Wall clock time and date at job start Tue Mar 9 2021 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86305 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47137 * 119.99978 * 2 1 3 5 5 C 1.38232 * 119.94706 * 65.00205 * 4 2 1 6 6 C 1.38180 * 120.07681 * 179.97438 * 5 4 2 7 7 C 1.38678 * 119.95411 * 0.02562 * 6 5 4 8 8 O 1.35915 * 120.05567 * 179.97438 * 7 6 5 9 9 C 1.42894 * 117.00619 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47564 * 179.97438 * 9 8 7 11 11 O 1.20827 * 119.99605 * 0.02562 * 10 9 8 12 12 O 1.34226 * 120.00213 * 179.97438 * 10 9 8 13 13 C 1.45199 * 117.00116 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47011 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.47655 * 54.99363 * 14 13 12 16 16 C 1.52998 * 109.47106 * 174.99979 * 14 13 12 17 17 C 1.52998 * 109.47429 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46788 * 299.99799 * 17 16 14 19 19 H 1.09008 * 109.47201 * 299.99563 * 18 17 16 20 20 O 1.42903 * 109.47256 * 180.02562 * 18 17 16 21 21 C 1.53001 * 109.47329 * 59.99953 * 18 17 16 22 22 C 1.52998 * 109.46901 * 299.99578 * 21 18 17 23 23 C 1.38834 * 119.88159 * 0.24877 * 7 6 5 24 24 Br 1.89095 * 120.03368 * 179.73031 * 23 7 6 25 25 C 1.38192 * 119.92597 * 359.49578 * 23 7 6 26 26 H 0.96692 * 114.00025 * 299.99842 * 1 2 3 27 27 H 1.08996 * 109.47780 * 240.00017 * 2 1 3 28 28 H 1.48496 * 109.99938 * 299.99819 * 3 2 1 29 29 H 1.48499 * 110.00147 * 61.31694 * 3 2 1 30 30 H 1.08007 * 119.95954 * 359.97438 * 5 4 2 31 31 H 1.08006 * 120.02383 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47186 * 59.99746 * 9 8 7 33 33 H 1.09003 * 109.46771 * 300.00289 * 9 8 7 34 34 H 1.08993 * 109.47569 * 59.99726 * 13 12 10 35 35 H 1.09006 * 109.46757 * 299.99918 * 13 12 10 36 36 H 1.08997 * 109.47366 * 59.99207 * 16 14 13 37 37 H 1.09009 * 109.46785 * 299.99476 * 16 14 13 38 38 H 1.08997 * 109.47384 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47329 * 59.99386 * 17 16 14 40 40 H 0.96700 * 114.00311 * 180.02562 * 20 18 17 41 41 H 1.08997 * 109.47215 * 60.00152 * 21 18 17 42 42 H 1.08999 * 109.47164 * 180.02562 * 21 18 17 43 43 H 1.08997 * 109.47655 * 300.00305 * 22 21 18 44 44 H 1.09005 * 109.46908 * 179.97438 * 22 21 18 45 45 H 1.07998 * 119.97786 * 180.22609 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6841 -2.0602 1.3972 6 6 2.1440 -2.7143 2.5242 7 6 2.8538 -2.0157 3.4891 8 8 3.3065 -2.6569 4.5987 9 6 3.0148 -4.0516 4.7065 10 6 3.5918 -4.5878 5.9913 11 8 4.1911 -3.8510 6.7382 12 8 3.4392 -5.8836 6.3063 13 6 4.0207 -6.3303 7.5595 14 6 3.7471 -7.8241 7.7450 15 1 4.1135 -8.3712 6.8764 16 6 4.4646 -8.3219 9.0012 17 6 4.1905 -9.8156 9.1871 18 6 2.6848 -10.0431 9.3358 19 1 2.3186 -9.4957 10.2044 20 8 2.4287 -11.4382 9.5099 21 6 1.9672 -9.5453 8.0795 22 6 2.2414 -8.0516 7.8938 23 6 3.0961 -0.6588 3.3225 24 35 4.0569 0.2997 4.6393 25 6 2.6385 -0.0106 2.1911 26 1 -0.3933 0.4416 0.7650 27 1 1.7924 -0.5138 -0.8899 28 1 1.5614 2.4679 -1.2085 29 1 1.5878 2.4586 1.2242 30 1 1.1309 -2.6041 0.6458 31 1 1.9500 -3.7689 2.6538 32 1 3.4553 -4.5814 3.8618 33 1 1.9346 -4.1981 4.7039 34 1 3.5766 -5.7740 8.3849 35 1 5.0969 -6.1577 7.5426 36 1 4.0982 -7.7748 9.8698 37 1 5.5373 -8.1595 8.8954 38 1 4.7020 -10.1704 10.0818 39 1 4.5566 -10.3631 8.3185 40 1 1.4921 -11.6567 9.6105 41 1 2.3333 -10.0928 7.2110 42 1 0.8945 -9.7070 8.1856 43 1 1.8753 -7.5042 8.7623 44 1 1.7305 -7.6971 6.9985 45 1 2.8297 1.0440 2.0589 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6201216_16737258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:17:57 Heat of formation + Delta-G solvation = -175.699311 kcal Electronic energy + Delta-G solvation = -28582.564267 eV Core-core repulsion = 24192.314274 eV Total energy + Delta-G solvation = -4390.249993 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.065 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.97811 -41.28364 -40.08638 -39.35625 -37.86695 -37.33278 -36.58388 -33.54968 -32.33224 -32.01905 -31.82612 -30.64116 -29.81977 -26.78364 -26.23671 -24.21178 -23.79835 -22.72906 -22.29554 -21.93954 -20.87065 -19.72232 -18.76012 -18.24345 -18.18440 -18.12849 -17.99863 -16.90285 -16.86216 -16.46468 -16.35320 -16.17359 -15.65971 -15.51732 -15.33523 -15.03703 -14.82064 -14.50780 -14.37984 -14.24822 -14.03208 -13.79219 -13.60945 -13.40813 -13.21578 -13.11006 -12.59487 -12.45509 -12.37407 -12.30284 -12.13917 -11.95664 -11.88633 -11.75957 -11.70531 -11.62492 -11.49077 -11.22341 -11.10242 -10.71038 -10.63605 -10.01774 -9.37065 -4.95177 -0.04913 0.05380 0.60576 0.90842 0.96862 1.28138 1.55810 1.92565 2.28376 2.37260 3.18546 3.33768 3.41460 3.50195 3.61488 3.68910 3.72609 3.75597 3.80896 3.94167 3.99292 4.03818 4.06794 4.14794 4.25377 4.31295 4.34406 4.35269 4.47215 4.47901 4.48539 4.56394 4.66732 4.77615 4.80490 4.94826 5.01848 5.04562 5.07407 5.14814 5.17136 5.23875 5.29312 5.31607 5.43279 5.44483 5.97416 6.47692 6.55030 6.86057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.063 4.063 3 Si 0.737 3.263 4 C -0.145 4.145 5 C -0.032 4.032 6 C -0.193 4.193 7 C 0.151 3.849 8 O -0.307 6.307 9 C 0.062 3.938 10 C 0.465 3.535 11 O -0.524 6.524 12 O -0.344 6.344 13 C 0.071 3.929 14 C -0.081 4.081 15 H 0.087 0.913 16 C -0.107 4.107 17 C -0.112 4.112 18 C 0.099 3.901 19 H 0.059 0.941 20 O -0.591 6.591 21 C -0.146 4.146 22 C -0.110 4.110 23 C -0.137 4.137 24 Br -0.049 7.049 25 C -0.056 4.056 26 H 0.386 0.614 27 H 0.138 0.862 28 H -0.297 1.297 29 H -0.286 1.286 30 H 0.158 0.842 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.393 0.607 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -4.075 -2.851 5.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.173 4.173 3 Si 0.643 3.357 4 C -0.147 4.147 5 C -0.050 4.050 6 C -0.212 4.212 7 C 0.104 3.896 8 O -0.220 6.220 9 C -0.013 4.013 10 C 0.307 3.693 11 O -0.412 6.412 12 O -0.261 6.261 13 C -0.002 4.002 14 C -0.100 4.100 15 H 0.106 0.894 16 C -0.144 4.144 17 C -0.150 4.150 18 C 0.040 3.960 19 H 0.077 0.923 20 O -0.399 6.399 21 C -0.183 4.183 22 C -0.148 4.148 23 C -0.217 4.217 24 Br 0.036 6.964 25 C -0.076 4.076 26 H 0.236 0.764 27 H 0.155 0.845 28 H -0.225 1.225 29 H -0.213 1.213 30 H 0.175 0.825 31 H 0.191 0.809 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.243 0.757 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.011 -2.958 -2.509 4.009 hybrid contribution -1.681 -0.069 0.654 1.805 sum -2.692 -3.028 -1.855 4.456 Atomic orbital electron populations 1.86585 1.18132 1.80133 1.50271 1.24912 0.83493 1.10367 0.98523 0.94295 0.90924 0.73763 0.76685 1.20234 1.01730 0.95465 0.97267 1.21234 0.94344 0.93089 0.96343 1.21631 1.02433 1.02423 0.94749 1.18709 0.93957 0.90443 0.86539 1.86154 1.73760 1.22862 1.39270 1.22287 1.04233 0.80383 0.94359 1.23378 0.77211 0.80828 0.87850 1.90758 1.39436 1.59157 1.51875 1.86410 1.71982 1.25763 1.41963 1.23309 0.98552 0.95816 0.82551 1.21226 0.97169 0.91831 0.99744 0.89438 1.21448 1.01191 0.94775 0.97035 1.21444 0.94578 0.96228 1.02729 1.21929 0.95933 0.81390 0.96720 0.92260 1.86482 1.32460 1.25085 1.95897 1.22206 1.01103 0.96433 0.98591 1.21529 0.94720 0.95666 1.02871 1.21115 1.09321 0.92899 0.98394 1.96780 1.73338 1.73395 1.52859 1.20968 0.95470 1.00182 0.90949 0.76419 0.84456 1.22502 1.21256 0.82482 0.80907 0.83960 0.84118 0.91000 0.90936 0.90744 0.90144 0.91401 0.91592 0.75725 0.91547 0.90554 0.91448 0.90535 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.60 12.83 -148.98 -1.91 -1.31 16 2 C -0.06 0.24 2.80 71.24 0.20 0.44 16 3 Si 0.74 -1.72 29.88 68.60 2.05 0.33 16 4 C -0.15 0.47 5.35 -19.85 -0.11 0.37 16 5 C -0.03 0.17 9.68 22.25 0.22 0.39 16 6 C -0.19 1.08 9.04 22.36 0.20 1.29 16 7 C 0.15 0.10 6.68 22.52 0.15 0.25 16 8 O -0.31 -0.88 9.01 -73.52 -0.66 -1.54 16 9 C 0.06 -0.31 5.33 71.24 0.38 0.07 16 10 C 0.46 0.88 8.03 71.24 0.57 1.46 16 11 O -0.52 -5.80 16.25 28.39 0.46 -5.34 16 12 O -0.34 0.34 9.76 -51.38 -0.50 -0.16 16 13 C 0.07 -0.11 4.84 71.98 0.35 0.24 16 14 C -0.08 0.34 2.44 -10.79 -0.03 0.31 16 15 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 16 C -0.11 0.46 5.20 30.59 0.16 0.62 16 17 C -0.11 0.17 5.57 30.59 0.17 0.34 16 18 C 0.10 -0.18 3.47 30.59 0.11 -0.07 16 19 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 20 O -0.59 -0.64 13.32 -148.98 -1.98 -2.63 16 21 C -0.15 0.61 5.55 30.59 0.17 0.78 16 22 C -0.11 0.52 5.10 30.60 0.16 0.68 16 23 C -0.14 -0.43 6.24 22.40 0.14 -0.29 16 24 Br -0.05 -0.33 33.16 -20.37 -0.68 -1.00 16 25 C -0.06 0.02 8.40 22.27 0.19 0.21 16 26 H 0.39 -2.27 8.70 -74.06 -0.64 -2.91 16 27 H 0.14 -0.93 7.96 -2.39 -0.02 -0.95 16 28 H -0.30 -1.53 7.11 99.48 0.71 -0.83 16 29 H -0.29 -0.68 7.00 99.48 0.70 0.01 16 30 H 0.16 -1.40 8.06 -2.91 -0.02 -1.43 16 31 H 0.17 -2.18 6.30 -2.91 -0.02 -2.19 16 32 H 0.14 -1.63 7.66 -2.39 -0.02 -1.65 16 33 H 0.14 -1.59 7.66 -2.39 -0.02 -1.61 16 34 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 35 H 0.07 -0.05 8.13 -2.38 -0.02 -0.07 16 36 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 38 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.39 -2.64 9.08 -74.06 -0.67 -3.31 16 41 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.08 -0.37 7.82 -2.38 -0.02 -0.39 16 45 H 0.15 -0.26 4.83 -2.91 -0.01 -0.27 16 Total: 0.00 -22.21 389.66 -0.46 -22.67 By element: Atomic # 1 Polarization: -17.83 SS G_CDS: -0.26 Total: -18.08 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 3.02 Total: 7.07 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -4.60 Total: -10.98 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.05 Total: 0.33 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -0.68 Total: -1.00 kcal Total: -22.21 -0.46 -22.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6201216_16737258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.032 kcal (2) G-P(sol) polarization free energy of solvation -22.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds