Wall clock time and date at job start Tue Mar 9 2021 13:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 113.99915 * 2 1 4 4 C 1.53004 * 112.85085 * 294.12946 * 3 2 1 5 5 F 1.39899 * 109.47146 * 195.74543 * 4 3 2 6 6 F 1.39892 * 109.47133 * 315.75055 * 4 3 2 7 7 F 1.39901 * 109.46899 * 75.75239 * 4 3 2 8 8 C 1.53786 * 113.61477 * 162.82351 * 3 2 1 9 9 C 1.53775 * 87.08153 * 270.88461 * 8 3 2 10 10 H 1.09001 * 113.69623 * 220.00627 * 9 8 3 11 11 C 1.53002 * 113.61616 * 89.11478 * 9 8 3 12 12 O 1.45203 * 109.46954 * 87.50264 * 11 9 8 13 13 C 1.34753 * 116.99622 * 180.02562 * 12 11 9 14 14 O 1.21503 * 120.00327 * 359.97438 * 13 12 11 15 15 C 1.47523 * 119.99498 * 180.02562 * 13 12 11 16 16 C 1.38215 * 119.29287 * 179.97438 * 15 13 12 17 17 C 1.40597 * 119.34431 * 179.97438 * 16 15 13 18 18 N 1.32033 * 135.61424 * 179.67973 * 17 16 15 19 19 N 1.28493 * 110.76901 * 179.97438 * 18 17 16 20 20 C 1.34187 * 112.09557 * 0.38413 * 19 18 17 21 21 C 1.50706 * 126.54557 * 179.78778 * 20 19 18 22 22 O 1.42896 * 109.46946 * 104.97595 * 21 20 19 23 23 Si 1.86305 * 109.47031 * 344.98301 * 21 20 19 24 24 C 1.38141 * 106.91354 * 359.77435 * 20 19 18 25 25 C 1.40912 * 136.20135 * 179.97438 * 24 20 19 26 26 C 1.35361 * 119.75972 * 180.02562 * 25 24 20 27 27 C 1.53780 * 113.61385 * 65.32820 * 3 2 1 28 28 H 1.09001 * 109.47276 * 183.09261 * 1 2 3 29 29 H 1.08997 * 109.47308 * 303.08948 * 1 2 3 30 30 H 1.08998 * 109.47494 * 63.09282 * 1 2 3 31 31 H 1.08997 * 113.61221 * 156.33499 * 8 3 2 32 32 H 1.09002 * 113.61062 * 25.43530 * 8 3 2 33 33 H 1.09007 * 109.47009 * 327.50426 * 11 9 8 34 34 H 1.09001 * 109.47570 * 207.50360 * 11 9 8 35 35 H 1.07998 * 120.32656 * 359.97438 * 16 15 13 36 36 H 0.97009 * 123.94958 * 180.19831 * 19 18 17 37 37 H 1.08993 * 109.47297 * 224.98244 * 21 20 19 38 38 H 0.96701 * 114.00425 * 300.00929 * 22 21 20 39 39 H 1.48493 * 109.99964 * 179.97438 * 23 21 20 40 40 H 1.48500 * 109.99814 * 301.31621 * 23 21 20 41 41 H 1.07992 * 120.12348 * 0.05434 * 25 24 20 42 42 H 1.07993 * 119.23799 * 179.97438 * 26 25 24 43 43 H 1.09000 * 113.61285 * 334.56795 * 27 3 2 44 44 H 1.09007 * 113.61415 * 203.66486 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.7252 2.0827 -1.2868 5 9 2.5967 3.1735 -1.3754 6 9 1.9146 1.2436 -2.3900 7 9 0.4038 2.5418 -1.2713 8 6 3.4905 1.3207 0.4161 9 6 3.0003 1.4808 1.8648 10 1 3.5973 2.1762 2.4549 11 6 2.7580 0.1504 2.5805 12 8 3.9935 -0.3001 3.1961 13 6 3.9512 -1.4658 3.8707 14 8 2.9104 -2.0886 3.9430 15 6 5.1684 -1.9853 4.5225 16 6 5.1084 -3.1822 5.2111 17 6 6.2680 -3.6786 5.8322 18 7 6.5708 -4.7434 6.5519 19 7 7.8105 -4.7276 6.8895 20 6 8.4454 -3.6392 6.4283 21 6 9.8971 -3.2917 6.6359 22 8 10.6218 -3.5319 5.4280 23 14 10.5991 -4.3470 8.0014 24 6 7.5146 -2.8980 5.7265 25 6 7.5113 -1.6844 5.0105 26 6 6.3684 -1.2500 4.4297 27 6 1.7233 2.1074 1.2804 28 1 -0.3634 -1.0262 0.0554 29 1 -0.3634 0.5610 0.8610 30 1 -0.3634 0.4650 -0.9164 31 1 4.0400 2.1849 0.0431 32 1 4.0057 0.3781 0.2311 33 1 2.4190 -0.5936 1.8595 34 1 1.9969 0.2846 3.3492 35 1 4.1801 -3.7307 5.2714 36 1 8.2368 -5.4201 7.4185 37 1 9.9836 -2.2400 6.9086 38 1 10.5885 -4.4496 5.1251 39 1 12.0304 -4.0145 8.2156 40 1 9.8337 -4.1302 9.2553 41 1 8.4174 -1.1032 4.9250 42 1 6.3753 -0.3185 3.8833 43 1 0.8120 1.8000 1.7932 44 1 1.7898 3.1868 1.1436 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_17321610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:34 Heat of formation + Delta-G solvation = -170.554612 kcal Electronic energy + Delta-G solvation = -35858.367382 eV Core-core repulsion = 30331.174646 eV Total energy + Delta-G solvation = -5527.192736 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.117 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -51.24895 -48.77860 -48.72315 -43.82559 -41.84840 -41.07988 -38.59200 -37.95613 -37.68654 -36.88051 -33.53531 -32.50994 -31.00603 -30.69465 -28.28184 -27.75784 -26.95213 -26.76118 -26.01702 -23.96356 -23.36580 -22.35144 -21.28091 -20.67157 -19.83311 -19.54794 -19.45902 -19.22875 -19.06678 -18.17113 -17.90661 -17.55758 -17.41348 -17.17793 -16.99359 -16.49415 -16.04535 -15.78255 -15.65336 -15.61539 -15.59447 -15.48706 -15.30870 -15.17007 -15.02425 -14.89226 -14.82666 -14.73316 -14.29753 -14.21080 -13.92844 -13.58485 -13.36458 -13.24689 -13.16132 -13.03761 -12.76244 -12.56891 -12.36224 -12.25664 -12.03808 -11.76650 -11.67513 -11.58029 -11.49945 -11.38005 -10.80009 -10.61063 -10.02974 -8.90141 -5.18556 -0.79198 0.12134 1.06461 1.21880 1.36519 1.46943 1.53801 1.54816 1.74004 1.92523 2.09609 2.57135 2.63490 2.67250 2.88987 3.01793 3.15582 3.31232 3.32266 3.45686 3.49073 3.60722 3.78472 3.85797 3.99858 4.08635 4.22214 4.24823 4.25383 4.34184 4.38634 4.41578 4.43587 4.52015 4.53191 4.63866 4.70785 4.78681 4.83291 4.85041 4.99591 5.11385 5.21751 5.29095 5.40591 5.68077 5.71523 5.83960 6.60380 6.63904 6.69752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.030 3.970 4 C 0.434 3.566 5 F -0.174 7.174 6 F -0.189 7.189 7 F -0.185 7.185 8 C -0.112 4.112 9 C -0.091 4.091 10 H 0.127 0.873 11 C 0.075 3.925 12 O -0.342 6.342 13 C 0.514 3.486 14 O -0.535 6.535 15 C -0.104 4.104 16 C -0.010 4.010 17 C 0.025 3.975 18 N -0.294 5.294 19 N -0.310 5.310 20 C 0.004 3.996 21 C -0.036 4.036 22 O -0.542 6.542 23 Si 0.773 3.227 24 C -0.144 4.144 25 C -0.056 4.056 26 C -0.103 4.103 27 C -0.135 4.135 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.462 0.538 37 H 0.136 0.864 38 H 0.398 0.602 39 H -0.280 1.280 40 H -0.278 1.278 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.102 0.898 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 -0.105 3.456 6.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.267 6.267 3 C -0.012 4.012 4 C 0.379 3.621 5 F -0.155 7.155 6 F -0.170 7.170 7 F -0.167 7.167 8 C -0.149 4.149 9 C -0.109 4.109 10 H 0.145 0.855 11 C 0.002 3.998 12 O -0.258 6.258 13 C 0.361 3.639 14 O -0.426 6.426 15 C -0.109 4.109 16 C -0.031 4.031 17 C -0.120 4.120 18 N -0.131 5.131 19 N -0.023 5.023 20 C -0.132 4.132 21 C -0.147 4.147 22 O -0.349 6.349 23 Si 0.675 3.325 24 C -0.152 4.152 25 C -0.076 4.076 26 C -0.122 4.122 27 C -0.172 4.172 28 H 0.126 0.874 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.156 0.844 36 H 0.312 0.688 37 H 0.153 0.847 38 H 0.249 0.751 39 H -0.206 1.206 40 H -0.204 1.204 41 H 0.172 0.828 42 H 0.175 0.825 43 H 0.121 0.879 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.999 -0.815 4.694 6.905 hybrid contribution -0.650 0.928 -0.788 1.380 sum 4.348 0.113 3.906 5.846 Atomic orbital electron populations 1.23254 0.78833 1.05113 1.01790 1.88082 1.22022 1.22700 1.93848 1.24278 1.00929 0.86212 0.89801 1.21485 0.74144 0.78723 0.87728 1.93173 1.69446 1.56302 1.96628 1.93185 1.94848 1.71445 1.57531 1.93180 1.36820 1.89803 1.96850 1.23360 0.90305 1.05993 0.95204 1.22041 0.98124 0.95495 0.95224 0.85526 1.23135 0.83543 0.96272 0.96899 1.86482 1.39399 1.36986 1.62888 1.21228 0.88237 0.78835 0.75631 1.90853 1.33402 1.59011 1.59342 1.18762 0.92533 0.96666 1.02959 1.20239 0.96194 0.93672 0.92999 1.20466 0.95712 0.93922 1.01862 1.73601 0.97692 1.22754 1.19100 1.43527 1.05544 1.17741 1.35510 1.22125 0.97580 0.90666 1.02868 1.24830 0.83939 1.08353 0.97570 1.86565 1.71557 1.35720 1.41031 0.94431 0.78316 0.85707 0.74032 1.19723 0.92524 0.98734 1.04260 1.20312 0.99068 0.93172 0.95084 1.20879 0.90261 1.00705 1.00365 1.23660 0.99741 1.01709 0.92080 0.87368 0.91209 0.93432 0.85082 0.89094 0.90277 0.90375 0.84409 0.68762 0.84726 0.75131 1.20628 1.20404 0.82799 0.82531 0.87945 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 10.33 113.37 1.17 1.17 16 2 O -0.35 -0.92 8.36 -148.98 -1.25 -2.17 16 3 C 0.03 -0.01 0.84 -10.26 -0.01 -0.02 16 4 C 0.43 1.17 2.52 71.98 0.18 1.35 16 5 F -0.17 -0.34 15.82 44.97 0.71 0.37 16 6 F -0.19 -1.33 17.11 44.97 0.77 -0.56 16 7 F -0.19 -0.62 15.34 44.97 0.69 0.07 16 8 C -0.11 0.33 6.89 31.12 0.21 0.55 16 9 C -0.09 0.41 4.21 -10.27 -0.04 0.36 16 10 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 11 C 0.07 0.07 5.06 71.98 0.36 0.43 16 12 O -0.34 -1.19 9.37 -56.64 -0.53 -1.72 16 13 C 0.51 3.99 7.88 70.27 0.55 4.55 16 14 O -0.54 -7.17 16.04 19.83 0.32 -6.86 16 15 C -0.10 -0.59 5.86 -20.15 -0.12 -0.71 16 16 C -0.01 -0.07 9.64 22.84 0.22 0.15 16 17 C 0.03 0.16 7.53 42.12 0.32 0.48 16 18 N -0.29 -1.30 12.20 -48.83 -0.60 -1.89 16 19 N -0.31 1.05 6.26 -46.77 -0.29 0.76 16 20 C 0.00 -0.01 6.19 42.18 0.26 0.25 16 21 C -0.04 0.25 3.03 71.24 0.22 0.47 16 22 O -0.54 3.36 12.88 -148.98 -1.92 1.44 16 23 Si 0.77 -7.43 31.14 68.60 2.14 -5.30 16 24 C -0.14 -0.36 6.38 -20.22 -0.13 -0.49 16 25 C -0.06 -0.02 10.05 22.26 0.22 0.21 16 26 C -0.10 -0.13 9.47 22.29 0.21 0.08 16 27 C -0.13 0.72 6.52 31.12 0.20 0.92 16 28 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.07 -0.29 6.60 -2.39 -0.02 -0.30 16 30 H 0.05 0.01 6.56 -2.39 -0.02 0.00 16 31 H 0.13 -0.77 7.03 -2.39 -0.02 -0.79 16 32 H 0.09 -0.09 8.10 -2.39 -0.02 -0.11 16 33 H 0.08 0.32 6.12 -2.38 -0.01 0.31 16 34 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.14 1.11 7.57 -2.91 -0.02 1.09 16 36 H 0.46 -5.31 6.88 -219.97 -1.51 -6.82 16 37 H 0.14 -0.96 7.96 -2.39 -0.02 -0.98 16 38 H 0.40 -5.57 8.70 -74.06 -0.64 -6.21 16 39 H -0.28 0.57 7.11 99.48 0.71 1.28 16 40 H -0.28 1.16 7.11 99.48 0.71 1.86 16 41 H 0.15 -0.65 8.06 -2.91 -0.02 -0.68 16 42 H 0.16 -0.43 7.51 -2.91 -0.02 -0.45 16 43 H 0.10 -0.67 6.64 -2.39 -0.02 -0.68 16 44 H 0.13 -1.07 8.04 -2.38 -0.02 -1.08 16 Total: 0.00 -23.82 381.30 2.87 -20.95 By element: Atomic # 1 Polarization: -13.83 SS G_CDS: -1.01 Total: -14.84 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 3.84 Total: 9.74 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: -0.89 Total: -1.14 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -3.38 Total: -9.30 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 2.17 Total: -0.12 kcal Atomic # 14 Polarization: -7.43 SS G_CDS: 2.14 Total: -5.30 kcal Total: -23.82 2.87 -20.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_17321610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.604 kcal (2) G-P(sol) polarization free energy of solvation -23.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds