Wall clock time and date at job start Tue Mar 9 2021 12:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47191 * 2 1 4 4 C 1.86299 * 109.47206 * 240.00205 * 2 1 3 5 5 C 1.86301 * 109.47343 * 120.00038 * 2 1 3 6 6 O 1.45199 * 109.47013 * 179.97438 * 5 2 1 7 7 C 1.34796 * 117.00026 * 75.00185 * 6 5 2 8 8 O 1.21567 * 120.00103 * 359.97438 * 7 6 5 9 9 C 1.47033 * 120.00060 * 179.97438 * 7 6 5 10 10 C 1.36097 * 123.47734 * 0.03024 * 9 7 6 11 11 S 1.70443 * 110.80947 * 179.97438 * 10 9 7 12 12 C 1.75499 * 92.45646 * 0.02562 * 11 10 9 13 13 C 1.50694 * 124.70001 * 179.97438 * 12 11 10 14 14 O 1.42908 * 109.47053 * 120.02422 * 13 12 11 15 15 Si 1.86299 * 109.47326 * 0.02562 * 13 12 11 16 16 H 1.48498 * 109.47092 * 60.00119 * 15 13 12 17 17 H 1.48504 * 109.46929 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46912 * 299.99850 * 15 13 12 19 19 C 1.32747 * 110.59438 * 359.71149 * 12 11 10 20 20 H 1.09001 * 109.47207 * 300.00047 * 1 2 3 21 21 H 1.08996 * 109.47670 * 59.99752 * 1 2 3 22 22 H 1.09002 * 109.47039 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47484 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.46936 * 300.00163 * 3 2 1 25 25 H 1.09001 * 109.47083 * 59.99877 * 3 2 1 26 26 H 1.09002 * 109.46890 * 299.99808 * 4 2 1 27 27 H 1.09000 * 109.47207 * 59.99662 * 4 2 1 28 28 H 1.08996 * 109.47367 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47148 * 59.99951 * 5 2 1 30 30 H 1.09001 * 109.46900 * 300.00103 * 5 2 1 31 31 H 1.08009 * 124.59252 * 0.03152 * 10 9 7 32 32 H 1.09008 * 109.47108 * 240.01736 * 13 12 11 33 33 H 0.96700 * 113.99955 * 299.99564 * 14 13 12 34 34 H 1.08002 * 123.44938 * 180.25178 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 3.9360 -0.8787 1.5207 7 6 4.5485 0.2812 1.8313 8 8 3.8868 1.2664 2.0948 9 6 6.0168 0.3549 1.8514 10 6 6.8255 -0.7024 1.5680 11 16 8.4668 -0.2583 1.6867 12 6 8.0663 1.3919 2.1297 13 6 9.0768 2.4716 2.4197 14 8 8.8963 3.5520 1.5018 15 14 10.7963 1.7792 2.2333 16 1 10.9835 1.2860 0.8452 17 1 11.7920 2.8430 2.5197 18 1 10.9839 0.6565 3.1871 19 6 6.7499 1.5587 2.1683 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.5739 1.7565 -0.0005 24 1 2.1206 2.2703 -0.8900 25 1 2.1206 2.2703 0.8900 26 1 2.1207 -1.9058 -1.5211 27 1 2.1206 -0.3643 -2.4111 28 1 3.5739 -0.8778 -1.5214 29 1 2.1207 -1.9059 1.5211 30 1 2.1207 -0.3644 2.4111 31 1 6.4747 -1.6889 1.3029 32 1 8.9393 2.8337 3.4386 33 1 9.0043 3.3020 0.5740 34 1 6.2758 2.4972 2.4150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6894092_4858416.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:29 Heat of formation + Delta-G solvation = -113.567769 kcal Electronic energy + Delta-G solvation = -17127.305259 eV Core-core repulsion = 14276.254020 eV Total energy + Delta-G solvation = -2851.051239 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 274.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.51152 -39.08746 -37.52953 -37.06883 -32.05983 -29.69104 -28.46515 -28.37794 -28.26214 -27.02260 -25.51049 -22.31985 -20.70205 -18.94080 -18.62362 -17.73987 -17.47847 -17.30478 -16.30042 -15.76875 -15.31424 -14.64951 -14.51038 -14.30600 -14.15131 -14.01435 -13.83546 -13.75903 -13.66988 -13.37574 -13.24980 -13.07865 -12.97889 -12.69661 -12.52521 -12.36030 -12.20162 -11.91917 -11.41181 -10.86570 -10.78313 -10.61139 -10.41323 -10.04394 -9.60855 -0.47852 0.25630 0.58951 0.62760 1.08511 1.42074 1.48482 1.51889 1.58002 1.86722 1.90054 1.98138 2.10578 2.55460 3.39302 3.65448 3.89891 4.00744 4.23106 4.25204 4.54574 4.67423 4.68518 4.73478 4.76664 4.79759 4.80768 4.81341 4.86232 4.91972 5.07770 5.29691 5.51277 5.59377 5.62343 6.62523 6.69931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.057 2.943 3 C -0.457 4.457 4 C -0.452 4.452 5 C -0.256 4.256 6 O -0.335 6.335 7 C 0.509 3.491 8 O -0.515 6.515 9 C -0.177 4.177 10 C -0.166 4.166 11 S 0.226 5.774 12 C -0.246 4.246 13 C -0.041 4.041 14 O -0.548 6.548 15 Si 0.918 3.082 16 H -0.228 1.228 17 H -0.241 1.241 18 H -0.233 1.233 19 C -0.065 4.065 20 H 0.069 0.931 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.073 0.927 31 H 0.200 0.800 32 H 0.133 0.867 33 H 0.391 0.609 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -4.098 -1.788 4.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.249 2.751 3 C -0.562 4.562 4 C -0.560 4.560 5 C -0.374 4.374 6 O -0.251 6.251 7 C 0.353 3.647 8 O -0.406 6.406 9 C -0.193 4.193 10 C -0.304 4.304 11 S 0.493 5.507 12 C -0.362 4.362 13 C -0.153 4.153 14 O -0.356 6.356 15 Si 0.738 3.262 16 H -0.151 1.151 17 H -0.164 1.164 18 H -0.156 1.156 19 C -0.093 4.093 20 H 0.088 0.912 21 H 0.096 0.904 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.092 0.908 31 H 0.218 0.782 32 H 0.150 0.850 33 H 0.240 0.760 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.909 -4.619 -1.422 6.216 hybrid contribution -2.089 0.863 0.085 2.262 sum 1.820 -3.756 -1.337 4.382 Atomic orbital electron populations 1.26067 1.19370 1.05469 1.04992 0.78833 0.67152 0.64624 0.64472 1.26558 1.05169 1.21026 1.03413 1.26116 1.06129 1.08697 1.15022 1.28713 0.78535 1.12241 1.17862 1.86453 1.23598 1.34924 1.80111 1.20693 0.88670 0.81342 0.74023 1.90853 1.66755 1.37145 1.45815 1.19471 0.90179 0.95429 1.14183 1.26245 0.99061 1.04186 1.00903 1.83165 1.02650 1.02259 1.62644 1.24930 0.98548 1.00342 1.12401 1.24545 1.05123 0.88019 0.97663 1.86524 1.94507 1.33814 1.20711 0.85934 0.75475 0.81243 0.83580 1.15059 1.16396 1.15560 1.20946 0.92173 0.97638 0.98555 0.91199 0.90418 0.89856 0.93194 0.91641 0.92116 0.89985 0.90693 0.91718 0.84798 0.90830 0.78249 0.84989 0.75967 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.27 8.65 113.37 0.98 2.25 16 2 Si 1.06 -2.03 12.12 68.60 0.83 -1.20 16 3 C -0.46 -2.34 7.10 113.37 0.80 -1.53 16 4 C -0.45 0.90 8.65 113.37 0.98 1.89 16 5 C -0.26 -0.07 5.40 113.37 0.61 0.55 16 6 O -0.34 -1.42 9.57 -57.08 -0.55 -1.96 16 7 C 0.51 3.87 6.70 70.13 0.47 4.34 16 8 O -0.51 -6.16 12.50 19.62 0.25 -5.92 16 9 C -0.18 -0.80 5.98 -19.88 -0.12 -0.92 16 10 C -0.17 0.12 10.55 67.32 0.71 0.83 16 11 S 0.23 -0.62 20.18 -56.49 -1.14 -1.76 16 12 C -0.25 -0.01 5.68 24.51 0.14 0.13 16 13 C -0.04 0.08 2.95 71.23 0.21 0.29 16 14 O -0.55 0.03 12.85 -148.98 -1.91 -1.88 16 15 Si 0.92 -3.16 26.19 68.60 1.80 -1.36 16 16 H -0.23 0.96 7.11 99.48 0.71 1.66 16 17 H -0.24 0.16 7.11 99.48 0.71 0.87 16 18 H -0.23 0.75 7.11 99.48 0.71 1.46 16 19 C -0.06 -0.26 9.91 22.68 0.22 -0.04 16 20 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 21 H 0.08 -0.22 7.96 -2.39 -0.02 -0.24 16 22 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 23 H 0.05 0.42 6.28 -2.39 -0.01 0.40 16 24 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 25 H 0.06 0.50 7.42 -2.39 -0.02 0.48 16 26 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 27 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 29 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 30 H 0.07 0.15 7.53 -2.39 -0.02 0.14 16 31 H 0.20 -1.00 8.02 -2.91 -0.02 -1.03 16 32 H 0.13 -0.44 7.96 -2.38 -0.02 -0.46 16 33 H 0.39 -2.62 8.70 -74.06 -0.64 -3.27 16 34 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 Total: 0.00 -12.57 303.96 5.50 -7.08 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: 1.21 Total: -0.78 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.01 Total: 7.78 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -2.21 Total: -9.77 kcal Atomic # 14 Polarization: -5.19 SS G_CDS: 2.63 Total: -2.56 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.14 Total: -1.76 kcal Total: -12.57 5.50 -7.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6894092_4858416.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.491 kcal (2) G-P(sol) polarization free energy of solvation -12.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds