.325397 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70071 -40.51298 -39.95430 -37.88545 -37.48742 -36.55409 -33.15392 -32.30239 -31.92351 -31.81602 -27.97250 -26.47965 -24.08430 -23.91324 -23.73147 -22.34473 -21.72909 -20.95717 -19.11882 -18.60013 -18.23985 -17.82522 -17.48034 -16.80166 -16.54188 -16.28166 -15.94995 -15.77563 -15.56381 -15.32815 -14.92955 -14.84411 -14.50940 -14.28675 -14.00440 -13.77802 -13.59170 -13.42379 -13.31178 -13.14013 -12.60066 -12.48394 -12.26360 -12.21496 -11.93711 -11.88920 -11.76384 -11.58958 -11.45374 -11.18421 -10.77283 -10.62695 -10.18173 -10.07402 -5.13733 -0.50368 0.19555 1.15886 1.43585 1.53266 1.54377 1.88161 2.59207 3.09775 3.28459 3.40129 3.49827 3.53710 3.63538 3.67790 3.79166 3.82246 3.98745 4.08050 4.15968 4.19552 4.26032 4.26898 4.32129 4.36447 4.37389 4.41054 4.51541 4.60904 4.70153 4.82118 4.85329 4.95928 4.97808 5.02942 5.06663 5.07016 5.15230 5.23012 5.25453 5.31763 5.41895 5.64347 6.43619 6.66885 6.71034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.074 4.074 3 Si 0.691 3.309 4 C -0.084 4.084 5 C -0.104 4.104 6 C -0.053 4.053 7 C -0.122 4.122 8 C 0.509 3.491 9 O -0.503 6.503 10 O -0.350 6.350 11 C 0.072 3.928 12 C -0.089 4.089 13 H 0.086 0.914 14 C -0.111 4.111 15 C -0.111 4.111 16 C 0.102 3.898 17 H 0.055 0.945 18 O -0.569 6.569 19 C -0.152 4.152 20 C -0.112 4.112 21 C -0.055 4.055 22 C -0.132 4.132 23 H 0.381 0.619 24 H 0.119 0.881 25 H -0.253 1.253 26 H -0.256 1.256 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.379 0.621 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.143 0.857 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 3.602 -1.655 4.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.185 4.185 3 Si 0.592 3.408 4 C -0.084 4.084 5 C -0.122 4.122 6 C -0.071 4.071 7 C -0.123 4.123 8 C 0.354 3.646 9 O -0.392 6.392 10 O -0.267 6.267 11 C -0.002 4.002 12 C -0.107 4.107 13 H 0.105 0.895 14 C -0.148 4.148 15 C -0.149 4.149 16 C 0.043 3.957 17 H 0.073 0.927 18 O -0.375 6.375 19 C -0.189 4.189 20 C -0.150 4.150 21 C -0.073 4.073 22 C -0.149 4.149 23 H 0.228 0.772 24 H 0.136 0.864 25 H -0.178 1.178 26 H -0.181 1.181 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.226 0.774 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.161 0.839 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.062 3.100 -0.599 3.158 hybrid contribution -0.356 -0.425 -0.067 0.558 sum -0.418 2.675 -0.665 2.788 Atomic orbital electron populations 1.86528 1.16699 1.81691 1.49314 1.25173 0.85559 1.10422 0.97353 0.94679 0.81052 0.77640 0.87419 1.20701 0.96427 0.95029 0.96286 1.21017 0.99849 0.93862 0.97492 1.21368 0.93300 1.00481 0.91944 1.19166 1.03599 0.95082 0.94499 1.21147 0.75745 0.84928 0.82806 1.90865 1.55355 1.17273 1.75683 1.86499 1.62143 1.44995 1.33052 1.23198 0.98761 0.94332 0.83861 1.21277 0.98044 0.95895 0.95520 0.89545 1.21478 0.99801 0.97853 0.95702 1.21436 0.98279 0.95642 0.99499 1.21852 0.92702 0.90746 0.90352 0.92700 1.86521 1.40803 1.43137 1.67039 1.22275 1.00164 0.98611 0.97899 1.21536 0.97690 0.96342 0.99390 1.21436 0.96437 0.92913 0.96557 1.21035 0.99160 1.00017 0.94691 0.77184 0.86417 1.17754 1.18073 0.84439 0.84135 0.90797 0.90784 0.91149 0.90651 0.90772 0.90915 0.77375 0.90894 0.91463 0.91672 0.90681 0.83900 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.46 12.76 -35.23 -0.45 0.01 16 2 C -0.07 0.10 2.82 36.01 0.10 0.20 16 3 Si 0.69 -1.47 29.77 -169.99 -5.06 -6.54 16 4 C -0.08 0.08 5.40 -104.53 -0.56 -0.48 16 5 C -0.10 0.02 9.59 -39.64 -0.38 -0.36 16 6 C -0.05 -0.04 9.60 -39.17 -0.38 -0.41 16 7 C -0.12 -0.13 5.87 -104.98 -0.62 -0.74 16 8 C 0.51 1.30 7.90 34.60 0.27 1.57 16 9 O -0.50 -2.64 16.14 -19.25 -0.31 -2.95 16 10 O -0.35 -0.37 9.01 -40.52 -0.37 -0.73 16 11 C 0.07 -0.01 4.85 37.16 0.18 0.17 16 12 C -0.09 0.13 2.44 -90.62 -0.22 -0.09 16 13 H 0.09 -0.10 8.14 -51.93 -0.42 -0.53 16 14 C -0.11 0.20 5.20 -26.73 -0.14 0.06 16 15 C -0.11 0.07 5.57 -26.73 -0.15 -0.08 16 16 C 0.10 -0.07 3.47 -26.73 -0.09 -0.16 16 17 H 0.06 -0.06 8.14 -51.92 -0.42 -0.49 16 18 O -0.57 -0.38 13.32 -35.23 -0.47 -0.84 16 19 C -0.15 0.25 5.55 -26.73 -0.15 0.10 16 20 C -0.11 0.19 5.10 -26.73 -0.14 0.06 16 21 C -0.06 0.04 9.62 -39.17 -0.38 -0.33 16 22 C -0.13 0.21 8.65 -39.64 -0.34 -0.13 16 23 H 0.38 -1.79 8.70 45.56 0.40 -1.40 16 24 H 0.12 -0.12 7.96 -51.93 -0.41 -0.53 16 25 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 26 H -0.26 -0.02 7.11 56.52 0.40 0.38 16 27 H 0.14 -0.13 8.06 -52.49 -0.42 -0.56 16 28 H 0.14 0.09 7.65 -52.49 -0.40 -0.31 16 29 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 32 H 0.07 -0.17 8.14 -51.92 -0.42 -0.59 16 33 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 35 H 0.38 -1.21 9.08 45.56 0.41 -0.80 16 36 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 37 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 38 H 0.06 -0.11 8.14 -51.93 -0.42 -0.54 16 39 H 0.07 -0.11 7.82 -51.93 -0.41 -0.52 16 40 H 0.14 -0.33 7.61 -52.49 -0.40 -0.73 16 41 H 0.14 -0.48 4.86 -52.49 -0.25 -0.74 16 LS Contribution 338.13 15.07 5.10 5.10 Total: 0.00 -7.32 338.13 -9.88 -17.20 By element: Atomic # 1 Polarization: -5.28 SS G_CDS: -5.34 Total: -10.62 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.99 Total: -0.63 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -1.59 Total: -4.51 kcal Atomic # 14 Polarization: -1.47 SS G_CDS: -5.06 Total: -6.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -7.32 -9.88 -17.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_16737258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.047 kcal (2) G-P(sol) polarization free energy of solvation -7.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds