Wall clock time and date at job start Tue Mar 9 2021 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46914 * 2 1 4 4 C 1.52998 * 109.47191 * 240.00012 * 2 1 3 5 5 O 1.42898 * 109.47047 * 119.99803 * 2 1 3 6 6 C 1.42902 * 114.00236 * 60.00118 * 5 2 1 7 7 H 1.09000 * 112.84679 * 18.80041 * 6 5 2 8 8 C 1.53777 * 113.61325 * 149.99771 * 6 5 2 9 9 C 1.53783 * 87.07958 * 140.06750 * 8 6 5 10 10 H 1.09001 * 113.61456 * 89.19907 * 9 8 6 11 11 C 1.52998 * 113.61480 * 220.01632 * 9 8 6 12 12 O 1.45202 * 109.47577 * 184.99596 * 11 9 8 13 13 C 1.34224 * 117.00628 * 179.97438 * 12 11 9 14 14 O 1.20830 * 119.99728 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00279 * 180.02562 * 13 12 11 16 16 F 1.39898 * 109.46923 * 60.00241 * 15 13 12 17 17 F 1.39900 * 109.47291 * 300.00354 * 15 13 12 18 18 O 1.42901 * 109.47075 * 179.97438 * 15 13 12 19 19 C 1.35897 * 117.00049 * 180.02562 * 18 15 13 20 20 C 1.38707 * 120.05728 * 180.02562 * 19 18 15 21 21 C 1.38172 * 119.94457 * 180.02562 * 20 19 18 22 22 C 1.50696 * 119.97101 * 179.97438 * 21 20 19 23 23 O 1.42898 * 109.46949 * 64.98112 * 22 21 20 24 24 Si 1.86300 * 109.47178 * 184.97899 * 22 21 20 25 25 C 1.38241 * 120.05236 * 359.97438 * 21 20 19 26 26 C 1.38288 * 120.11556 * 359.97438 * 25 21 20 27 27 C 1.38119 * 120.05366 * 0.28328 * 26 25 21 28 28 C 1.53777 * 113.69124 * 247.53593 * 6 5 2 29 29 H 1.09000 * 109.46761 * 300.00124 * 1 2 3 30 30 H 1.08992 * 109.47258 * 60.00218 * 1 2 3 31 31 H 1.09001 * 109.47183 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47088 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47118 * 299.99628 * 3 2 1 34 34 H 1.09000 * 109.47508 * 60.00334 * 3 2 1 35 35 H 1.09001 * 109.46714 * 299.99867 * 4 2 1 36 36 H 1.08997 * 109.47245 * 59.99269 * 4 2 1 37 37 H 1.09000 * 109.47127 * 179.97438 * 4 2 1 38 38 H 1.09001 * 113.61759 * 25.51800 * 8 6 5 39 39 H 1.09005 * 113.68956 * 254.62243 * 8 6 5 40 40 H 1.09009 * 109.46969 * 64.99948 * 11 9 8 41 41 H 1.08999 * 109.47287 * 305.00289 * 11 9 8 42 42 H 1.07998 * 120.02676 * 0.04220 * 20 19 18 43 43 H 1.09000 * 109.47732 * 304.98426 * 22 21 20 44 44 H 0.96700 * 114.00504 * 60.00043 * 23 22 21 45 45 H 1.48502 * 109.99699 * 58.68387 * 24 22 21 46 46 H 1.48498 * 110.00216 * 180.02562 * 24 22 21 47 47 H 1.08006 * 119.93966 * 180.02562 * 25 21 20 48 48 H 1.08002 * 119.96980 * 179.97438 * 26 25 21 49 49 H 1.07998 * 120.02956 * 179.72220 * 27 26 25 50 50 H 1.09002 * 113.61760 * 105.45496 * 28 6 5 51 51 H 1.09004 * 113.61416 * 334.55068 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2646 7 1 1.2523 -2.4451 0.3108 8 6 2.5838 -2.9377 2.0079 9 6 1.3667 -3.6133 2.6616 10 1 0.9756 -4.4553 2.0904 11 6 1.5702 -3.9429 4.1417 12 8 0.4207 -4.6796 4.6361 13 6 0.4419 -5.0479 5.9266 14 8 1.3895 -4.7637 6.6205 15 6 -0.7160 -5.8158 6.5102 16 9 -0.8727 -7.0210 5.8174 17 9 -1.8850 -5.0561 6.3948 18 8 -0.4594 -6.0896 7.8891 19 6 -1.4120 -6.7807 8.5686 20 6 -1.2285 -7.0805 9.9104 21 6 -2.1983 -7.7838 10.5988 22 6 -1.9993 -8.1104 12.0564 23 8 -1.9730 -6.9005 12.8163 24 14 -3.4007 -9.1854 12.6489 25 6 -3.3510 -8.1880 9.9515 26 6 -3.5368 -7.8894 8.6141 27 6 -2.5680 -7.1913 7.9202 28 6 0.6069 -2.2980 2.4220 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 3.2162 -2.3998 2.7142 39 1 3.1497 -3.5986 1.3512 40 1 1.6799 -3.0180 4.7081 41 1 2.4683 -4.5493 4.2589 42 1 -0.3284 -6.7643 10.4166 43 1 -1.0555 -8.6404 12.1846 44 1 -2.7827 -6.3762 12.7494 45 1 -3.4586 -10.4329 11.8454 46 1 -3.2166 -9.5141 14.0853 47 1 -4.1081 -8.7373 10.4916 48 1 -4.4381 -8.2067 8.1107 49 1 -2.7115 -6.9622 6.8746 50 1 -0.4240 -2.4419 2.0986 51 1 0.6989 -1.5852 3.2415 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_5054142_14598394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:11:27 Heat of formation + Delta-G solvation = -227.828773 kcal Electronic energy + Delta-G solvation = -36095.180556 eV Core-core repulsion = 30792.504874 eV Total energy + Delta-G solvation = -5302.675682 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.167 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -51.03972 -49.03616 -42.18119 -41.44124 -40.86298 -39.45573 -38.71685 -37.79109 -37.35447 -33.93385 -32.65144 -31.99322 -30.52887 -28.78683 -28.34996 -28.19140 -27.03205 -26.66323 -24.35916 -23.95295 -23.37209 -22.44034 -20.96578 -20.84018 -20.47171 -19.95741 -19.77326 -18.88448 -18.20148 -17.85416 -17.72090 -17.51847 -17.42157 -16.69715 -16.39068 -16.32659 -16.11761 -15.96714 -15.87742 -15.60068 -15.47884 -15.30369 -15.25086 -14.94432 -14.88910 -14.64205 -14.48109 -14.39355 -14.14768 -14.12124 -13.50717 -13.35676 -13.28554 -13.16520 -13.04514 -13.03334 -12.84971 -12.81272 -12.66353 -12.58080 -12.46388 -12.17211 -12.06616 -11.99296 -11.81054 -11.72046 -11.40004 -11.21966 -10.53593 -10.37406 -10.11045 -9.71658 -4.98385 -0.14101 -0.05441 0.07254 0.17324 1.26281 1.48113 1.66640 1.77873 1.99068 2.43122 2.52731 2.77503 2.99007 3.36850 3.41055 3.47214 3.54357 3.58697 3.71614 3.72905 3.89379 3.90746 3.95472 4.00759 4.01568 4.07568 4.08235 4.11707 4.14455 4.35627 4.39368 4.44771 4.62648 4.63240 4.70536 4.75393 4.75601 4.78721 4.79947 4.84739 4.91537 4.93948 4.94068 4.99994 5.09598 5.13776 5.15585 5.24163 5.28965 5.30056 5.33451 5.37276 5.77935 5.80080 6.41225 6.74174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 C -0.140 4.140 4 C -0.177 4.177 5 O -0.381 6.381 6 C 0.059 3.941 7 H 0.105 0.895 8 C -0.122 4.122 9 C -0.104 4.104 10 H 0.121 0.879 11 C 0.073 3.927 12 O -0.326 6.326 13 C 0.467 3.533 14 O -0.459 6.459 15 C 0.471 3.529 16 F -0.162 7.162 17 F -0.161 7.161 18 O -0.304 6.304 19 C 0.077 3.923 20 C -0.116 4.116 21 C -0.086 4.086 22 C -0.082 4.082 23 O -0.555 6.555 24 Si 0.792 3.208 25 C -0.130 4.130 26 C -0.069 4.069 27 C -0.195 4.195 28 C -0.152 4.152 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.107 0.893 44 H 0.397 0.603 45 H -0.280 1.280 46 H -0.300 1.300 47 H 0.162 0.838 48 H 0.169 0.831 49 H 0.139 0.861 50 H 0.079 0.921 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -0.034 -4.927 7.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.234 4.234 5 O -0.301 6.301 6 C 0.001 3.999 7 H 0.123 0.877 8 C -0.160 4.160 9 C -0.122 4.122 10 H 0.139 0.861 11 C 0.000 4.000 12 O -0.241 6.241 13 C 0.303 3.697 14 O -0.343 6.343 15 C 0.395 3.605 16 F -0.143 7.143 17 F -0.142 7.142 18 O -0.222 6.222 19 C 0.035 3.965 20 C -0.135 4.135 21 C -0.086 4.086 22 C -0.191 4.191 23 O -0.364 6.364 24 Si 0.696 3.304 25 C -0.147 4.147 26 C -0.086 4.086 27 C -0.213 4.213 28 C -0.190 4.190 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.149 0.851 43 H 0.125 0.875 44 H 0.247 0.753 45 H -0.206 1.206 46 H -0.228 1.228 47 H 0.179 0.821 48 H 0.186 0.814 49 H 0.156 0.844 50 H 0.098 0.902 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.283 -0.722 -4.095 5.969 hybrid contribution 0.728 0.081 -0.455 0.862 sum -3.555 -0.641 -4.550 5.810 Atomic orbital electron populations 1.22445 0.94934 1.02796 1.02948 1.21673 0.93698 0.93317 0.85352 1.21799 1.01666 0.93376 1.02907 1.22449 1.01937 1.01206 0.97819 1.88017 1.74207 1.24116 1.43743 1.23664 0.95662 0.82423 0.98106 0.87730 1.23229 0.96095 0.97234 0.99434 1.22394 0.99208 0.98530 0.92054 0.86075 1.23669 0.85204 0.95848 0.95230 1.86512 1.47515 1.66861 1.23248 1.22107 0.85982 0.78765 0.82801 1.90823 1.33118 1.49424 1.60930 1.20381 0.81285 0.78093 0.80709 1.93225 1.95508 1.46167 1.79418 1.93229 1.49785 1.75673 1.95538 1.86590 1.44561 1.71602 1.19487 1.19159 0.88850 0.95903 0.92549 1.20346 1.01502 1.01415 0.90230 1.20334 0.94086 0.97477 0.96750 1.25406 1.11475 0.94313 0.87881 1.86493 1.45250 1.35187 1.69428 0.93585 0.83096 0.77832 0.75857 1.21372 0.97037 1.00951 0.95385 1.21335 0.98830 0.94581 0.93903 1.21791 0.94374 1.03546 1.01637 1.23659 0.99632 0.96120 0.99557 0.92514 0.90642 0.91864 0.92320 0.89784 0.92489 0.91616 0.90499 0.92195 0.89242 0.88841 0.89880 0.89057 0.85136 0.87522 0.75303 1.20618 1.22775 0.82090 0.81399 0.84384 0.90208 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.37 8.38 71.98 0.60 0.97 16 2 C 0.10 -0.05 1.11 -10.79 -0.01 -0.06 16 3 C -0.14 0.10 8.84 71.98 0.64 0.74 16 4 C -0.18 0.49 8.38 71.98 0.60 1.09 16 5 O -0.38 -1.01 10.00 -148.98 -1.49 -2.49 16 6 C 0.06 -0.11 2.81 31.12 0.09 -0.02 16 7 H 0.11 -0.45 5.54 -2.39 -0.01 -0.46 16 8 C -0.12 0.43 7.47 31.12 0.23 0.66 16 9 C -0.10 0.38 4.02 -10.27 -0.04 0.33 16 10 H 0.12 -0.69 8.14 -2.39 -0.02 -0.70 16 11 C 0.07 -0.04 5.30 71.98 0.38 0.34 16 12 O -0.33 -0.96 10.22 -51.36 -0.52 -1.49 16 13 C 0.47 3.09 7.47 71.24 0.53 3.62 16 14 O -0.46 -5.13 16.25 28.38 0.46 -4.67 16 15 C 0.47 2.88 2.16 71.24 0.15 3.03 16 16 F -0.16 -0.79 15.27 44.97 0.69 -0.10 16 17 F -0.16 -0.78 15.31 44.97 0.69 -0.09 16 18 O -0.30 -2.77 9.60 -73.31 -0.70 -3.48 16 19 C 0.08 0.51 6.48 22.51 0.15 0.66 16 20 C -0.12 -0.62 9.62 22.37 0.22 -0.40 16 21 C -0.09 -0.06 5.35 -19.88 -0.11 -0.17 16 22 C -0.08 0.04 2.80 71.23 0.20 0.24 16 23 O -0.56 -0.44 12.83 -148.98 -1.91 -2.35 16 24 Si 0.79 -2.94 29.80 68.60 2.04 -0.90 16 25 C -0.13 0.39 8.67 22.28 0.19 0.59 16 26 C -0.07 0.16 10.04 22.25 0.22 0.39 16 27 C -0.20 -0.52 8.26 22.37 0.18 -0.33 16 28 C -0.15 0.30 7.47 31.12 0.23 0.53 16 29 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.06 -0.19 7.02 -2.39 -0.02 -0.21 16 32 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.06 -0.27 6.24 -2.39 -0.01 -0.28 16 36 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.09 -0.17 8.10 -2.39 -0.02 -0.19 16 39 H 0.09 -0.54 8.14 -2.38 -0.02 -0.56 16 40 H 0.08 0.00 7.84 -2.38 -0.02 -0.02 16 41 H 0.09 -0.16 8.13 -2.39 -0.02 -0.18 16 42 H 0.13 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.11 0.12 7.96 -2.39 -0.02 0.10 16 44 H 0.40 -3.06 8.70 -74.06 -0.64 -3.70 16 45 H -0.28 -0.09 7.11 99.48 0.71 0.61 16 46 H -0.30 -1.25 7.11 99.48 0.71 -0.54 16 47 H 0.16 -1.44 4.90 -2.91 -0.01 -1.46 16 48 H 0.17 -1.45 8.06 -2.91 -0.02 -1.47 16 49 H 0.14 0.23 5.10 -2.91 -0.01 0.21 16 50 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 51 H 0.08 0.03 7.90 -2.38 -0.02 0.01 16 Total: 0.00 -16.84 423.12 4.08 -12.77 By element: Atomic # 1 Polarization: -9.75 SS G_CDS: 0.36 Total: -9.39 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 4.47 Total: 12.20 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -4.17 Total: -14.49 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 1.38 Total: -0.19 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.04 Total: -0.90 kcal Total: -16.84 4.08 -12.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_5054142_14598394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.061 kcal (2) G-P(sol) polarization free energy of solvation -16.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds