Wall clock time and date at job start Tue Mar 9 2021 13:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00262 * 2 1 4 4 O 1.20821 * 119.99481 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00154 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47247 * 299.99728 * 5 3 2 7 7 C 1.52997 * 109.47265 * 59.99914 * 5 3 2 8 8 C 1.52999 * 109.47592 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.46626 * 300.00035 * 8 7 5 10 10 H 1.09000 * 109.47050 * 299.99699 * 9 8 7 11 11 C 1.50699 * 109.46866 * 179.97438 * 9 8 7 12 12 O 1.20828 * 120.00000 * 0.02562 * 11 9 8 13 13 O 1.34231 * 120.00154 * 180.02562 * 11 9 8 14 14 C 1.45196 * 117.00262 * 180.02562 * 13 11 9 15 15 C 1.50696 * 109.47357 * 179.97438 * 14 13 11 16 16 C 1.38931 * 120.04304 * 180.02562 * 15 14 13 17 17 O 1.34880 * 120.98433 * 0.02562 * 16 15 14 18 18 C 1.33725 * 122.40924 * 180.02562 * 17 16 15 19 19 C 1.34536 * 122.85500 * 359.95865 * 18 17 16 20 20 C 1.50700 * 120.20326 * 179.97438 * 19 18 17 21 21 O 1.42898 * 109.47288 * 250.02494 * 20 19 18 22 22 Si 1.86301 * 109.46728 * 10.02377 * 20 19 18 23 23 C 1.42003 * 119.59812 * 0.02562 * 19 18 17 24 24 O 1.21923 * 121.40670 * 179.97438 * 23 19 18 25 25 C 1.40461 * 119.33993 * 180.02562 * 16 15 14 26 26 C 1.39351 * 120.23734 * 359.97438 * 25 16 15 27 27 C 1.37887 * 119.52285 * 359.97438 * 26 25 16 28 28 Br 1.89103 * 119.85856 * 180.02562 * 27 26 25 29 29 C 1.37871 * 120.03997 * 359.72341 * 15 14 13 30 30 C 1.52997 * 109.47164 * 59.99702 * 9 8 7 31 31 C 1.52996 * 109.46861 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47174 * 300.00042 * 1 2 3 33 33 H 1.08995 * 109.46900 * 60.00030 * 1 2 3 34 34 H 1.09004 * 109.47274 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47140 * 59.99748 * 7 5 3 36 36 H 1.09002 * 109.47045 * 299.99841 * 7 5 3 37 37 H 1.08993 * 109.47839 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47160 * 59.99666 * 8 7 5 39 39 H 1.09003 * 109.46752 * 299.99695 * 14 13 11 40 40 H 1.09001 * 109.46943 * 59.99499 * 14 13 11 41 41 H 1.07992 * 118.57192 * 179.97438 * 18 17 16 42 42 H 1.09000 * 109.47139 * 130.02361 * 20 19 18 43 43 H 0.96702 * 114.00241 * 60.00287 * 21 20 19 44 44 H 1.48497 * 110.00078 * 58.68142 * 22 20 19 45 45 H 1.48502 * 109.99892 * 179.97438 * 22 20 19 46 46 H 1.08000 * 120.23649 * 180.02562 * 26 25 16 47 47 H 1.08002 * 119.64528 * 359.97438 * 29 15 14 48 48 H 1.09000 * 109.47140 * 60.00051 * 30 9 8 49 49 H 1.09001 * 109.47230 * 179.97438 * 30 9 8 50 50 H 1.08992 * 109.47534 * 60.00272 * 31 5 3 51 51 H 1.08996 * 109.47134 * 299.99466 * 31 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 5.6418 0.6604 -1.2474 9 6 6.0761 2.1276 -1.2473 10 1 5.6871 2.6217 -2.1375 11 6 7.5811 2.2059 -1.2458 12 8 8.2388 1.1923 -1.2454 13 8 8.1909 3.4016 -1.2449 14 6 9.6429 3.4011 -1.2441 15 6 10.1458 4.8217 -1.2438 16 6 11.5116 5.0761 -1.2435 17 8 12.4059 4.0664 -1.2441 18 6 13.7263 4.2785 -1.2434 19 6 14.2677 5.5101 -1.2429 20 6 15.7651 5.6799 -1.2415 21 8 16.1854 6.1909 0.0251 22 14 16.5773 4.0313 -1.5465 23 6 13.4196 6.6490 -1.2425 24 8 13.8748 7.7801 -1.2416 25 6 11.9641 6.4058 -1.2427 26 6 11.0503 7.4580 -1.2426 27 6 9.6989 7.1843 -1.2440 28 35 8.4506 8.6047 -1.2446 29 6 9.2510 5.8706 -1.2500 30 6 5.5286 2.8214 0.0016 31 6 4.0001 2.7420 -0.0002 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.7245 1.0749 -2.1385 36 1 3.8048 -0.4643 -1.2481 37 1 6.0319 0.1666 -2.1373 38 1 6.0309 0.1663 -0.3572 39 1 10.0055 2.8868 -0.3541 40 1 10.0065 2.8875 -2.1341 41 1 14.3866 3.4240 -1.2435 42 1 16.0523 6.3776 -2.0282 43 1 15.9624 5.6202 0.7732 44 1 16.1238 3.4744 -2.8463 45 1 18.0543 4.1853 -1.5482 46 1 11.3982 8.4804 -1.2424 47 1 8.1902 5.6678 -1.2555 48 1 5.9176 2.3272 0.8918 49 1 5.8383 3.8665 0.0019 50 1 3.6101 3.2367 0.8892 51 1 3.6108 3.2355 -0.8907 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9706522_484008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:10 Heat of formation + Delta-G solvation = -215.049584 kcal Electronic energy + Delta-G solvation = -39836.762881 eV Core-core repulsion = 34294.537587 eV Total energy + Delta-G solvation = -5542.225294 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 481.064 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.33182 -41.99818 -41.52266 -40.16395 -39.92609 -39.01744 -37.89853 -37.63668 -37.35655 -34.62919 -33.70307 -33.22923 -32.79450 -31.77841 -30.72157 -28.91436 -28.20924 -27.46898 -26.12524 -25.54396 -24.43218 -23.71910 -23.04527 -22.34865 -21.47350 -20.80429 -20.62023 -19.53535 -19.04970 -18.61042 -18.48599 -17.96663 -17.88276 -17.66645 -17.52445 -17.44167 -17.27761 -16.75696 -16.43418 -16.20949 -16.07485 -15.71930 -15.48834 -15.31771 -15.25604 -15.15934 -14.93406 -14.77725 -14.48486 -14.26329 -14.13788 -14.08520 -13.89481 -13.87885 -13.53353 -13.29183 -13.21848 -12.96559 -12.76256 -12.61190 -12.42823 -12.35624 -12.24030 -12.13784 -12.08503 -11.81938 -11.79277 -11.52304 -11.51319 -11.47857 -11.28868 -11.22087 -11.15389 -10.69389 -10.43506 -10.40036 -9.57578 -5.13583 -0.84285 -0.69343 0.04946 0.34759 0.98293 1.14191 1.15824 1.16645 1.41058 1.42497 1.59421 1.76105 1.97578 2.28394 2.68969 2.87177 3.20284 3.33307 3.40122 3.49697 3.59402 3.65042 3.67034 3.71072 3.76458 3.87673 3.98265 3.99903 4.08071 4.12294 4.18850 4.24911 4.28388 4.30629 4.30998 4.31580 4.34770 4.36086 4.49313 4.56445 4.62871 4.65903 4.70557 4.77281 4.79603 4.84103 4.95986 5.03824 5.12922 5.14077 5.16744 5.29936 5.33334 5.40935 5.42745 5.75858 6.32344 6.67884 6.69619 6.76685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.080 4.080 6 H 0.128 0.872 7 C -0.103 4.103 8 C -0.098 4.098 9 C -0.079 4.079 10 H 0.129 0.871 11 C 0.475 3.525 12 O -0.526 6.526 13 O -0.352 6.352 14 C 0.117 3.883 15 C -0.095 4.095 16 C 0.166 3.834 17 O -0.200 6.200 18 C 0.179 3.821 19 C -0.342 4.342 20 C -0.063 4.063 21 O -0.558 6.558 22 Si 0.803 3.197 23 C 0.423 3.577 24 O -0.498 6.498 25 C -0.227 4.227 26 C -0.011 4.011 27 C -0.121 4.121 28 Br -0.027 7.027 29 C -0.007 4.007 30 C -0.104 4.104 31 C -0.099 4.099 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.247 0.753 42 H 0.089 0.911 43 H 0.395 0.605 44 H -0.258 1.258 45 H -0.297 1.297 46 H 0.142 0.858 47 H 0.178 0.822 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -10.040 1.320 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.429 6.429 5 C -0.099 4.099 6 H 0.145 0.855 7 C -0.141 4.141 8 C -0.136 4.136 9 C -0.098 4.098 10 H 0.147 0.853 11 C 0.319 3.681 12 O -0.414 6.414 13 O -0.269 6.269 14 C 0.043 3.957 15 C -0.097 4.097 16 C 0.120 3.880 17 O -0.102 6.102 18 C 0.114 3.886 19 C -0.344 4.344 20 C -0.170 4.170 21 O -0.366 6.366 22 Si 0.704 3.296 23 C 0.309 3.691 24 O -0.382 6.382 25 C -0.230 4.230 26 C -0.031 4.031 27 C -0.200 4.200 28 Br 0.059 6.941 29 C -0.027 4.027 30 C -0.141 4.141 31 C -0.137 4.137 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.263 0.737 42 H 0.106 0.894 43 H 0.244 0.756 44 H -0.184 1.184 45 H -0.224 1.224 46 H 0.160 0.840 47 H 0.195 0.805 48 H 0.097 0.903 49 H 0.113 0.887 50 H 0.092 0.908 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.533 -9.108 0.437 9.464 hybrid contribution 0.164 1.302 -0.285 1.343 sum -2.368 -7.806 0.152 8.159 Atomic orbital electron populations 1.23499 0.75237 1.05512 1.02341 1.86510 1.24576 1.33283 1.83576 1.24391 0.93051 0.80934 0.70964 1.90676 1.68159 1.37425 1.46688 1.21298 0.84978 1.00152 1.03454 0.85456 1.21499 0.94977 1.01926 0.95689 1.21409 0.94500 0.93244 1.04401 1.21294 0.85140 0.99975 1.03410 0.85322 1.24085 0.92424 0.80451 0.71118 1.90710 1.67699 1.36966 1.46063 1.86405 1.22372 1.34008 1.84099 1.21579 0.77078 0.91630 1.05368 1.18866 0.88139 0.96218 1.06482 1.18862 0.88341 0.84669 0.96090 1.83171 1.15455 1.34879 1.76727 1.24424 0.80081 0.98537 0.85536 1.21960 0.99879 0.94160 1.18449 1.25216 0.90371 1.12254 0.89163 1.86551 1.81360 1.52587 1.16127 0.94460 0.77698 0.74124 0.83325 1.18812 0.87355 0.89555 0.73345 1.90752 1.78893 1.26832 1.41695 1.20732 0.96668 0.93241 1.12314 1.21106 0.90755 0.99825 0.91411 1.21864 0.93379 0.94406 1.10390 1.96849 1.55680 1.43914 1.97641 1.21250 1.02159 0.88263 0.90996 1.21534 0.94247 1.02328 0.96018 1.21414 0.95262 0.93010 1.04016 0.92211 0.92105 0.85442 0.90717 0.89294 0.90305 0.90452 0.87671 0.88070 0.73742 0.89388 0.75551 1.18386 1.22432 0.83992 0.80498 0.90287 0.88727 0.90806 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.36 -0.26 10.47 -51.43 -0.54 -0.80 16 3 C 0.46 0.73 7.26 71.24 0.52 1.24 16 4 O -0.54 -4.41 15.73 21.98 0.35 -4.06 16 5 C -0.08 0.42 2.63 -11.54 -0.03 0.39 16 6 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 7 C -0.10 0.75 5.13 30.59 0.16 0.91 16 8 C -0.10 0.71 4.49 30.60 0.14 0.85 16 9 C -0.08 0.62 2.63 -11.54 -0.03 0.59 16 10 H 0.13 -1.34 8.14 -2.39 -0.02 -1.36 16 11 C 0.48 -1.78 7.25 71.24 0.52 -1.26 16 12 O -0.53 -1.04 15.73 21.96 0.35 -0.70 16 13 O -0.35 1.84 8.58 -51.43 -0.44 1.40 16 14 C 0.12 -0.68 5.38 71.23 0.38 -0.30 16 15 C -0.10 0.36 5.89 -19.79 -0.12 0.24 16 16 C 0.17 -0.30 6.74 22.98 0.15 -0.14 16 17 O -0.20 1.27 9.21 -2.79 -0.03 1.24 16 18 C 0.18 -1.50 9.99 66.97 0.67 -0.83 16 19 C -0.34 0.05 5.32 -19.78 -0.11 -0.06 16 20 C -0.06 -0.04 2.46 71.24 0.17 0.13 16 21 O -0.56 -1.85 12.88 -148.98 -1.92 -3.77 16 22 Si 0.80 -5.83 29.86 68.60 2.05 -3.78 16 23 C 0.42 3.29 6.98 25.67 0.18 3.47 16 24 O -0.50 -8.32 16.93 -5.06 -0.09 -8.40 16 25 C -0.23 -0.84 5.89 -20.00 -0.12 -0.96 16 26 C -0.01 -0.04 9.40 22.45 0.21 0.17 16 27 C -0.12 -0.09 6.22 22.32 0.14 0.04 16 28 Br -0.03 -0.03 33.69 -20.37 -0.69 -0.72 16 29 C -0.01 0.02 9.10 22.32 0.20 0.22 16 30 C -0.10 0.91 5.14 30.61 0.16 1.07 16 31 C -0.10 0.58 4.50 30.61 0.14 0.71 16 32 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 33 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 34 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.09 -0.65 8.11 -2.39 -0.02 -0.67 16 37 H 0.08 -0.47 8.10 -2.39 -0.02 -0.49 16 38 H 0.08 -0.49 8.10 -2.39 -0.02 -0.50 16 39 H 0.11 -0.75 8.13 -2.39 -0.02 -0.77 16 40 H 0.10 -0.66 8.13 -2.39 -0.02 -0.68 16 41 H 0.25 -4.43 4.77 -2.91 -0.01 -4.44 16 42 H 0.09 0.54 7.96 -2.39 -0.02 0.52 16 43 H 0.39 -2.90 8.70 -74.06 -0.64 -3.54 16 44 H -0.26 1.40 7.11 99.48 0.71 2.10 16 45 H -0.30 -0.55 7.11 99.48 0.71 0.16 16 46 H 0.14 0.86 7.81 -2.91 -0.02 0.84 16 47 H 0.18 -1.10 6.96 -2.91 -0.02 -1.12 16 48 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 49 H 0.09 -0.94 8.11 -2.39 -0.02 -0.96 16 50 H 0.07 -0.28 8.10 -2.39 -0.02 -0.30 16 51 H 0.07 -0.32 8.10 -2.39 -0.02 -0.34 16 Total: 0.00 -31.09 448.30 3.98 -27.11 By element: Atomic # 1 Polarization: -15.56 SS G_CDS: 0.40 Total: -15.15 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 4.53 Total: 7.63 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -2.32 Total: -15.09 kcal Atomic # 14 Polarization: -5.83 SS G_CDS: 2.05 Total: -3.78 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.72 kcal Total: -31.09 3.98 -27.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9706522_484008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.939 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds