Wall clock time and date at job start Tue Mar 9 2021 12:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00324 * 2 1 4 4 C 1.53005 * 112.90357 * 66.09676 * 3 2 1 5 5 F 1.39900 * 109.47290 * 283.52836 * 4 3 2 6 6 F 1.39903 * 109.46996 * 43.52595 * 4 3 2 7 7 F 1.39893 * 109.46869 * 163.52671 * 4 3 2 8 8 C 1.53784 * 113.61579 * 294.85011 * 3 2 1 9 9 C 1.53780 * 87.17256 * 270.92170 * 8 3 2 10 10 H 1.08993 * 113.61634 * 219.97826 * 9 8 3 11 11 C 1.53001 * 113.61196 * 89.07132 * 9 8 3 12 12 O 1.45202 * 109.46854 * 175.00052 * 11 9 8 13 13 C 1.34717 * 117.00094 * 180.02562 * 12 11 9 14 14 O 1.21468 * 119.99593 * 359.97438 * 13 12 11 15 15 C 1.47725 * 119.99843 * 180.02562 * 13 12 11 16 16 C 1.39611 * 120.14759 * 179.72206 * 15 13 12 17 17 C 1.37960 * 119.84802 * 179.74734 * 16 15 13 18 18 C 1.50704 * 119.92834 * 180.27362 * 17 16 15 19 19 O 1.42902 * 109.46908 * 65.27495 * 18 17 16 20 20 Si 1.86296 * 109.47424 * 185.27758 * 18 17 16 21 21 C 1.38353 * 120.14886 * 0.55342 * 17 16 15 22 22 C 1.38381 * 120.30132 * 359.70032 * 21 17 16 23 23 C 1.37924 * 120.15291 * 0.02562 * 22 21 17 24 24 C 1.53783 * 87.08257 * 334.52806 * 9 8 3 25 25 H 1.08998 * 109.47172 * 302.65107 * 1 2 3 26 26 H 1.09004 * 109.47224 * 62.65019 * 1 2 3 27 27 H 1.08995 * 109.47179 * 182.64702 * 1 2 3 28 28 H 1.09000 * 113.61298 * 156.32989 * 8 3 2 29 29 H 1.08998 * 113.61402 * 25.50912 * 8 3 2 30 30 H 1.09000 * 109.47672 * 295.00100 * 11 9 8 31 31 H 1.08992 * 109.47082 * 55.00580 * 11 9 8 32 32 H 1.08006 * 120.07294 * 359.97438 * 16 15 13 33 33 H 1.08998 * 109.46690 * 305.27849 * 18 17 16 34 34 H 0.96702 * 114.00012 * 180.02562 * 19 18 17 35 35 H 1.48497 * 110.00259 * 178.68405 * 20 18 17 36 36 H 1.48507 * 109.99786 * 299.99989 * 20 18 17 37 37 H 1.08001 * 119.84816 * 179.72532 * 21 17 16 38 38 H 1.08005 * 119.92670 * 180.02562 * 22 21 17 39 39 H 1.07996 * 120.07437 * 180.02562 * 23 22 21 40 40 H 1.08994 * 113.62161 * 139.97828 * 24 9 8 41 41 H 1.09004 * 113.61179 * 270.80013 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7308 2.0817 1.2885 5 9 0.4145 2.5554 1.2715 6 9 1.9081 1.2371 2.3896 7 9 2.6141 3.1624 1.3827 8 6 1.7199 2.1091 -1.2786 9 6 2.9943 1.4836 -1.8699 10 1 3.5891 2.1803 -2.4605 11 6 2.7488 0.1541 -2.5862 12 8 3.9815 -0.2953 -3.2082 13 6 3.9362 -1.4592 -3.8849 14 8 2.8955 -2.0819 -3.9530 15 6 5.1524 -1.9788 -4.5431 16 6 5.1104 -3.1876 -5.2403 17 6 6.2486 -3.6645 -5.8571 18 6 6.2037 -4.9661 -6.6154 19 8 5.3438 -4.8278 -7.7483 20 14 7.9197 -5.4103 -7.1887 21 6 7.4326 -2.9533 -5.7761 22 6 7.4826 -1.7571 -5.0822 23 6 6.3508 -1.2660 -4.4657 24 6 3.4913 1.3215 -0.4236 25 1 -0.3633 0.5544 0.8652 26 1 -0.3634 0.4721 -0.9128 27 1 -0.3633 -1.0265 0.0475 28 1 1.7867 3.1883 -1.1406 29 1 0.8064 1.8033 -1.7885 30 1 2.4134 -0.5909 -1.8647 31 1 1.9843 0.2892 -3.3511 32 1 4.1880 -3.7463 -5.2998 33 1 5.8231 -5.7529 -5.9642 34 1 5.2668 -5.6294 -8.2838 35 1 7.8941 -6.7078 -7.9105 36 1 8.4498 -4.3452 -8.0774 37 1 8.3218 -3.3334 -6.2571 38 1 8.4100 -1.2067 -5.0233 39 1 6.3911 -0.3321 -3.9248 40 1 4.0075 0.3788 -0.2424 41 1 4.0436 2.1848 -0.0524 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7081094_17321610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:35 Heat of formation + Delta-G solvation = -240.107408 kcal Electronic energy + Delta-G solvation = -30839.875524 eV Core-core repulsion = 25852.508474 eV Total energy + Delta-G solvation = -4987.367050 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.26622 -48.79773 -48.73636 -41.94157 -41.22584 -40.14308 -37.88346 -37.67559 -36.90942 -33.21264 -32.29385 -30.71388 -28.27448 -27.63609 -26.81078 -26.76265 -25.37248 -23.34759 -22.83014 -21.76203 -20.67372 -19.80440 -19.55569 -19.26299 -18.80953 -18.61031 -18.17817 -17.59246 -17.30367 -17.15297 -16.52075 -16.50074 -16.03562 -15.75763 -15.67505 -15.61838 -15.31140 -15.28032 -15.15093 -14.96934 -14.88435 -14.79918 -14.65367 -14.24658 -14.03633 -13.91617 -13.70387 -13.39563 -13.28347 -13.16551 -12.80544 -12.67769 -12.39385 -12.17273 -12.06202 -11.81179 -11.74163 -11.72245 -11.57695 -10.82445 -10.56138 -10.16308 -9.96195 -4.92270 -0.44195 0.21411 1.25086 1.38050 1.43590 1.52107 1.61677 1.94982 2.06955 2.54981 2.60008 2.61687 2.87086 3.23124 3.28749 3.31639 3.42304 3.57617 3.68708 3.77643 3.88056 4.00612 4.19687 4.20753 4.21856 4.22683 4.31449 4.34289 4.41630 4.46987 4.50758 4.60494 4.67634 4.70983 4.76415 4.82340 4.89924 4.97456 5.18644 5.20784 5.31353 5.34747 5.68968 5.75273 6.54736 6.56820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.349 6.349 3 C 0.030 3.970 4 C 0.434 3.566 5 F -0.185 7.185 6 F -0.188 7.188 7 F -0.173 7.173 8 C -0.135 4.135 9 C -0.091 4.091 10 H 0.127 0.873 11 C 0.075 3.925 12 O -0.343 6.343 13 C 0.511 3.489 14 O -0.539 6.539 15 C -0.145 4.145 16 C -0.047 4.047 17 C -0.097 4.097 18 C -0.096 4.096 19 O -0.561 6.561 20 Si 0.780 3.220 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.053 4.053 24 C -0.110 4.110 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.396 0.604 35 H -0.289 1.289 36 H -0.288 1.288 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.091 0.909 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 1.049 -0.773 5.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.267 6.267 3 C -0.013 4.013 4 C 0.380 3.620 5 F -0.166 7.166 6 F -0.170 7.170 7 F -0.155 7.155 8 C -0.172 4.172 9 C -0.109 4.109 10 H 0.145 0.855 11 C 0.002 3.998 12 O -0.259 6.259 13 C 0.358 3.642 14 O -0.431 6.431 15 C -0.146 4.146 16 C -0.065 4.065 17 C -0.098 4.098 18 C -0.204 4.204 19 O -0.371 6.371 20 Si 0.684 3.316 21 C -0.097 4.097 22 C -0.136 4.136 23 C -0.071 4.071 24 C -0.147 4.147 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.148 0.852 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.246 0.754 35 H -0.216 1.216 36 H -0.215 1.215 37 H 0.172 0.828 38 H 0.190 0.810 39 H 0.178 0.822 40 H 0.110 0.890 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.434 1.169 -1.158 5.678 hybrid contribution -2.078 -0.367 -0.274 2.128 sum 3.356 0.801 -1.432 3.736 Atomic orbital electron populations 1.23258 0.78846 1.05005 1.01918 1.88078 1.22005 1.22731 1.93861 1.24318 1.01004 0.86192 0.89758 1.21456 0.74120 0.78705 0.87724 1.93176 1.37271 1.89339 1.96847 1.93190 1.95001 1.71105 1.57660 1.93172 1.68699 1.57022 1.96598 1.23654 0.99705 1.01747 0.92140 1.22037 0.98172 0.95374 0.95323 0.85521 1.23118 0.83597 0.96385 0.96692 1.86465 1.39563 1.37212 1.62683 1.21453 0.88507 0.78728 0.75562 1.90835 1.33522 1.59102 1.59631 1.19188 0.92561 0.98097 1.04778 1.21080 0.98621 0.93686 0.93159 1.19411 0.93869 0.97186 0.99288 1.25213 1.07569 0.97430 0.90145 1.86550 1.67539 1.42228 1.40790 0.94034 0.75852 0.76086 0.85639 1.21642 0.97130 0.94403 0.96521 1.21546 0.99787 0.95692 0.96577 1.21802 0.90480 0.99290 0.95530 1.23404 0.90264 1.06065 0.94943 0.93190 0.91383 0.87444 0.85189 0.88121 0.90306 0.90717 0.86179 0.89169 0.75376 1.21636 1.21467 0.82825 0.80993 0.82164 0.89040 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 10.44 113.37 1.18 1.18 16 2 O -0.35 -0.88 8.36 -148.98 -1.25 -2.12 16 3 C 0.03 -0.02 0.85 -10.17 -0.01 -0.03 16 4 C 0.43 1.02 2.52 71.98 0.18 1.20 16 5 F -0.18 -0.57 15.24 44.97 0.69 0.12 16 6 F -0.19 -1.24 17.10 44.97 0.77 -0.47 16 7 F -0.17 -0.26 15.83 44.97 0.71 0.45 16 8 C -0.14 0.72 6.51 31.12 0.20 0.93 16 9 C -0.09 0.42 4.21 -10.27 -0.04 0.37 16 10 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 11 C 0.08 0.09 5.06 71.98 0.36 0.45 16 12 O -0.34 -1.21 9.47 -56.27 -0.53 -1.74 16 13 C 0.51 4.20 7.90 70.33 0.56 4.75 16 14 O -0.54 -7.89 16.14 19.94 0.32 -7.57 16 15 C -0.15 -0.72 5.87 -20.10 -0.12 -0.84 16 16 C -0.05 -0.29 9.23 22.54 0.21 -0.08 16 17 C -0.10 -0.21 5.38 -19.90 -0.11 -0.31 16 18 C -0.10 0.04 2.79 71.24 0.20 0.24 16 19 O -0.56 -1.79 12.81 -148.98 -1.91 -3.70 16 20 Si 0.78 -3.06 29.84 68.60 2.05 -1.02 16 21 C -0.08 0.19 8.67 22.33 0.19 0.39 16 22 C -0.12 0.54 10.03 22.23 0.22 0.76 16 23 C -0.05 0.07 9.62 22.54 0.22 0.29 16 24 C -0.11 0.38 6.90 31.21 0.22 0.60 16 25 H 0.05 0.00 6.25 -2.39 -0.01 -0.01 16 26 H 0.07 -0.26 6.76 -2.38 -0.02 -0.28 16 27 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.13 -1.08 8.06 -2.39 -0.02 -1.10 16 29 H 0.10 -0.62 6.70 -2.39 -0.02 -0.64 16 30 H 0.08 0.34 6.12 -2.39 -0.01 0.33 16 31 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.12 1.09 7.65 -2.91 -0.02 1.06 16 33 H 0.09 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.40 -1.97 8.74 -74.06 -0.65 -2.62 16 35 H -0.29 -0.26 7.11 99.48 0.71 0.45 16 36 H -0.29 -0.50 7.05 99.48 0.70 0.20 16 37 H 0.15 -1.08 4.85 -2.91 -0.01 -1.09 16 38 H 0.17 -1.93 8.06 -2.91 -0.02 -1.95 16 39 H 0.16 -0.89 7.61 -2.91 -0.02 -0.91 16 40 H 0.09 -0.15 8.10 -2.39 -0.02 -0.17 16 41 H 0.13 -0.87 7.02 -2.38 -0.02 -0.88 16 Total: 0.00 -20.12 353.21 4.80 -15.32 By element: Atomic # 1 Polarization: -9.64 SS G_CDS: 0.48 Total: -9.15 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 3.47 Total: 9.89 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -3.37 Total: -15.14 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 2.17 Total: 0.10 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.05 Total: -1.02 kcal Total: -20.12 4.80 -15.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7081094_17321610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.785 kcal (2) G-P(sol) polarization free energy of solvation -20.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds