Wall clock time and date at job start Tue Mar 9 2021 18:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47432 * 2 1 4 4 C 1.50701 * 109.46850 * 119.99871 * 2 1 3 5 5 C 1.38243 * 119.94144 * 245.01900 * 4 2 1 6 6 C 1.38180 * 120.07131 * 179.74318 * 5 4 2 7 7 C 1.38684 * 119.95582 * 0.53537 * 6 5 4 8 8 O 1.35919 * 120.05821 * 179.71841 * 7 6 5 9 9 C 1.42896 * 117.00111 * 359.72694 * 8 7 6 10 10 C 1.50703 * 109.46776 * 179.97438 * 9 8 7 11 11 O 1.20825 * 120.00247 * 0.02562 * 10 9 8 12 12 O 1.34229 * 119.99563 * 179.97438 * 10 9 8 13 13 C 1.45202 * 116.99732 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47114 * 179.97438 * 13 12 10 15 15 H 1.09005 * 112.85079 * 316.19725 * 14 13 12 16 16 C 1.54052 * 113.61963 * 87.50804 * 14 13 12 17 17 C 1.53781 * 86.98687 * 139.97823 * 16 14 13 18 18 H 1.09002 * 113.61445 * 89.16393 * 17 16 14 19 19 O 1.42905 * 113.61505 * 219.98264 * 17 16 14 20 20 C 1.53783 * 113.61545 * 185.00528 * 14 13 12 21 21 C 1.38830 * 119.87804 * 359.44448 * 7 6 5 22 22 Br 1.89096 * 120.03577 * 180.29769 * 21 7 6 23 23 C 1.38197 * 119.92937 * 0.27957 * 21 7 6 24 24 H 0.96707 * 113.99277 * 60.00109 * 1 2 3 25 25 H 1.09004 * 109.47510 * 239.99630 * 2 1 3 26 26 H 1.48509 * 110.00040 * 298.67948 * 3 2 1 27 27 H 1.48499 * 110.00119 * 59.99523 * 3 2 1 28 28 H 1.08001 * 119.96319 * 0.02562 * 5 4 2 29 29 H 1.08007 * 120.02588 * 180.25271 * 6 5 4 30 30 H 1.09004 * 109.46962 * 60.00378 * 9 8 7 31 31 H 1.08996 * 109.47097 * 299.99802 * 9 8 7 32 32 H 1.09006 * 109.46657 * 60.00409 * 13 12 10 33 33 H 1.08999 * 109.47306 * 300.00275 * 13 12 10 34 34 H 1.08999 * 113.60931 * 25.47201 * 16 14 13 35 35 H 1.08998 * 113.69722 * 254.49284 * 16 14 13 36 36 H 0.96699 * 113.99826 * 279.13770 * 19 17 16 37 37 H 1.08992 * 113.61796 * 105.46955 * 20 14 13 38 38 H 1.09000 * 113.61157 * 334.56375 * 20 14 13 39 39 H 1.08000 * 119.97562 * 179.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.6382 -0.0110 2.1908 6 6 3.0954 -0.6585 3.3226 7 6 2.8543 -2.0139 3.4900 8 8 3.3080 -2.6542 4.5998 9 6 4.0315 -1.8704 5.5507 10 6 4.4510 -2.7431 6.7055 11 8 4.1607 -3.9159 6.7131 12 8 5.1481 -2.2175 7.7251 13 6 5.5180 -3.1168 8.8035 14 6 6.3020 -2.3438 9.8659 15 1 7.0482 -1.6744 9.4378 16 6 5.4084 -1.6760 10.9283 17 6 6.4624 -2.1005 11.9645 18 1 7.2521 -1.3636 12.1111 19 8 5.9017 -2.5652 13.1941 20 6 6.8475 -3.2319 10.9966 21 6 2.1438 -2.7144 2.5246 22 35 1.8053 -4.5608 2.7523 23 6 1.6838 -2.0607 1.3972 24 1 -0.3932 0.4417 -0.7651 25 1 1.7924 -0.5139 -0.8900 26 1 1.5880 2.4586 -1.2243 27 1 1.5615 2.4679 1.2084 28 1 2.8294 1.0437 2.0584 29 1 3.6441 -0.1104 4.0743 30 1 3.3950 -1.0649 5.9170 31 1 4.9159 -1.4469 5.0748 32 1 6.1381 -3.9216 8.4088 33 1 4.6174 -3.5377 9.2506 34 1 4.4444 -2.1675 11.0595 35 1 5.3214 -0.5958 10.8114 36 1 5.6360 -1.8577 13.7973 37 1 7.9215 -3.4069 10.9348 38 1 6.2763 -4.1480 11.1465 39 1 1.1314 -2.6049 0.6456 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6201216_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:17:36 Heat of formation + Delta-G solvation = -133.800720 kcal Electronic energy + Delta-G solvation = -24609.713858 eV Core-core repulsion = 20532.355963 eV Total energy + Delta-G solvation = -4077.357895 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.034 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98115 -41.27945 -40.24440 -39.26239 -37.71959 -37.35377 -35.99602 -33.68827 -32.13237 -31.02918 -30.30099 -28.99805 -26.75773 -26.36559 -24.34989 -23.45766 -22.46038 -21.98542 -20.58233 -19.75900 -18.72837 -18.57330 -18.48839 -18.11989 -17.95563 -16.94105 -16.84604 -16.76990 -16.34564 -15.77886 -15.65129 -15.40813 -15.12610 -14.66370 -14.56698 -14.25821 -13.97451 -13.89220 -13.71314 -13.51376 -13.48908 -12.84740 -12.61912 -12.44117 -12.36990 -12.20130 -12.17853 -11.88490 -11.82380 -11.72625 -11.57825 -11.24134 -11.22215 -10.75023 -10.49030 -9.98498 -9.37089 -4.89630 -0.08421 0.09150 0.59546 0.89567 0.95879 1.32636 1.64039 1.98240 2.27083 2.34169 3.16290 3.33964 3.37050 3.45090 3.55314 3.62098 3.70582 3.84630 3.86692 3.94286 3.96487 3.98922 4.08422 4.14880 4.19057 4.26320 4.36605 4.48856 4.62338 4.65631 4.74347 4.78614 4.81636 4.96563 4.97026 5.09639 5.19642 5.23652 5.39211 5.43918 5.97412 6.53664 6.59353 6.87924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.088 4.088 3 Si 0.774 3.226 4 C -0.112 4.112 5 C -0.057 4.057 6 C -0.187 4.187 7 C 0.149 3.851 8 O -0.308 6.308 9 C 0.062 3.938 10 C 0.463 3.537 11 O -0.527 6.527 12 O -0.343 6.343 13 C 0.077 3.923 14 C -0.100 4.100 15 H 0.125 0.875 16 C -0.163 4.163 17 C 0.074 3.926 18 H 0.105 0.895 19 O -0.585 6.585 20 C -0.127 4.127 21 C -0.142 4.142 22 Br -0.051 7.051 23 C -0.035 4.035 24 H 0.395 0.605 25 H 0.095 0.905 26 H -0.291 1.291 27 H -0.288 1.288 28 H 0.162 0.838 29 H 0.182 0.818 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.396 0.604 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 9.048 -0.904 10.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.196 4.196 3 Si 0.678 3.322 4 C -0.113 4.113 5 C -0.075 4.075 6 C -0.206 4.206 7 C 0.102 3.898 8 O -0.222 6.222 9 C -0.013 4.013 10 C 0.306 3.694 11 O -0.415 6.415 12 O -0.260 6.260 13 C 0.004 3.996 14 C -0.119 4.119 15 H 0.143 0.857 16 C -0.201 4.201 17 C 0.016 3.984 18 H 0.123 0.877 19 O -0.393 6.393 20 C -0.164 4.164 21 C -0.222 4.222 22 Br 0.034 6.966 23 C -0.055 4.055 24 H 0.246 0.754 25 H 0.112 0.888 26 H -0.218 1.218 27 H -0.215 1.215 28 H 0.179 0.821 29 H 0.199 0.801 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.271 7.707 -0.428 9.347 hybrid contribution -1.530 0.149 -0.267 1.561 sum 3.740 7.856 -0.694 8.728 Atomic orbital electron populations 1.86557 1.18618 1.80798 1.51068 1.25080 0.84083 1.12375 0.98019 0.94153 0.89903 0.71339 0.76781 1.19430 1.01296 0.93077 0.97479 1.21250 0.94068 1.00687 0.91504 1.21563 1.05982 0.91529 1.01521 1.18685 0.93702 0.91671 0.85746 1.86158 1.68889 1.37964 1.29158 1.22333 1.00676 0.91916 0.86393 1.23463 0.75047 0.87286 0.83579 1.90760 1.52631 1.19467 1.78625 1.86422 1.66149 1.43526 1.29872 1.23231 0.99382 0.91887 0.85097 1.22412 0.98809 0.98797 0.91840 0.85743 1.23809 0.98382 1.02154 0.95732 1.23429 0.95617 0.96822 0.82552 0.87739 1.86489 1.83396 1.39094 1.30337 1.23113 1.02559 0.97836 0.92937 1.21250 1.09548 0.92081 0.99314 1.96758 1.94982 1.07153 1.97706 1.20900 0.95503 0.94436 0.94633 0.75395 0.88761 1.21834 1.21501 0.82087 0.80057 0.84035 0.83352 0.90832 0.91729 0.90446 0.89396 0.75420 0.88942 0.90223 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.41 12.81 -148.98 -1.91 -2.32 16 2 C -0.09 0.25 2.79 71.24 0.20 0.45 16 3 Si 0.77 -4.36 29.85 68.60 2.05 -2.31 16 4 C -0.11 0.00 5.38 -19.85 -0.11 -0.11 16 5 C -0.06 0.22 8.66 22.26 0.19 0.41 16 6 C -0.19 0.81 9.04 22.36 0.20 1.01 16 7 C 0.15 0.40 6.68 22.52 0.15 0.55 16 8 O -0.31 -1.39 9.01 -73.56 -0.66 -2.06 16 9 C 0.06 -0.25 5.33 71.24 0.38 0.13 16 10 C 0.46 1.55 8.03 71.24 0.57 2.12 16 11 O -0.53 -6.85 16.25 28.40 0.46 -6.39 16 12 O -0.34 -0.10 10.22 -51.41 -0.53 -0.63 16 13 C 0.08 0.04 5.30 71.98 0.38 0.42 16 14 C -0.10 0.38 4.03 -10.17 -0.04 0.34 16 15 H 0.12 -0.84 8.14 -2.38 -0.02 -0.86 16 16 C -0.16 0.57 7.48 31.21 0.23 0.80 16 17 C 0.07 -0.23 5.20 31.12 0.16 -0.06 16 18 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 19 O -0.58 -0.41 13.67 -148.98 -2.04 -2.45 16 20 C -0.13 0.29 7.47 31.12 0.23 0.52 16 21 C -0.14 -0.86 6.24 22.40 0.14 -0.72 16 22 Br -0.05 -0.48 33.16 -20.37 -0.68 -1.15 16 23 C -0.03 -0.13 9.42 22.27 0.21 0.08 16 24 H 0.40 -2.81 8.74 -74.05 -0.65 -3.46 16 25 H 0.09 -0.59 7.96 -2.39 -0.02 -0.61 16 26 H -0.29 0.12 7.11 99.48 0.71 0.83 16 27 H -0.29 -0.04 7.05 99.48 0.70 0.66 16 28 H 0.16 -1.45 4.86 -2.91 -0.01 -1.47 16 29 H 0.18 -2.30 6.30 -2.91 -0.02 -2.32 16 30 H 0.14 -1.48 7.65 -2.38 -0.02 -1.50 16 31 H 0.15 -1.72 7.67 -2.39 -0.02 -1.74 16 32 H 0.07 0.09 8.13 -2.38 -0.02 0.07 16 33 H 0.06 0.19 7.84 -2.39 -0.02 0.17 16 34 H 0.08 -0.03 7.90 -2.39 -0.02 -0.05 16 35 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.40 -2.97 9.12 -74.06 -0.68 -3.65 16 37 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.08 0.07 8.10 -2.39 -0.02 0.05 16 39 H 0.14 0.44 8.06 -2.91 -0.02 0.41 16 Total: 0.00 -25.97 355.08 -0.57 -26.54 By element: Atomic # 1 Polarization: -15.00 SS G_CDS: -0.18 Total: -15.18 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 2.91 Total: 5.94 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -4.67 Total: -13.83 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.05 Total: -2.31 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.68 Total: -1.15 kcal Total: -25.97 -0.57 -26.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6201216_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.259 kcal (2) G-P(sol) polarization free energy of solvation -25.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds