Wall clock time and date at job start Tue Mar 9 2021 17:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99460 * 2 1 4 4 C 1.53003 * 112.90833 * 294.07816 * 3 2 1 5 5 F 1.39901 * 109.47141 * 195.62894 * 4 3 2 6 6 F 1.39896 * 109.47430 * 315.63244 * 4 3 2 7 7 F 1.39896 * 109.46768 * 75.63279 * 4 3 2 8 8 C 1.54055 * 113.60762 * 162.82441 * 3 2 1 9 9 C 1.53778 * 86.98601 * 270.88395 * 8 3 2 10 10 H 1.09001 * 113.61489 * 219.97905 * 9 8 3 11 11 C 1.53000 * 113.61185 * 89.16329 * 9 8 3 12 12 O 1.45196 * 109.47269 * 85.86470 * 11 9 8 13 13 C 1.34706 * 117.00131 * 179.97438 * 12 11 9 14 14 O 1.21474 * 120.00359 * 0.02562 * 13 12 11 15 15 C 1.47733 * 120.00070 * 180.02562 * 13 12 11 16 16 C 1.39624 * 120.15057 * 180.02562 * 15 13 12 17 17 C 1.37939 * 119.84991 * 179.97438 * 16 15 13 18 18 C 1.38369 * 120.14957 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.84948 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46938 * 64.99739 * 19 18 17 21 21 Si 1.86300 * 109.46974 * 184.99653 * 19 18 17 22 22 C 1.38372 * 120.30179 * 0.24457 * 18 17 16 23 23 C 1.37947 * 120.14642 * 359.49631 * 22 18 17 24 24 C 1.53782 * 87.17444 * 334.57166 * 9 8 3 25 25 H 1.09005 * 109.46899 * 302.95881 * 1 2 3 26 26 H 1.08996 * 109.47530 * 62.96261 * 1 2 3 27 27 H 1.08999 * 109.47078 * 182.96630 * 1 2 3 28 28 H 1.09000 * 113.61001 * 156.37562 * 8 3 2 29 29 H 1.09003 * 113.69489 * 25.40589 * 8 3 2 30 30 H 1.08994 * 109.47140 * 325.85976 * 11 9 8 31 31 H 1.09001 * 109.46758 * 205.86206 * 11 9 8 32 32 H 1.08004 * 120.07716 * 359.97438 * 16 15 13 33 33 H 1.08000 * 119.92669 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.47072 * 304.99975 * 19 18 17 35 35 H 0.96703 * 114.00333 * 60.00055 * 20 19 18 36 36 H 1.48497 * 110.00112 * 58.68219 * 21 19 18 37 37 H 1.48503 * 109.99999 * 180.02562 * 21 19 18 38 38 H 1.08001 * 119.92155 * 179.74547 * 22 18 17 39 39 H 1.08006 * 120.07236 * 180.27400 * 23 22 18 40 40 H 1.08997 * 113.61717 * 140.02093 * 24 9 8 41 41 H 1.09001 * 113.61389 * 270.92979 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7271 2.0835 -1.2867 5 9 2.5973 3.1755 -1.3725 6 9 1.9200 1.2456 -2.3903 7 9 0.4050 2.5406 -1.2738 8 6 3.4932 1.3207 0.4169 9 6 3.0005 1.4808 1.8648 10 1 3.5976 2.1761 2.4548 11 6 2.7583 0.1503 2.5803 12 8 4.0020 -0.3182 3.1651 13 6 3.9607 -1.4854 3.8363 14 8 2.9145 -2.0954 3.9302 15 6 5.1879 -2.0236 4.4583 16 6 5.1488 -3.2334 5.1543 17 6 6.2984 -3.7305 5.7322 18 6 7.4884 -3.0328 5.6239 19 6 8.7402 -3.5818 6.2584 20 8 9.1013 -4.8068 5.6172 21 14 10.1245 -2.3497 6.0682 22 6 7.5331 -1.8305 4.9403 23 6 6.3920 -1.3247 4.3531 24 6 1.7235 2.1075 1.2805 25 1 -0.3633 0.5591 0.8623 26 1 -0.3634 0.4671 -0.9153 27 1 -0.3633 -1.0263 0.0532 28 1 4.0425 2.1854 0.0444 29 1 4.0096 0.3786 0.2329 30 1 2.3933 -0.5861 1.8644 31 1 2.0171 0.2906 3.3671 32 1 4.2205 -3.7788 5.2400 33 1 6.2696 -4.6663 6.2705 34 1 8.5601 -3.7655 7.3176 35 1 9.2766 -4.7184 4.6703 36 1 9.7484 -1.0611 6.7032 37 1 11.3650 -2.8795 6.6894 38 1 8.4643 -1.2891 4.8631 39 1 6.4292 -0.3883 3.8161 40 1 0.8122 1.8000 1.7933 41 1 1.7899 3.1868 1.1437 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_17321610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:20:53 Heat of formation + Delta-G solvation = -241.894542 kcal Electronic energy + Delta-G solvation = -30789.100568 eV Core-core repulsion = 25801.656022 eV Total energy + Delta-G solvation = -4987.444546 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.25044 -48.78144 -48.72455 -41.92569 -41.21711 -40.20854 -37.89489 -37.47782 -36.88940 -33.08132 -32.18905 -30.71904 -28.33356 -27.93969 -26.95878 -26.75126 -24.03762 -23.82821 -23.24464 -21.79032 -20.67075 -19.81339 -19.54418 -19.26210 -19.06548 -18.54095 -17.84357 -17.56888 -17.16687 -16.70572 -16.50168 -16.24969 -16.03496 -15.69499 -15.66516 -15.65022 -15.59807 -15.25867 -15.13080 -14.93813 -14.87118 -14.77212 -14.71222 -14.30870 -14.22033 -13.87179 -13.66717 -13.43014 -13.27518 -13.14258 -12.78198 -12.43239 -12.36322 -12.23140 -12.03825 -11.87861 -11.70957 -11.69815 -11.55389 -10.80850 -10.49153 -10.10980 -10.05057 -4.96990 -0.50084 0.27646 1.30188 1.36735 1.43729 1.53666 1.67405 2.00546 2.08437 2.56770 2.62324 2.63355 2.88372 3.23390 3.30515 3.42237 3.48851 3.59045 3.62589 3.75636 3.88803 3.90385 4.20713 4.22629 4.23819 4.26200 4.35205 4.38324 4.45584 4.47069 4.52376 4.62105 4.68807 4.69812 4.77428 4.84190 4.92794 4.97907 5.11030 5.21532 5.31200 5.35421 5.70214 5.72219 6.58726 6.76191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.030 3.970 4 C 0.434 3.566 5 F -0.174 7.174 6 F -0.188 7.188 7 F -0.186 7.186 8 C -0.110 4.110 9 C -0.091 4.091 10 H 0.127 0.873 11 C 0.075 3.925 12 O -0.343 6.343 13 C 0.511 3.489 14 O -0.538 6.538 15 C -0.139 4.139 16 C -0.064 4.064 17 C -0.111 4.111 18 C -0.082 4.082 19 C -0.081 4.081 20 O -0.554 6.554 21 Si 0.780 3.220 22 C -0.126 4.126 23 C -0.049 4.049 24 C -0.136 4.136 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.397 0.603 36 H -0.280 1.280 37 H -0.303 1.303 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.101 0.899 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 3.556 0.070 4.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.266 6.266 3 C -0.013 4.013 4 C 0.379 3.621 5 F -0.155 7.155 6 F -0.170 7.170 7 F -0.167 7.167 8 C -0.147 4.147 9 C -0.109 4.109 10 H 0.145 0.855 11 C 0.002 3.998 12 O -0.259 6.259 13 C 0.357 3.643 14 O -0.429 6.429 15 C -0.140 4.140 16 C -0.082 4.082 17 C -0.129 4.129 18 C -0.082 4.082 19 C -0.191 4.191 20 O -0.362 6.362 21 Si 0.686 3.314 22 C -0.143 4.143 23 C -0.067 4.067 24 C -0.173 4.173 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.150 0.850 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.247 0.753 36 H -0.206 1.206 37 H -0.231 1.231 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.119 0.881 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.183 3.530 1.028 4.863 hybrid contribution -1.420 -0.288 -0.081 1.451 sum 1.764 3.242 0.947 3.810 Atomic orbital electron populations 1.23253 0.78857 1.05090 1.01786 1.88081 1.21987 1.22723 1.93839 1.24341 1.01014 0.86167 0.89751 1.21488 0.74127 0.78744 0.87735 1.93174 1.69511 1.56198 1.96640 1.93187 1.94796 1.71511 1.57501 1.93179 1.36798 1.89867 1.96859 1.23404 0.90176 1.06068 0.95037 1.22040 0.98092 0.95417 0.95327 0.85533 1.23116 0.83289 0.96091 0.97316 1.86460 1.38848 1.36851 1.63783 1.21449 0.88754 0.78761 0.75316 1.90844 1.33458 1.59864 1.58734 1.19216 0.91948 0.98112 1.04724 1.21370 0.99498 0.93578 0.93743 1.21092 0.91219 1.00693 0.99905 1.20816 0.96018 0.94861 0.96555 1.25335 0.99996 0.94845 0.98882 1.86500 1.90613 1.30438 1.28628 0.93694 0.73870 0.74179 0.89704 1.21271 0.99402 0.95551 0.98075 1.21671 0.90118 0.99499 0.95388 1.23654 0.99746 1.01723 0.92149 0.91268 0.93410 0.87387 0.85012 0.88954 0.90289 0.90583 0.85001 0.84244 0.87098 0.75268 1.20625 1.23083 0.82132 0.81829 0.88052 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.33 113.37 1.17 1.16 16 2 O -0.35 -0.56 8.35 -148.98 -1.24 -1.80 16 3 C 0.03 -0.05 0.84 -10.17 -0.01 -0.05 16 4 C 0.43 0.75 2.52 71.98 0.18 0.94 16 5 F -0.17 -0.16 15.81 44.97 0.71 0.55 16 6 F -0.19 -1.15 17.11 44.97 0.77 -0.38 16 7 F -0.19 -0.48 15.33 44.97 0.69 0.21 16 8 C -0.11 0.50 6.92 31.21 0.22 0.71 16 9 C -0.09 0.53 4.20 -10.27 -0.04 0.49 16 10 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 11 C 0.08 -0.04 5.07 71.98 0.36 0.33 16 12 O -0.34 -0.51 9.47 -56.15 -0.53 -1.04 16 13 C 0.51 2.87 7.90 70.33 0.56 3.43 16 14 O -0.54 -6.40 16.14 19.92 0.32 -6.08 16 15 C -0.14 -0.29 5.87 -20.10 -0.12 -0.41 16 16 C -0.06 -0.15 9.60 22.53 0.22 0.07 16 17 C -0.11 0.02 9.66 22.23 0.21 0.23 16 18 C -0.08 0.23 5.36 -19.80 -0.11 0.12 16 19 C -0.08 0.28 2.80 71.24 0.20 0.48 16 20 O -0.55 1.20 12.83 -148.98 -1.91 -0.71 16 21 Si 0.78 -4.15 29.79 68.60 2.04 -2.10 16 22 C -0.13 0.66 8.65 22.23 0.19 0.85 16 23 C -0.05 0.16 9.62 22.54 0.22 0.38 16 24 C -0.14 0.86 6.52 31.12 0.20 1.06 16 25 H 0.07 -0.33 6.60 -2.38 -0.02 -0.35 16 26 H 0.05 -0.02 6.56 -2.39 -0.02 -0.04 16 27 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.13 -0.98 7.03 -2.39 -0.02 -1.00 16 29 H 0.09 -0.26 8.10 -2.39 -0.02 -0.28 16 30 H 0.08 0.22 6.08 -2.39 -0.01 0.21 16 31 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.13 0.44 7.65 -2.91 -0.02 0.42 16 33 H 0.14 -0.18 8.06 -2.91 -0.02 -0.21 16 34 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.40 -4.10 8.70 -74.06 -0.64 -4.75 16 36 H -0.28 0.32 7.11 99.48 0.71 1.03 16 37 H -0.30 -0.95 7.11 99.48 0.71 -0.24 16 38 H 0.16 -1.71 4.88 -2.91 -0.01 -1.73 16 39 H 0.16 -1.24 7.61 -2.91 -0.02 -1.26 16 40 H 0.10 -0.74 6.64 -2.39 -0.02 -0.75 16 41 H 0.13 -1.18 8.03 -2.39 -0.02 -1.20 16 Total: 0.00 -18.41 353.24 4.80 -13.61 By element: Atomic # 1 Polarization: -12.52 SS G_CDS: 0.49 Total: -12.03 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 3.46 Total: 9.77 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -3.37 Total: -9.63 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 2.17 Total: 0.38 kcal Atomic # 14 Polarization: -4.15 SS G_CDS: 2.04 Total: -2.10 kcal Total: -18.41 4.80 -13.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_17321610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.284 kcal (2) G-P(sol) polarization free energy of solvation -18.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds