Wall clock time and date at job start Tue Mar 9 2021 17:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47025 * 2 1 4 4 C 1.50701 * 109.47238 * 240.00062 * 2 1 3 5 5 C 1.38371 * 119.84457 * 299.99803 * 4 2 1 6 6 C 1.37947 * 120.14741 * 180.02562 * 5 4 2 7 7 C 1.39631 * 119.84808 * 0.02562 * 6 5 4 8 8 C 1.47719 * 120.14976 * 179.97438 * 7 6 5 9 9 O 1.21475 * 120.00339 * 0.02562 * 8 7 6 10 10 O 1.34710 * 120.00411 * 180.02562 * 8 7 6 11 11 C 1.45199 * 117.00466 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47011 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47655 * 54.99363 * 12 11 10 14 14 C 1.52998 * 109.47106 * 174.99979 * 12 11 10 15 15 C 1.52998 * 109.47429 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46788 * 299.99799 * 15 14 12 17 17 H 1.09008 * 109.47201 * 299.99563 * 16 15 14 18 18 O 1.42903 * 109.47256 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47329 * 59.99953 * 16 15 14 20 20 C 1.52998 * 109.46901 * 299.99578 * 19 16 15 21 21 C 1.39628 * 119.70107 * 0.27615 * 7 6 5 22 22 C 1.37953 * 119.84606 * 359.44166 * 21 7 6 23 23 H 0.96702 * 114.00127 * 60.00478 * 1 2 3 24 24 H 1.09000 * 109.46870 * 120.00060 * 2 1 3 25 25 H 1.48504 * 110.00172 * 59.99960 * 3 2 1 26 26 H 1.48505 * 109.99946 * 181.31951 * 3 2 1 27 27 H 1.08000 * 119.92881 * 0.02562 * 5 4 2 28 28 H 1.08001 * 120.07517 * 179.97438 * 6 5 4 29 29 H 1.08993 * 109.47569 * 59.99547 * 11 10 8 30 30 H 1.09006 * 109.46757 * 299.99738 * 11 10 8 31 31 H 1.08997 * 109.47366 * 59.99207 * 14 12 11 32 32 H 1.09009 * 109.46785 * 299.99476 * 14 12 11 33 33 H 1.08997 * 109.47384 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.47329 * 59.99386 * 15 14 12 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 16 15 36 36 H 1.08997 * 109.47215 * 60.00152 * 19 16 15 37 37 H 1.08999 * 109.47164 * 180.02562 * 19 16 15 38 38 H 1.08997 * 109.47655 * 300.00305 * 20 19 16 39 39 H 1.09005 * 109.46908 * 179.97438 * 20 19 16 40 40 H 1.07992 * 120.07597 * 179.72528 * 21 7 6 41 41 H 1.07993 * 119.92184 * 180.25423 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5952 -2.0352 -1.4462 6 6 2.0520 -2.6917 -2.5702 7 6 2.8558 -2.0164 -3.4908 8 6 3.3492 -2.7131 -4.6964 9 8 3.0554 -3.8760 -4.8889 10 8 4.1249 -2.0590 -5.5824 11 6 4.5728 -2.8060 -6.7441 12 6 5.4362 -1.9041 -7.6285 13 1 6.2525 -1.4893 -7.0372 14 6 6.0100 -2.7235 -8.7861 15 6 6.8729 -1.8216 -9.6709 16 6 6.0160 -0.6829 -10.2277 17 1 5.1996 -1.0981 -10.8188 18 8 6.8217 0.1592 -11.0546 19 6 5.4421 0.1365 -9.0701 20 6 4.5792 -0.7654 -8.1854 21 6 3.1964 -0.6815 -3.2636 22 6 2.7279 -0.0354 -2.1384 23 1 -0.3933 0.4416 -0.7651 24 1 1.7923 -0.5138 0.8900 25 1 1.5614 2.4679 1.2085 26 1 3.5346 1.7703 -0.0321 27 1 0.9737 -2.5564 -0.7331 28 1 1.7892 -3.7258 -2.7372 29 1 3.7076 -3.1502 -7.3106 30 1 5.1597 -3.6652 -6.4194 31 1 5.1937 -3.1384 -9.3774 32 1 6.6202 -3.5350 -8.3894 33 1 7.2821 -2.4054 -10.4954 34 1 7.6892 -1.4064 -9.0799 35 1 6.3427 0.9045 -11.4421 36 1 6.2584 0.5517 -8.4791 37 1 4.8312 0.9475 -9.4667 38 1 3.7629 -1.1806 -8.7764 39 1 4.1707 -0.1817 -7.3604 40 1 3.8214 -0.1547 -3.9694 41 1 2.9871 0.9983 -1.9636 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_16737258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:16:19 Heat of formation + Delta-G solvation = -152.834344 kcal Electronic energy + Delta-G solvation = -23062.957872 eV Core-core repulsion = 19487.737193 eV Total energy + Delta-G solvation = -3575.220679 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80158 -40.46205 -39.92271 -37.91442 -37.48472 -36.56121 -33.13713 -32.25501 -31.81235 -31.77414 -27.95308 -26.43694 -24.05655 -23.85250 -23.66153 -22.28493 -21.76112 -20.86330 -19.16236 -18.58653 -18.19113 -17.87876 -17.57776 -16.74431 -16.47867 -16.20060 -15.91357 -15.71741 -15.49575 -15.30679 -14.89469 -14.76154 -14.46942 -14.28293 -13.99805 -13.73753 -13.55846 -13.43226 -13.20087 -13.10285 -12.57413 -12.44339 -12.25728 -12.12081 -11.93760 -11.85586 -11.72395 -11.62093 -11.49843 -11.08790 -10.69489 -10.53803 -10.12949 -10.04579 -4.98623 -0.52307 0.25347 1.27708 1.35523 1.46985 1.65132 1.98694 2.60495 3.20875 3.36502 3.51875 3.58887 3.63365 3.72542 3.75499 3.85749 3.87793 4.04953 4.15886 4.22467 4.26801 4.32358 4.35777 4.38352 4.44151 4.48632 4.49211 4.56827 4.66926 4.81969 4.90708 4.95582 5.03274 5.07372 5.10237 5.15979 5.18492 5.18685 5.28910 5.32552 5.33613 5.45835 5.70045 6.56803 6.74944 6.87906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.080 4.080 3 Si 0.780 3.220 4 C -0.081 4.081 5 C -0.110 4.110 6 C -0.063 4.063 7 C -0.139 4.139 8 C 0.510 3.490 9 O -0.539 6.539 10 O -0.345 6.345 11 C 0.070 3.930 12 C -0.081 4.081 13 H 0.085 0.915 14 C -0.106 4.106 15 C -0.112 4.112 16 C 0.099 3.901 17 H 0.060 0.940 18 O -0.591 6.591 19 C -0.145 4.145 20 C -0.110 4.110 21 C -0.050 4.050 22 C -0.128 4.128 23 H 0.397 0.603 24 H 0.113 0.887 25 H -0.302 1.302 26 H -0.280 1.280 27 H 0.141 0.859 28 H 0.133 0.867 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.160 0.840 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 4.758 -1.849 5.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.190 4.190 3 Si 0.686 3.314 4 C -0.081 4.081 5 C -0.128 4.128 6 C -0.081 4.081 7 C -0.140 4.140 8 C 0.357 3.643 9 O -0.430 6.430 10 O -0.261 6.261 11 C -0.004 4.004 12 C -0.100 4.100 13 H 0.103 0.897 14 C -0.144 4.144 15 C -0.150 4.150 16 C 0.041 3.959 17 H 0.078 0.922 18 O -0.399 6.399 19 C -0.183 4.183 20 C -0.147 4.147 21 C -0.068 4.068 22 C -0.145 4.145 23 H 0.247 0.753 24 H 0.130 0.870 25 H -0.230 1.230 26 H -0.207 1.207 27 H 0.159 0.841 28 H 0.151 0.849 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.243 0.757 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.178 0.822 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.186 4.262 -0.827 4.346 hybrid contribution -0.330 -0.751 0.032 0.821 sum -0.515 3.511 -0.794 3.636 Atomic orbital electron populations 1.86495 1.16866 1.82176 1.50589 1.25322 0.85583 1.11165 0.96925 0.93667 0.78001 0.74745 0.84998 1.20813 0.96131 0.94712 0.96455 1.21089 1.00047 0.94372 0.97263 1.21382 0.93823 1.00392 0.92497 1.19217 1.04574 0.96019 0.94234 1.21469 0.75195 0.84557 0.83123 1.90842 1.56847 1.18769 1.76558 1.86499 1.61659 1.44834 1.33137 1.23303 0.98857 0.94587 0.83635 1.21219 0.97724 0.95756 0.95268 0.89683 1.21444 0.99836 0.97686 0.95432 1.21442 0.98317 0.95868 0.99339 1.21923 0.92637 0.90731 0.90640 0.92168 1.86481 1.41982 1.44032 1.67431 1.22202 0.99968 0.98695 0.97401 1.21520 0.97640 0.96152 0.99408 1.21634 0.96061 0.92072 0.96994 1.21268 0.98331 1.00964 0.93966 0.75262 0.86976 1.22979 1.20673 0.84092 0.84913 0.90914 0.91142 0.90628 0.90263 0.91370 0.91709 0.75696 0.91623 0.90432 0.91381 0.90613 0.82204 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.31 12.76 -148.98 -1.90 -0.60 16 2 C -0.08 0.27 2.82 71.24 0.20 0.47 16 3 Si 0.78 -4.03 29.77 68.60 2.04 -1.99 16 4 C -0.08 0.21 5.40 -19.80 -0.11 0.10 16 5 C -0.11 0.02 9.59 22.23 0.21 0.23 16 6 C -0.06 -0.15 9.60 22.54 0.22 0.07 16 7 C -0.14 -0.34 5.87 -20.10 -0.12 -0.46 16 8 C 0.51 3.06 7.90 70.33 0.56 3.61 16 9 O -0.54 -6.53 16.14 19.92 0.32 -6.20 16 10 O -0.35 -0.80 9.01 -56.20 -0.51 -1.31 16 11 C 0.07 0.01 4.85 71.98 0.35 0.36 16 12 C -0.08 0.25 2.44 -10.79 -0.03 0.22 16 13 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 14 C -0.11 0.38 5.20 30.59 0.16 0.54 16 15 C -0.11 0.12 5.57 30.59 0.17 0.29 16 16 C 0.10 -0.15 3.47 30.59 0.11 -0.05 16 17 H 0.06 -0.16 8.14 -2.38 -0.02 -0.18 16 18 O -0.59 -0.74 13.32 -148.98 -1.98 -2.72 16 19 C -0.14 0.55 5.55 30.59 0.17 0.72 16 20 C -0.11 0.43 5.10 30.60 0.16 0.59 16 21 C -0.05 0.13 9.62 22.54 0.22 0.34 16 22 C -0.13 0.59 8.65 22.23 0.19 0.78 16 23 H 0.40 -4.17 8.70 -74.06 -0.64 -4.81 16 24 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 25 H -0.30 -0.95 7.11 99.48 0.71 -0.24 16 26 H -0.28 0.28 7.11 99.48 0.71 0.99 16 27 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 28 H 0.13 0.44 7.65 -2.91 -0.02 0.41 16 29 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.07 0.06 8.14 -2.38 -0.02 0.05 16 31 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 33 H 0.07 0.00 8.14 -2.39 -0.02 -0.01 16 34 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.39 -2.62 9.08 -74.06 -0.67 -3.29 16 36 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.07 -0.29 8.14 -2.39 -0.02 -0.30 16 39 H 0.08 -0.28 7.82 -2.38 -0.02 -0.30 16 40 H 0.16 -1.00 7.61 -2.91 -0.02 -1.02 16 41 H 0.16 -1.50 4.86 -2.91 -0.01 -1.51 16 Total: 0.00 -17.44 338.13 0.19 -17.25 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: -0.24 Total: -12.26 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 2.45 Total: 7.82 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -4.07 Total: -10.83 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.04 Total: -1.99 kcal Total: -17.44 0.19 -17.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_16737258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.581 kcal (2) G-P(sol) polarization free energy of solvation -17.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds