Wall clock time and date at job start Tue Mar 9 2021 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 H 1.48506 * 109.47357 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47244 * 299.99766 * 3 2 1 6 6 H 1.48503 * 109.47274 * 59.99882 * 3 2 1 7 7 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 8 8 C 1.34539 * 120.20246 * 250.27729 * 7 2 1 9 9 O 1.33723 * 122.84918 * 180.02562 * 8 7 2 10 10 C 1.34876 * 122.41154 * 359.97438 * 9 8 7 11 11 C 1.40416 * 119.68215 * 0.02562 * 10 9 8 12 12 C 1.39387 * 120.24273 * 179.97438 * 11 10 9 13 13 C 1.37853 * 119.52060 * 359.97438 * 12 11 10 14 14 Br 1.89101 * 119.85918 * 179.97438 * 13 12 11 15 15 C 1.38839 * 120.27718 * 359.97438 * 13 12 11 16 16 C 1.37823 * 120.70138 * 0.06512 * 15 13 12 17 17 C 1.50704 * 120.03918 * 180.02562 * 16 15 13 18 18 O 1.45199 * 109.47052 * 0.02562 * 17 16 15 19 19 C 1.34713 * 117.00240 * 179.97438 * 18 17 16 20 20 O 1.21466 * 119.99509 * 0.02562 * 19 18 17 21 21 C 1.47723 * 120.00088 * 179.97438 * 19 18 17 22 22 C 1.39627 * 120.14900 * 0.27954 * 21 19 18 23 23 C 1.37940 * 119.84677 * 179.97438 * 22 21 19 24 24 C 1.38379 * 120.15140 * 0.02562 * 23 22 21 25 Xx 1.80997 * 119.84986 * 180.02562 * 24 23 22 26 25 F 9.85079 * 163.09147 * 219.90577 * 17 1 2 27 26 F 1.61002 * 90.00093 * 135.00015 * 25 24 23 28 27 F 1.61002 * 89.99907 * 315.00015 * 25 24 23 29 28 F 1.61000 * 90.00044 * 224.99975 * 25 24 23 30 29 F 1.61000 * 89.99956 * 44.99975 * 25 24 23 31 30 C 1.38369 * 120.29934 * 359.97438 * 24 23 22 32 31 C 1.37946 * 120.14969 * 359.72384 * 31 24 23 33 32 C 1.41996 * 120.20664 * 70.00082 * 7 2 1 34 33 O 1.21922 * 121.40194 * 0.24038 * 33 7 2 35 34 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 36 35 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 37 36 H 1.07992 * 118.57938 * 359.97438 * 8 7 2 38 37 H 1.07993 * 120.24092 * 179.97438 * 12 11 10 39 38 H 1.07997 * 119.64417 * 180.02562 * 15 13 12 40 39 H 1.08997 * 109.46994 * 120.00509 * 17 16 15 41 40 H 1.09001 * 109.47230 * 240.00379 * 17 16 15 42 41 H 1.07999 * 120.07785 * 359.97438 * 22 21 19 43 42 H 1.08001 * 119.92788 * 179.97438 * 23 22 21 44 43 H 1.07994 * 119.92071 * 179.97438 * 31 24 23 45 44 H 1.08006 * 120.07340 * 179.97438 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7565 0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5549 2.4565 1.2125 7 6 1.9313 -0.7104 1.2305 8 6 2.5269 -0.0161 2.2171 9 8 2.9922 -0.5920 3.3306 10 6 2.8992 -1.9193 3.5511 11 6 2.2955 -2.7436 2.5879 12 6 2.1936 -4.1169 2.8035 13 6 2.6904 -4.6602 3.9691 14 35 2.5566 -6.5220 4.2718 15 6 3.2884 -3.8461 4.9216 16 6 3.3939 -2.4869 4.7193 17 6 4.0464 -1.6173 5.7630 18 8 4.4783 -2.4409 6.8781 19 6 5.0857 -1.8126 7.9033 20 8 5.2496 -0.6096 7.8669 21 6 5.5514 -2.5865 9.0722 22 6 5.3687 -3.9701 9.1152 23 6 5.8065 -4.6867 10.2096 24 6 6.4248 -4.0374 11.2635 25 9 7.5041 -5.8292 13.9692 26 9 8.3878 -4.1756 12.6762 27 9 5.6054 -5.7959 12.7141 28 9 6.3658 -3.8794 13.6801 29 9 7.6275 -6.0921 11.7102 30 6 6.6090 -2.6664 11.2274 31 6 6.1816 -1.9385 10.1364 32 6 1.7738 -2.1157 1.3584 33 8 1.2386 -2.7771 0.4851 34 1 -0.3933 0.4417 -0.7650 35 1 1.7924 -0.5139 -0.8900 36 1 2.6346 1.0526 2.1046 37 1 1.7289 -4.7508 2.0629 38 1 3.6745 -4.2826 5.8308 39 1 4.9096 -1.1135 5.3281 40 1 3.3313 -0.8740 6.1154 41 1 4.8859 -4.4781 8.2935 42 1 5.6655 -5.7569 10.2443 43 1 7.0919 -2.1659 12.0535 44 1 6.3256 -0.8684 10.1097 RHF calculation, no. of doubly occupied orbitals= 81 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_8760340_484008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:23 Heat of formation + Delta-G solvation = 286.702619 kcal Electronic energy + Delta-G solvation = -43324.225847 eV Core-core repulsion = 36391.272166 eV Total energy + Delta-G solvation = -6932.953681 eV No. of doubly occupied orbitals = 81 Molecular weight (most abundant/longest-lived isotopes) = 511.994 amu Computer time = 42.95 seconds Orbital eigenvalues (eV) -44.38903 -44.24369 -44.19526 -44.10163 -43.54919 -43.31031 -42.10621 -40.66109 -40.11530 -39.74241 -37.87962 -37.67783 -34.72590 -33.78492 -33.28455 -33.02845 -32.80290 -30.67771 -28.38473 -27.44230 -26.07320 -25.26403 -24.51256 -24.29484 -22.61101 -22.16864 -20.67355 -19.79757 -19.41649 -18.62525 -18.54384 -18.29471 -17.90647 -17.42865 -17.00869 -16.76634 -16.59435 -16.42637 -16.29682 -16.22682 -15.79534 -15.53297 -15.46173 -15.41708 -15.36797 -15.23276 -15.07773 -14.95417 -14.77034 -14.75024 -14.33301 -14.25429 -14.17203 -14.15908 -14.08032 -13.98531 -13.96479 -13.92815 -13.90676 -13.62317 -13.61805 -13.26521 -12.97063 -12.83678 -12.62853 -12.30801 -12.30296 -12.11284 -12.02370 -11.93655 -11.85522 -11.78776 -11.46529 -11.40305 -11.13219 -11.06048 -10.93067 -10.65766 -10.37811 -10.28465 -9.53771 -5.26153 -4.80015 -3.25539 -1.33390 -0.81677 -0.66204 -0.56071 0.05706 0.39637 0.90398 0.97173 1.04611 1.06681 1.41267 1.42782 1.53808 1.87804 1.94175 2.30642 2.51961 2.67558 2.82339 2.85467 3.03149 3.15673 3.27778 3.29257 3.32949 3.58316 3.74191 3.77550 3.92674 4.00763 4.04562 4.10830 4.12196 4.20691 4.23806 4.26685 4.35586 4.38410 4.59518 4.63071 4.66330 4.68693 4.79162 4.83233 5.06755 5.11588 5.75517 6.34177 6.35362 6.77123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.233 1.233 5 H -0.250 1.250 6 H -0.232 1.232 7 C -0.298 4.298 8 C 0.159 3.841 9 O -0.200 6.200 10 C 0.163 3.837 11 C -0.228 4.228 12 C -0.010 4.010 13 C -0.121 4.121 14 Br -0.025 7.025 15 C -0.005 4.005 16 C -0.096 4.096 17 C 0.122 3.878 18 O -0.339 6.339 19 C 0.530 3.470 20 O -0.500 6.500 21 C -0.103 4.103 22 C 0.022 3.978 23 C -0.117 4.117 24 C 0.361 3.639 25 F -0.214 7.214 26 F -0.160 7.160 27 F -0.158 7.158 28 F -0.162 7.162 29 F -0.156 7.156 30 C -0.117 4.117 31 C 0.021 3.979 32 C 0.423 3.577 33 O -0.493 6.493 34 H 0.397 0.603 35 H 0.073 0.927 36 H 0.230 0.770 37 H 0.142 0.858 38 H 0.190 0.810 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.227 0.773 42 H 0.198 0.802 43 H 0.194 0.806 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 10.032 -7.896 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.182 4.182 3 Si 0.788 3.212 4 H -0.155 1.155 5 H -0.174 1.174 6 H -0.155 1.155 7 C -0.301 4.301 8 C 0.093 3.907 9 O -0.103 6.103 10 C 0.117 3.883 11 C -0.230 4.230 12 C -0.030 4.030 13 C -0.201 4.201 14 Br 0.061 6.939 15 C -0.024 4.024 16 C -0.097 4.097 17 C 0.049 3.951 18 O -0.256 6.256 19 C 0.374 3.626 20 O -0.387 6.387 21 C -0.104 4.104 22 C 0.005 3.995 23 C -0.134 4.134 24 C 0.357 3.643 25 F -0.214 7.214 26 F -0.159 7.159 27 F -0.157 7.157 28 F -0.161 7.161 29 F -0.155 7.155 30 C -0.134 4.134 31 C 0.004 3.996 32 C 0.309 3.691 33 O -0.376 6.376 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.246 0.754 37 H 0.159 0.841 38 H 0.207 0.793 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.244 0.756 42 H 0.215 0.785 43 H 0.211 0.789 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.756 10.015 -7.586 12.587 hybrid contribution -0.156 -1.044 0.134 1.064 sum -0.911 8.971 -7.452 11.698 Atomic orbital electron populations 1.86457 1.17863 1.82659 1.50596 1.24724 0.85657 1.11850 0.95930 0.85471 0.81007 0.72005 0.82733 1.15535 1.17400 1.15496 1.21069 1.11772 0.95806 1.01409 1.24260 0.87151 0.98638 0.80630 1.83138 1.68486 1.20718 1.37918 1.18954 0.95388 0.80358 0.93609 1.20700 1.08332 0.95467 0.98541 1.21111 0.93067 0.93139 0.95698 1.21895 1.07176 0.92931 0.98075 1.96876 1.97530 1.03364 1.96165 1.21317 0.91897 0.90572 0.98601 1.18821 1.03746 0.94084 0.93071 1.21701 1.00902 0.90359 0.82168 1.86350 1.69400 1.41756 1.28073 1.20368 0.74868 0.85516 0.81887 1.90984 1.52701 1.15652 1.79408 1.19582 1.02543 0.94216 0.94070 1.22093 0.92523 0.91015 0.93845 1.22039 0.97389 1.06616 0.87401 1.28081 0.99810 0.79094 0.57353 2.00000 1.91128 1.44727 1.85533 1.99920 1.80843 1.36951 1.98156 1.99919 1.69196 1.65727 1.80829 1.99920 1.99925 1.27466 1.88759 1.99920 1.97116 1.57790 1.60646 1.21852 1.02351 0.87175 1.02034 1.21672 0.90345 1.02155 0.85404 1.18757 0.76422 0.89018 0.84855 1.90730 1.37224 1.67542 1.42113 0.75242 0.90908 0.75403 0.84061 0.79307 0.86970 0.87152 0.75625 0.78529 0.78928 0.77131 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 528. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -0.68 12.86 -148.98 -1.92 -2.59 16 2 C -0.07 0.14 2.45 71.24 0.17 0.31 16 3 Si 0.97 -8.29 25.32 68.60 1.74 -6.55 16 4 H -0.23 2.28 7.11 99.48 0.71 2.98 16 5 H -0.25 1.67 7.11 99.48 0.71 2.38 16 6 H -0.23 2.30 6.89 99.48 0.69 2.98 16 7 C -0.30 -0.01 5.35 -19.78 -0.11 -0.12 16 8 C 0.16 -1.12 9.99 66.97 0.67 -0.45 16 9 O -0.20 1.52 9.21 -2.72 -0.03 1.50 16 10 C 0.16 -0.82 6.74 22.98 0.15 -0.67 16 11 C -0.23 -0.22 5.89 -20.00 -0.12 -0.33 16 12 C -0.01 0.00 9.40 22.46 0.21 0.21 16 13 C -0.12 0.53 6.22 22.32 0.14 0.67 16 14 Br -0.03 0.09 33.69 -20.37 -0.69 -0.59 16 15 C 0.00 0.05 9.10 22.32 0.20 0.25 16 16 C -0.10 0.93 5.89 -19.78 -0.12 0.82 16 17 C 0.12 -1.67 5.39 71.24 0.38 -1.28 16 18 O -0.34 5.41 7.93 -56.23 -0.45 4.96 16 19 C 0.53 -7.63 7.90 70.33 0.56 -7.07 16 20 O -0.50 4.22 16.14 19.95 0.32 4.55 16 21 C -0.10 1.82 5.87 -20.10 -0.12 1.71 16 22 C 0.02 -0.45 9.62 22.53 0.22 -0.23 16 23 C -0.12 1.60 8.60 22.23 0.19 1.79 16 24 C 0.36 -2.15 4.83 22.33 0.11 -2.05 16 25 F -0.21 -4.99 16.66 44.97 0.75 -4.24 16 26 F -0.16 -1.88 15.30 44.97 0.69 -1.19 16 27 F -0.16 -1.78 15.30 44.97 0.69 -1.09 16 28 F -0.16 -1.92 15.30 44.97 0.69 -1.23 16 29 F -0.16 -1.74 15.30 44.97 0.69 -1.05 16 30 C -0.12 1.41 8.60 22.23 0.19 1.60 16 31 C 0.02 -0.37 9.60 22.54 0.22 -0.16 16 32 C 0.42 2.60 6.98 25.67 0.18 2.78 16 33 O -0.49 -6.85 16.93 -5.06 -0.09 -6.94 16 34 H 0.40 -3.07 8.74 -74.06 -0.65 -3.72 16 35 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 36 H 0.23 -3.22 4.64 -2.91 -0.01 -3.23 16 37 H 0.14 0.37 7.81 -2.91 -0.02 0.35 16 38 H 0.19 -3.10 6.96 -2.91 -0.02 -3.12 16 39 H 0.11 -1.67 8.14 -2.39 -0.02 -1.69 16 40 H 0.11 -1.60 8.14 -2.39 -0.02 -1.62 16 41 H 0.23 -6.17 7.61 -2.91 -0.02 -6.19 16 42 H 0.20 -2.82 7.38 -2.91 -0.02 -2.84 16 43 H 0.19 -2.34 7.38 -2.91 -0.02 -2.36 16 44 H 0.21 -4.39 7.65 -2.91 -0.02 -4.42 16 Total: 0.00 -44.07 431.83 6.79 -37.29 By element: Atomic # 1 Polarization: -21.84 SS G_CDS: 1.25 Total: -20.59 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 3.14 Total: -2.23 kcal Atomic # 8 Polarization: 3.63 SS G_CDS: -2.15 Total: 1.48 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 3.50 Total: -8.80 kcal Atomic # 14 Polarization: -8.29 SS G_CDS: 1.74 Total: -6.55 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -0.69 Total: -0.59 kcal Total: -44.07 6.79 -37.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_8760340_484008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 323.989 kcal (2) G-P(sol) polarization free energy of solvation -44.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 279.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 286.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 42.95 seconds